BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0010.p (273 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLV3.1 B3KLV3_9BACI Domain of unkown function DUF1901 172 4e-41 B1DDP6.1 B1DDP6_9BACL Domain of unkown function DUF1901 123 2e-26 C0ZAM9.1 C0ZAM9_BREBN Probable BofC protein 84 1e-14 C5D5F0.1 C5D5F0_9BACI Domain of unkown function DUF1901 78 8e-13 Q9KDJ0.1 Q9KDJ0_BACHD Forespore regulator of the sigma-K checkpoint 75 4e-12 >B3KLV3.1 B3KLV3_9BACI Domain of unkown function DUF1901 Length = 237 Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 141/236 (59%), Gaps = 26/236 (11%) Query: 37 APWVGAACIALTLLAWRGMQVPEELSGLLSDTAWNVPDQLSGLQEQASSGDPGRSVPXXX 96 A W + + + ++ W G + +++ LL+ T P + +Q Sbjct: 21 AIWSCSIVVLVGVMVWSGQNITDQMKRLLTATFDETPLAVETMQ---------------- 64 Query: 97 XXYSQAEEEGTEGASALDRKQLLETLSQEPVSRTVHLKTTYISG---EEIVTLPGDKPLV 153 Y Q E++ E D+++ ++ L+ + VH++ TY+ G +++ L D Sbjct: 65 --YLQIEDDKQEERRQ-DQREFMQKLNTSKGKKHVHVRITYVCGIEEQDMGKLTADG--- 118 Query: 154 QLKQVIAAHPGWNGWISADGDLWLERMVNDLSPLIKKDAFFGVDEQGNLTLFKGPPAQEK 213 + +++ +P W G + G++WLE+ V+DLSP K+ A+ +D GNLTLF GPP +EK Sbjct: 119 -IYELMNKNPLWQGRLDNKGNVWLEQTVSDLSPACKRQAYMSIDANGNLTLFDGPPEEEK 177 Query: 214 VLKTFFQMDMGSMKSSLPDEILEQLHEGIRVQDVEEYNSVLSTFSDYARDSSEQVM 269 V++TFFQ+D+GSM+SSLP ++++QL EGIR+QD+EEYNSVLSTFSDYARD +E VM Sbjct: 178 VMRTFFQLDVGSMESSLPKDVIQQLEEGIRIQDMEEYNSVLSTFSDYARDMAENVM 233 >B1DDP6.1 B1DDP6_9BACL Domain of unkown function DUF1901 Length = 196 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 63/148 (42%), Positives = 102/148 (68%), Gaps = 4/148 (2%) Query: 124 QEPVSRTVHLKTTYISGEEIVTLPGDKPLVQLKQVIAAHPGWNGWISADGD-LWLERMVN 182 +EP++ V L YI GEE L G ++ +++ +HP W +S DG + LE+ + Sbjct: 49 EEPLA--VQLHRQYICGEETQPL-GQLTSAEVIRMLVSHPEWTAMLSQDGQTVLLEQEIE 105 Query: 183 DLSPLIKKDAFFGVDEQGNLTLFKGPPAQEKVLKTFFQMDMGSMKSSLPDEILEQLHEGI 242 D S K + + G+D+QG L+LF+G P +EKV+KTFFQ+D+ M+SSLP + +++L EGI Sbjct: 106 DFSQSCKGNIYIGLDKQGYLSLFEGAPKKEKVVKTFFQLDVKYMESSLPQDKVDRLSEGI 165 Query: 243 RVQDVEEYNSVLSTFSDYARDSSEQVMQ 270 ++ D++EYNSVLST+SD+A ++++VM+ Sbjct: 166 KITDMDEYNSVLSTYSDFAMPANQKVMK 193 >C0ZAM9.1 C0ZAM9_BREBN Probable BofC protein Length = 183 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 3/115 (2%) Query: 149 DKPLVQLKQVIAAHPGWNGWISADGD---LWLERMVNDLSPLIKKDAFFGVDEQGNLTLF 205 D V+ Q+ A +NGW + + L + D++P K++ G+ G L LF Sbjct: 64 DHVSVRPNQLADAMGNYNGWEIVQAEPVKMLLMKREQDIAPACKENGHIGIAADGMLALF 123 Query: 206 KGPPAQEKVLKTFFQMDMGSMKSSLPDEILEQLHEGIRVQDVEEYNSVLSTFSDY 260 G PA++ V++TF+++D M++SLP E E L GIR++++ EYNSVLST+ +Y Sbjct: 124 HGLPAEQDVVQTFYRIDTAKMEASLPKEEWENLKRGIRIRNLAEYNSVLSTYGEY 178 >C5D5F0.1 C5D5F0_9BACI Domain of unkown function DUF1901 Length = 161 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 6/136 (4%) Query: 127 VSRTVHLKTTYISGEEIVTLPGDKPLVQLKQVIAAHPGWNGWISADGDLWLERMVNDLSP 186 V T+ L+ Y+ GE + ++ +V +K + + W D + + VND+SP Sbjct: 28 VKMTIILEQQYLDGE-VSQETKEETVVSMKDIWKKYKDWQLVNMDDQTIVFRKTVNDISP 86 Query: 187 LIKKDAFFGVDEQGNLTLFKGPPAQE-KVLKTFFQMDMGSMKSSLPDEILEQLHEGIRVQ 245 L+K + +FG+ E G L++F+G PA +V+++FFQ+D+ ++S EQL +GIRV Sbjct: 87 LLKANGYFGITEDGTLSIFEGSPAHSTRVIQSFFQIDVKKLESRQH----EQLKKGIRVV 142 Query: 246 DVEEYNSVLSTFSDYA 261 +Y ++ T+ +A Sbjct: 143 SKSQYKDIIETYRHFA 158 >Q9KDJ0.1 Q9KDJ0_BACHD Forespore regulator of the sigma-K checkpoint Length = 178 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 81/140 (57%), Gaps = 13/140 (9%) Query: 128 SRTVHLKTTYISGE---EIVTLPGDKPLVQLKQVIAAHPGWNGWISADGD-LWLERMVND 183 S +V L+ Y+ GE E +T +P+ ++Q++ + GW ++S +GD + L++ V D Sbjct: 46 SISVRLERHYVDGEISEEYIT----EPIETIEQLMGQYHGWI-FVSQNGDEMILKKDVPD 100 Query: 184 LSPLIKKDAFFGVDEQGNLTLFKGPPAQEKVLKTFFQMDMGSMKSSLPDEILEQLHEGIR 243 LSPL K + FF + G L L+ G ++ ++++FF++D ++S L D QL GIR Sbjct: 101 LSPLTKANGFFSISNDGQLNLYDGSAEEQPIIQSFFRLDTKKLESGLHD----QLRSGIR 156 Query: 244 VQDVEEYNSVLSTFSDYARD 263 + +++Y VLS Y ++ Sbjct: 157 IGTLDDYREVLSICLPYRQE 176 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.131 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,536,802,834 Number of extensions: 61025322 Number of successful extensions: 114971 Number of sequences better than 1.0e-05: 88 Number of HSP's gapped: 114952 Number of HSP's successfully gapped: 88 Length of query: 273 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 139 Effective length of database: 1,798,280,193 Effective search space: 249960946827 Effective search space used: 249960946827 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)