BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0008.p (169 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLV4.1 B3KLV4_9BACI Crossover junction endodeoxyribonuclease R... 256 4e-67 B1DDP5.1 B1DDP5_9BACL Crossover junction endodeoxyribonuclease R... 227 3e-58 C0ZAN2.1 RUVC_BREBN Crossover junction endodeoxyribonuclease ruv... 170 5e-41 Q24UN5.1 RUVC_DESHY Crossover junction endodeoxyribonuclease ruv... 166 7e-40 B8FQV7.1 RUVC_DESHD Crossover junction endodeoxyribonuclease ruv... 166 7e-40 >B3KLV4.1 B3KLV4_9BACI Crossover junction endodeoxyribonuclease RuvC EC=3.1.22.4 Length = 167 Score = 256 bits (655), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 124/167 (74%), Positives = 138/167 (82%) Query: 3 LRILGIDPGLAIVGFGFVDKVGNKLTPVQYGCIQTEAHTPEEERLLHVYEGMVQLIDKYQ 62 +RILGIDPG+AIVGFGFVDKVG+K+TPVQYGCIQTEAHTP+EERL HVYEGM+QLIDKY+ Sbjct: 1 MRILGIDPGIAIVGFGFVDKVGSKVTPVQYGCIQTEAHTPDEERLHHVYEGMLQLIDKYE 60 Query: 63 PDAVAVEKLFFSRNVTTALPVAQARGVLILAAVQRGLPVAEYTPMMVKQAVVGYGKAEKK 122 P+AVA EKLFF+RNVTTA+ V+QARGVLILAAVQRGLP+AEYTPM VKQA+VGYGKAEKK Sbjct: 61 PEAVAFEKLFFNRNVTTAMSVSQARGVLILAAVQRGLPIAEYTPMQVKQAIVGYGKAEKK 120 Query: 123 QVQEMXXXXXXXXXXXXXXXXXXXXXXXXCHAHSVSLNSKLNEVLRK 169 QVQEM CHAHS +LNSKLNEVLRK Sbjct: 121 QVQEMVRMFLKLQSIPKPDDVADALAVAICHAHSYTLNSKLNEVLRK 167 >B1DDP5.1 B1DDP5_9BACL Crossover junction endodeoxyribonuclease RuvC EC=3.1.22.4 Length = 166 Score = 227 bits (578), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 108/166 (65%), Positives = 125/166 (75%) Query: 3 LRILGIDPGLAIVGFGFVDKVGNKLTPVQYGCIQTEAHTPEEERLLHVYEGMVQLIDKYQ 62 +R+LGIDPG+AI GFGF+DK G+KL PVQYGCIQT AHTP+EERL+ +Y+ V L+DKY+ Sbjct: 1 MRVLGIDPGIAIAGFGFIDKDGHKLKPVQYGCIQTAAHTPQEERLVQIYDSAVALMDKYK 60 Query: 63 PDAVAVEKLFFSRNVTTALPVAQARGVLILAAVQRGLPVAEYTPMMVKQAVVGYGKAEKK 122 PD VAVEKLFF+RNVTTA V QARGV+ILAA QRGLPVAEYTP+ VKQAVVGYGKAEK+ Sbjct: 61 PDTVAVEKLFFNRNVTTAFAVGQARGVIILAAAQRGLPVAEYTPLQVKQAVVGYGKAEKR 120 Query: 123 QVQEMXXXXXXXXXXXXXXXXXXXXXXXXCHAHSVSLNSKLNEVLR 168 QVQEM CHAHS L+ K+NEVLR Sbjct: 121 QVQEMVKMFLKLSAIPKPDDVADALAVAICHAHSSGLSQKINEVLR 166 >C0ZAN2.1 RUVC_BREBN Crossover junction endodeoxyribonuclease ruvC EC=3.1.22.4 Length = 166 Score = 170 bits (430), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 83/125 (66%), Positives = 99/125 (79%) Query: 3 LRILGIDPGLAIVGFGFVDKVGNKLTPVQYGCIQTEAHTPEEERLLHVYEGMVQLIDKYQ 62 +RILGIDPG+AIVGFG VDK G++L PVQYG IQTEA P RL ++E M L++ Y+ Sbjct: 1 MRILGIDPGIAIVGFGVVDKEGSQLRPVQYGSIQTEAGLPVPLRLKQIFEAMQSLLETYR 60 Query: 63 PDAVAVEKLFFSRNVTTALPVAQARGVLILAAVQRGLPVAEYTPMMVKQAVVGYGKAEKK 122 PD ++VEKLFF++NVTTA V QARGV+ILAA G+PV EYTPM VKQAV GYG AEKK Sbjct: 61 PDEMSVEKLFFNKNVTTAFTVGQARGVIILAAELAGVPVYEYTPMQVKQAVTGYGGAEKK 120 Query: 123 QVQEM 127 Q+QEM Sbjct: 121 QIQEM 125 >Q24UN5.1 RUVC_DESHY Crossover junction endodeoxyribonuclease ruvC EC=3.1.22.4 Length = 165 Score = 166 bits (420), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 83/163 (50%), Positives = 107/163 (65%) Query: 5 ILGIDPGLAIVGFGFVDKVGNKLTPVQYGCIQTEAHTPEEERLLHVYEGMVQLIDKYQPD 64 ILGIDPG AI+G+G ++K GN+L PV Y C +T AHTP ERLL +Y + I + QP Sbjct: 3 ILGIDPGTAIMGYGLIEKKGNRLFPVDYACWRTPAHTPMPERLLMLYHEIEAYIKEKQPH 62 Query: 65 AVAVEKLFFSRNVTTALPVAQARGVLILAAVQRGLPVAEYTPMMVKQAVVGYGKAEKKQV 124 VAVE+LFF+RN TTA+ V QARGV++LAA Q GLPV EYTP+ VKQAV GYG+A+K+Q+ Sbjct: 63 HVAVEELFFNRNTTTAISVGQARGVVLLAAAQCGLPVYEYTPLQVKQAVAGYGRADKQQI 122 Query: 125 QEMXXXXXXXXXXXXXXXXXXXXXXXXCHAHSVSLNSKLNEVL 167 Q+M CHAHSV+L +++ L Sbjct: 123 QQMVRALLGLQEIPKPDDTADALAIAICHAHSVNLLNRMGGAL 165 >B8FQV7.1 RUVC_DESHD Crossover junction endodeoxyribonuclease ruvC EC=3.1.22.4 Length = 165 Score = 166 bits (420), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 83/163 (50%), Positives = 107/163 (65%) Query: 5 ILGIDPGLAIVGFGFVDKVGNKLTPVQYGCIQTEAHTPEEERLLHVYEGMVQLIDKYQPD 64 ILGIDPG AI+G+G ++K GN+L PV Y C +T AHTP ERLL +Y + I + QP Sbjct: 3 ILGIDPGTAIMGYGLIEKKGNRLFPVDYACWRTPAHTPMPERLLMLYHEIEAYIKEKQPH 62 Query: 65 AVAVEKLFFSRNVTTALPVAQARGVLILAAVQRGLPVAEYTPMMVKQAVVGYGKAEKKQV 124 VAVE+LFF+RN TTA+ V QARGV++LAA Q GLPV EYTP+ VKQAV GYG+A+K+Q+ Sbjct: 63 HVAVEELFFNRNTTTAISVGQARGVVLLAAAQCGLPVYEYTPLQVKQAVAGYGRADKQQI 122 Query: 125 QEMXXXXXXXXXXXXXXXXXXXXXXXXCHAHSVSLNSKLNEVL 167 Q+M CHAHSV+L +++ L Sbjct: 123 QQMVRALLGLQEIPKPDDTADALAIAICHAHSVNLLNRMGGAL 165 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 814,508,741 Number of extensions: 27975643 Number of successful extensions: 63597 Number of sequences better than 1.0e-05: 1096 Number of HSP's gapped: 62848 Number of HSP's successfully gapped: 1096 Length of query: 169 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 44 Effective length of database: 1,883,069,328 Effective search space: 82855050432 Effective search space used: 82855050432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)