BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0007.p (207 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLV5.1 B3KLV5_9BACI Holliday junction DNA helicase RuvA 288 2e-76 B1DDP4.1 B1DDP4_9BACL Holliday junction DNA helicase RuvA 234 5e-60 C0ZAN3.1 RUVA_BREBN Holliday junction ATP-dependent DNA helicase... 192 2e-47 C5D5E9.1 C5D5E9_9BACI Holliday junction DNA helicase RuvA 162 1e-38 Q9KDI9.1 RUVA_BACHD Holliday junction ATP-dependent DNA helicase... 159 1e-37 >B3KLV5.1 B3KLV5_9BACI Holliday junction DNA helicase RuvA Length = 205 Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 140/206 (67%), Positives = 161/206 (78%), Gaps = 1/206 (0%) Query: 1 MIDYLRGPVVHLEPEYVVVDVQGIGYRVFCPNPYAFAKLEGPVTIYIHYQTREDATLLFG 60 MID+LRG VVHLE EY+V+DVQG+GYRVFCPNPYAFAK EG VT++ H+ REDA LLFG Sbjct: 1 MIDFLRGQVVHLESEYIVLDVQGVGYRVFCPNPYAFAKTEGTVTVFTHHHVREDAILLFG 60 Query: 61 FPTREEQKLFRKLIEVSGIGPRVALGILTGGTPDQLISAIYQENITFLTKLPGIGKKTAQ 120 FPTREEQKLFRKLIEVSGIGPRVALGIL GG+PD ++SAIYQENI+FL KLPGIGKKTAQ Sbjct: 61 FPTREEQKLFRKLIEVSGIGPRVALGILGGGSPDHVVSAIYQENISFLIKLPGIGKKTAQ 120 Query: 121 RMILDLRDKLDGLSAVSMQTGLFXXXXXXXXXXXXXXXXXXRDGLRALGYTEAELDRVWL 180 RMILDL+DKL+G SM TGLF R+GL+ALGYT++ELD+VWL Sbjct: 121 RMILDLKDKLEGFGNASMMTGLF-AIQEPEADDGGSAWSEAREGLKALGYTDSELDKVWL 179 Query: 181 TMKKEGADSGPVDVLMKKALGLLYTA 206 +K GA VDVLMK+AL L+ Sbjct: 180 KIKDSGASGESVDVLMKRALQQLFAG 205 >B1DDP4.1 B1DDP4_9BACL Holliday junction DNA helicase RuvA Length = 212 Score = 234 bits (596), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 125/222 (56%), Positives = 144/222 (64%), Gaps = 30/222 (13%) Query: 1 MIDYLRGPVVHLEPEYVVVDVQGIGYRVFCPNPYAFAKLEGPVTIYIHYQTREDATLLFG 60 MID+LRG + H+E EYVV+DV+ +GY+VF PNPYAFA EG VTIYIH+ REDA LL+G Sbjct: 1 MIDFLRGLISHVESEYVVLDVRDVGYQVFTPNPYAFAGKEGTVTIYIHHHVREDAILLYG 60 Query: 61 FPTREEQKLFRKLIEVSGIGPRVALGILTGGTPDQLISAIYQENITFLTKLPGIGKKTAQ 120 F +REEQ LFRKL+EVSGIGPRVALGIL GG PD +I AI QENI FLT+LPGIGKKTAQ Sbjct: 61 FESREEQTLFRKLLEVSGIGPRVALGILAGGRPDAVIGAIQQENIAFLTRLPGIGKKTAQ 120 Query: 121 RMILDLRDKLDG------------------LSAVSMQTGLFXXXXXXXXXXXXXXXXXXR 162 RMILDL+DKL G +SA S Q G R Sbjct: 121 RMILDLKDKLAGFATDAGLLAAAGLAPHQPVSAASAQQG------------AGTAWEEAR 168 Query: 163 DGLRALGYTEAELDRVWLTMKKEGADSGPVDVLMKKALGLLY 204 DGL ALGYT AELD+ W + VD LMK+AL L+ Sbjct: 169 DGLSALGYTAAELDKAWSALAPSVTADETVDSLMKRALQQLF 210 >C0ZAN3.1 RUVA_BREBN Holliday junction ATP-dependent DNA helicase ruvA EC=3.6.1.- Length = 205 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 95/204 (46%), Positives = 135/204 (66%), Gaps = 3/204 (1%) Query: 1 MIDYLRGPVVHLEPEYVVVDVQGIGYRVFCPNPYAFAKLEGPVT-IYIHYQTREDATLLF 59 MID++ G + +L+ EY+V++ GIGYR+FCPNPY F + EG T ++ H+ REDA LL+ Sbjct: 1 MIDFVEGTLSYLDSEYIVIETGGIGYRLFCPNPYQFVRYEGNKTKLFTHHHVREDAILLY 60 Query: 60 GFPTREEQKLFRKLIEVSGIGPRVALGILTGGTPDQLISAIYQENITFLTKLPGIGKKTA 119 GF TR+E+ LFRKL++VSGIGP+ L IL TP+QL+ A+ QEN+T+LTK PGIGKKTA Sbjct: 61 GFATRDERDLFRKLLDVSGIGPKGGLAILAAATPEQLVMAVQQENVTYLTKFPGIGKKTA 120 Query: 120 QRMILDLRDKLDGLSAVSMQTGLFXXXXXXXXXXXXXXXXXXRDGLRALGYTEAELDRVW 179 QR+ILDL+DKL G + ++ T D L ALGY++ EL ++ Sbjct: 121 QRIILDLKDKLVGYTPSAILT--VAAGDLTAGEQAVSALNEALDALTALGYSDGELQKIR 178 Query: 180 LTMKKEGADSGPVDVLMKKALGLL 203 T+ ++ + V+ L+K+ L LL Sbjct: 179 NTLSEKSKEGDGVEKLIKQGLALL 202 >C5D5E9.1 C5D5E9_9BACI Holliday junction DNA helicase RuvA Length = 201 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/204 (44%), Positives = 127/204 (62%), Gaps = 6/204 (2%) Query: 1 MIDYLRGPVVHLEPEYVVVDVQGIGYRVFCPNPYAFAKLEGP-VTIYIHYQTREDATLLF 59 MI+++RG V ++ PEY+V+D GIGY++F PNP++F + VT+Y + RED L+ Sbjct: 1 MIEFVRGYVDYVCPEYIVIDNNGIGYQIFTPNPFSFQESRDTIVTVYTYQYVREDTLALY 60 Query: 60 GFPTREEQKLFRKLIEVSGIGPRVALGILTGGTPDQLISAIYQENITFLTKLPGIGKKTA 119 GF TREE+ LF KL++VSGIGP+ L IL G P+QL+ AI QEN TFL K PG+GKKTA Sbjct: 61 GFRTREERTLFAKLLQVSGIGPKGGLAILAAGQPEQLVEAIEQENETFLCKFPGVGKKTA 120 Query: 120 QRMILDLRDKLDGLSAVSMQTGLFXXXXXXXXXXXXXXXXXXRDGLRALGYTEAELDRVW 179 ++MILDL+ KL ++A + LF + L+ALGY E E+ +V Sbjct: 121 RQMILDLKGKLTAVTAKTF-PDLFHLQEESARPHLSALEEAI-EALKALGYAEREIQKVV 178 Query: 180 LTMKKEGADSGPVDVLMKKALGLL 203 ++ KE + D +K+AL L Sbjct: 179 PSLMKENLST---DQYVKRALQQL 199 >Q9KDI9.1 RUVA_BACHD Holliday junction ATP-dependent DNA helicase ruvA EC=3.6.1.- Length = 203 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/208 (42%), Positives = 124/208 (59%), Gaps = 13/208 (6%) Query: 1 MIDYLRGPVVHLEPEYVVVDVQGIGYRVFCPNPYAFAK-LEGPVTIYIHYQTREDATLLF 59 MIDYLRG + ++ +Y VV+V G+GY+V+CPNPY F K + +TIY RED L+ Sbjct: 1 MIDYLRGTLTDIDHQYAVVEVHGVGYQVYCPNPYEFEKERDSVITIYTFQYVREDVIRLY 60 Query: 60 GFPTREEQKLFRKLIEVSGIGPRVALGILTGGTPDQLISAIYQENITFLTKLPGIGKKTA 119 GF T+E++ LF KL+ VSGIGP+ AL IL G P+ +I AI +E+ FL K PG+GKKTA Sbjct: 61 GFRTKEKRSLFEKLLNVSGIGPKGALAILATGQPEHVIQAIEEEDEAFLVKFPGVGKKTA 120 Query: 120 QRMILDLRDKLDGLSAVSMQTGLFXXXXXXXXXXXXXXXXXXRD----GLRALGYTEAEL 175 +++ILDL+ K+D + GLF D L+ALGY E EL Sbjct: 121 RQIILDLKGKVD-----ELHPGLFSQKEEQPKPHEKNDGNQALDEAMEALKALGYVEKEL 175 Query: 176 DRVWLTMKKEGADSGPVDVLMKKALGLL 203 +V +++E + D +KKAL L+ Sbjct: 176 KKVKPKLEQETLTT---DAYIKKALQLM 200 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.142 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,123,745,845 Number of extensions: 40974149 Number of successful extensions: 101572 Number of sequences better than 1.0e-05: 1447 Number of HSP's gapped: 100217 Number of HSP's successfully gapped: 1447 Length of query: 207 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 78 Effective length of database: 1,845,385,268 Effective search space: 143940050904 Effective search space used: 143940050904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)