BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0006.p (335 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLV6.1 B3KLV6_9BACI Holliday junction DNA helicase RuvB 619 e-175 B1DDP3.1 B1DDP3_9BACL Holliday junction DNA helicase RuvB 573 e-162 C0ZAN4.1 RUVB_BREBN Holliday junction ATP-dependent DNA helicase... 533 e-149 B7JQ06.1 B7JQ06_BACC0 Holliday junction DNA helicase RuvA 504 e-141 C3F7H0.1 C3F7H0_BACTU Holliday junction ATP-dependent DNA helica... 504 e-141 >B3KLV6.1 B3KLV6_9BACI Holliday junction DNA helicase RuvB Length = 335 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 305/327 (93%), Positives = 320/327 (97%) Query: 1 MDDRIISANLMMDEQAVELSLRPRYLGEYIGQNQVKENLKIYIEAAKMRSEALDHVLLYG 60 MDDRIISANLMMDEQAVELSLRPRYL EYIGQNQVKENLK+YIEAAKMR+EALDHVLLYG Sbjct: 1 MDDRIISANLMMDEQAVELSLRPRYLAEYIGQNQVKENLKVYIEAAKMRNEALDHVLLYG 60 Query: 61 PPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQQGDVLFIDEIHRLHRTV 120 PPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQ+GDVLFIDEIHRLHRTV Sbjct: 61 PPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHRTV 120 Query: 121 EEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRLE 180 EEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRLE Sbjct: 121 EEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRLE 180 Query: 181 YYTIDELSFIVSRNAELLGIEILGDAAEEIALRSRGTPRIANRLLKRVRDFAQVRGDGII 240 +YT+DELS+IVSRNA+LLGIEILG+AAEEIALRSRGTPRIANRLLKRVRD+AQVRGDG+I Sbjct: 181 FYTVDELSYIVSRNADLLGIEILGEAAEEIALRSRGTPRIANRLLKRVRDYAQVRGDGMI 240 Query: 241 TPEIAGESLKMLQVDPRGLDSIDHKMLHSMISSFRGGPVGLDTIAATIGEESQTIEDVYE 300 TP IA E+LKMLQ+DP GLD IDHKML++MI SFRGGPVGLDTIAATIGEESQTIEDVYE Sbjct: 241 TPSIAQEALKMLQIDPMGLDFIDHKMLNAMIKSFRGGPVGLDTIAATIGEESQTIEDVYE 300 Query: 301 PYLLQIGFLQRTPRGRVVTPAAYQHLG 327 PYLLQIG+LQRTPRGRVVTP AYQHLG Sbjct: 301 PYLLQIGYLQRTPRGRVVTPTAYQHLG 327 >B1DDP3.1 B1DDP3_9BACL Holliday junction DNA helicase RuvB Length = 333 Score = 573 bits (1478), Expect = e-162, Method: Compositional matrix adjust. Identities = 279/327 (85%), Positives = 310/327 (94%) Query: 1 MDDRIISANLMMDEQAVELSLRPRYLGEYIGQNQVKENLKIYIEAAKMRSEALDHVLLYG 60 M+DRIISANLMMDEQA+ELSLRPRYL EYIGQ++ KENLKIYI+AAKMR EALDHVLLYG Sbjct: 1 MEDRIISANLMMDEQAMELSLRPRYLAEYIGQSKAKENLKIYIDAAKMRKEALDHVLLYG 60 Query: 61 PPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQQGDVLFIDEIHRLHRTV 120 PPGLGKTTL+NIIANELGVNLRTTSGPAIERPGDLAALLTNLQ+GDVLFIDEIHRLHRTV Sbjct: 61 PPGLGKTTLSNIIANELGVNLRTTSGPAIERPGDLAALLTNLQEGDVLFIDEIHRLHRTV 120 Query: 121 EEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRLE 180 EEV+YPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGV+SRLE Sbjct: 121 EEVLYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVISRLE 180 Query: 181 YYTIDELSFIVSRNAELLGIEILGDAAEEIALRSRGTPRIANRLLKRVRDFAQVRGDGII 240 +YT+DEL++IVSR+AE+ I I+G+A+EEIA+RSRGTPRIANRLLKRVRD+AQVRGDGII Sbjct: 181 FYTMDELAYIVSRSAEIFDIAIIGEASEEIAMRSRGTPRIANRLLKRVRDYAQVRGDGII 240 Query: 241 TPEIAGESLKMLQVDPRGLDSIDHKMLHSMISSFRGGPVGLDTIAATIGEESQTIEDVYE 300 T EIA +L++ QVDP GLDSIDHKML +M+++F G PVGLDTIAA+IGEESQTIEDVYE Sbjct: 241 THEIAKSALELQQVDPVGLDSIDHKMLLAMMTTFAGRPVGLDTIAASIGEESQTIEDVYE 300 Query: 301 PYLLQIGFLQRTPRGRVVTPAAYQHLG 327 PYL+QIGFLQRTPRGR+ T AY+HLG Sbjct: 301 PYLMQIGFLQRTPRGRIATDQAYRHLG 327 >C0ZAN4.1 RUVB_BREBN Holliday junction ATP-dependent DNA helicase ruvB EC=3.6.1.- Length = 332 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 258/327 (78%), Positives = 295/327 (90%) Query: 1 MDDRIISANLMMDEQAVELSLRPRYLGEYIGQNQVKENLKIYIEAAKMRSEALDHVLLYG 60 MD RII+ ++ +E A ELSLRPRYL EYIGQ VKENLKI+IEAAKMR E+LDHVLLYG Sbjct: 1 MDSRIITTHMNWEEDAAELSLRPRYLNEYIGQQHVKENLKIFIEAAKMRKESLDHVLLYG 60 Query: 61 PPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQQGDVLFIDEIHRLHRTV 120 PPGLGKTTL+ IIANELGVN+RTTSGPAIERPGDLAA+LTNLQ+GDVLFIDEIHRL+R+V Sbjct: 61 PPGLGKTTLSQIIANELGVNIRTTSGPAIERPGDLAAILTNLQEGDVLFIDEIHRLNRSV 120 Query: 121 EEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRLE 180 EEV+YPAMEDFALDI+IGKGPSARSVRLDLPPFTL+GATTRAG+LSAPLRDRFGVV+RLE Sbjct: 121 EEVLYPAMEDFALDIIIGKGPSARSVRLDLPPFTLVGATTRAGMLSAPLRDRFGVVNRLE 180 Query: 181 YYTIDELSFIVSRNAELLGIEILGDAAEEIALRSRGTPRIANRLLKRVRDFAQVRGDGII 240 +YT+ EL+FIVSR A++L + I AEEIA RSRGTPR+ANRLLKRVRDFAQV+G+G+I Sbjct: 181 FYTVPELTFIVSRAADILQVVIREGGAEEIARRSRGTPRVANRLLKRVRDFAQVKGEGVI 240 Query: 241 TPEIAGESLKMLQVDPRGLDSIDHKMLHSMISSFRGGPVGLDTIAATIGEESQTIEDVYE 300 T EIA E+L+ LQVD GLD IDHK+L ++I F GGPVGLDTIAATIGEESQT+EDV E Sbjct: 241 TTEIAKEALERLQVDACGLDHIDHKLLLAIIDRFDGGPVGLDTIAATIGEESQTVEDVCE 300 Query: 301 PYLLQIGFLQRTPRGRVVTPAAYQHLG 327 PYL+QIGF+QRTPRGRV+TP+AYQH G Sbjct: 301 PYLMQIGFMQRTPRGRVLTPSAYQHFG 327 >B7JQ06.1 B7JQ06_BACC0 Holliday junction DNA helicase RuvA Length = 541 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 244/327 (74%), Positives = 285/327 (87%) Query: 1 MDDRIISANLMMDEQAVELSLRPRYLGEYIGQNQVKENLKIYIEAAKMRSEALDHVLLYG 60 MD+R++S ++ +E SLRP+ L +YIGQ++ K NL+++IEAAKMR E LDHVLLYG Sbjct: 209 MDERLLSGESAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYG 268 Query: 61 PPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQQGDVLFIDEIHRLHRTV 120 PPGLGKTTLANIIANE+GVN+RTTSGPAIERPGDLAA+LT+LQ GDVLFIDEIHRLHR++ Sbjct: 269 PPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSI 328 Query: 121 EEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRLE 180 EEV+YPAMEDF LDI+IGKGPSARSVRLDLPPFTL+GATTRAG LSAPLRDRFGV+SRLE Sbjct: 329 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLE 388 Query: 181 YYTIDELSFIVSRNAELLGIEILGDAAEEIALRSRGTPRIANRLLKRVRDFAQVRGDGII 240 YYT+D+LS IV R AE+ +EI AA EIA R+RGTPRIANRLL+RVRDFAQVRG+G + Sbjct: 389 YYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTV 448 Query: 241 TPEIAGESLKMLQVDPRGLDSIDHKMLHSMISSFRGGPVGLDTIAATIGEESQTIEDVYE 300 T EI +L++LQVD GLD IDHK+L +I FRGGPVGL+T++ATIGEES TIEDVYE Sbjct: 449 TMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYE 508 Query: 301 PYLLQIGFLQRTPRGRVVTPAAYQHLG 327 PYLLQIGFLQRTPRGR+VTP AY+H G Sbjct: 509 PYLLQIGFLQRTPRGRIVTPLAYEHFG 535 >C3F7H0.1 C3F7H0_BACTU Holliday junction ATP-dependent DNA helicase ruvB Length = 333 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 244/327 (74%), Positives = 285/327 (87%) Query: 1 MDDRIISANLMMDEQAVELSLRPRYLGEYIGQNQVKENLKIYIEAAKMRSEALDHVLLYG 60 MD+R++S ++ +E SLRP+ L +YIGQ++ K NL+++IEAAKMR E LDHVLLYG Sbjct: 1 MDERLLSGEFAYEDADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYG 60 Query: 61 PPGLGKTTLANIIANELGVNLRTTSGPAIERPGDLAALLTNLQQGDVLFIDEIHRLHRTV 120 PPGLGKTTLANIIANE+GVN+RTTSGPAIERPGDLAA+LT+LQ GDVLFIDEIHRLHR++ Sbjct: 61 PPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEIHRLHRSI 120 Query: 121 EEVMYPAMEDFALDIMIGKGPSARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVVSRLE 180 EEV+YPAMEDF LDI+IGKGPSARSVRLDLPPFTL+GATTRAG LSAPLRDRFGV+SRLE Sbjct: 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLSRLE 180 Query: 181 YYTIDELSFIVSRNAELLGIEILGDAAEEIALRSRGTPRIANRLLKRVRDFAQVRGDGII 240 YYT+D+LS IV R AE+ +EI AA EIA R+RGTPRIANRLL+RVRDFAQVRG+G + Sbjct: 181 YYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIANRLLRRVRDFAQVRGNGTV 240 Query: 241 TPEIAGESLKMLQVDPRGLDSIDHKMLHSMISSFRGGPVGLDTIAATIGEESQTIEDVYE 300 T EI +L++LQVD GLD IDHK+L +I FRGGPVGL+T++ATIGEES TIEDVYE Sbjct: 241 TMEITQMALELLQVDKLGLDHIDHKLLLGIIEKFRGGPVGLETVSATIGEESHTIEDVYE 300 Query: 301 PYLLQIGFLQRTPRGRVVTPAAYQHLG 327 PYLLQIGFLQRTPRGR+VTP AY+H G Sbjct: 301 PYLLQIGFLQRTPRGRIVTPLAYEHFG 327 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,854,608,003 Number of extensions: 76001075 Number of successful extensions: 364039 Number of sequences better than 1.0e-05: 2638 Number of HSP's gapped: 363559 Number of HSP's successfully gapped: 2638 Length of query: 335 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 199 Effective length of database: 1,779,438,163 Effective search space: 354108194437 Effective search space used: 354108194437 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)