BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0149.0002.p
         (60 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DDN9.1 B1DDN9_9BACL Queuine tRNA-ribosyltransferase EC=2.4.2.29     101   2e-20
B3KFH8.1 B3KFH8_9BACI Queuine tRNA-ribosyltransferase EC=2.4.2.29     100   3e-20
Q49Y77.1 Q49Y77_STAS1 Queuine tRNA-ribosyltransferase EC=2.4.2.29      96   1e-18
B9DNG7.1 TGT_STACT Queuine tRNA-ribosyltransferase EC=2.4.2.29         95   3e-18
Q4L6Y4.1 TGT_STAHJ Queuine tRNA-ribosyltransferase EC=2.4.2.29         94   4e-18

>B1DDN9.1 B1DDN9_9BACL Queuine tRNA-ribosyltransferase EC=2.4.2.29
          Length = 377

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 56/60 (93%)

Query: 1   LRHLIKADETFGLRLTTYHNLYFLLELMRKMREAIREDRLLDFRDEFFAQYGLYDNLKGF 60
           +RHL+KADETFG+RLTTYHNL+FLL+LMR +R+AI EDRLLDFRD+FF +YGL+DN KGF
Sbjct: 318 IRHLLKADETFGIRLTTYHNLHFLLQLMRDVRQAIMEDRLLDFRDDFFTKYGLFDNDKGF 377


>B3KFH8.1 B3KFH8_9BACI Queuine tRNA-ribosyltransferase EC=2.4.2.29
          Length = 379

 Score =  100 bits (250), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/60 (78%), Positives = 55/60 (91%)

Query: 1   LRHLIKADETFGLRLTTYHNLYFLLELMRKMREAIREDRLLDFRDEFFAQYGLYDNLKGF 60
           LRHLIK+DETFGLRLTTYHNL+FL+ LMR +R++I EDRLLDFRDEFF +YGL+DN KGF
Sbjct: 320 LRHLIKSDETFGLRLTTYHNLHFLINLMRGVRQSIMEDRLLDFRDEFFDKYGLHDNEKGF 379


>Q49Y77.1 Q49Y77_STAS1 Queuine tRNA-ribosyltransferase EC=2.4.2.29
          Length = 381

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/61 (72%), Positives = 54/61 (88%), Gaps = 1/61 (1%)

Query: 1   LRHLIKADETFGLRLTTYHNLYFLLELMRKMREAIREDRLLDFRDEFFAQYGL-YDNLKG 59
           +RHLIKA+ETFG+RLTTYHNL+FLL+LM  +R+AIREDRLLDF++EFF QYGL  +N K 
Sbjct: 321 IRHLIKAEETFGIRLTTYHNLHFLLKLMENIRQAIREDRLLDFKEEFFEQYGLNVENPKN 380

Query: 60  F 60
           F
Sbjct: 381 F 381


>B9DNG7.1 TGT_STACT Queuine tRNA-ribosyltransferase EC=2.4.2.29
          Length = 380

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 54/61 (88%), Gaps = 1/61 (1%)

Query: 1   LRHLIKADETFGLRLTTYHNLYFLLELMRKMREAIREDRLLDFRDEFFAQYGL-YDNLKG 59
           LRHLIKA+ETFG+RLTTYHNLYFLL+LM  +R+AIREDRLLDF++EFF QYGL  +N K 
Sbjct: 320 LRHLIKAEETFGIRLTTYHNLYFLLKLMEDIRQAIREDRLLDFKEEFFEQYGLNVENPKN 379

Query: 60  F 60
           F
Sbjct: 380 F 380


>Q4L6Y4.1 TGT_STAHJ Queuine tRNA-ribosyltransferase EC=2.4.2.29
          Length = 379

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/61 (72%), Positives = 53/61 (86%), Gaps = 1/61 (1%)

Query: 1   LRHLIKADETFGLRLTTYHNLYFLLELMRKMREAIREDRLLDFRDEFFAQYGL-YDNLKG 59
           +RHLIKA+ETFG+RLTT HNL+FLL+LM  +R+AIREDRLLDF+DEFF QYGL  +N K 
Sbjct: 319 IRHLIKAEETFGIRLTTIHNLHFLLKLMEDIRQAIREDRLLDFKDEFFEQYGLNVENPKN 378

Query: 60  F 60
           F
Sbjct: 379 F 379


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.333    0.150    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 345,129,352
Number of extensions: 10211173
Number of successful extensions: 33130
Number of sequences better than 1.0e-05: 300
Number of HSP's gapped: 33131
Number of HSP's successfully gapped: 300
Length of query: 60
Length of database: 3,060,696,203
Length adjustment: 32
Effective length of query: 28
Effective length of database: 2,759,223,723
Effective search space: 77258264244
Effective search space used: 77258264244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 126 (53.1 bits)