BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0149.0001.p
         (104 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFH9.1 B3KFH9_9BACI Preprotein translocase, YajC subunit            115   1e-24
B1DDN8.1 B1DDN8_9BACL Preprotein translocase, YajC subunit            103   5e-21
C0ZAP0.1 C0ZAP0_BREBN Putative uncharacterized protein yrbF            90   7e-17
A7Z765.1 A7Z765_BACA2 YrbF                                             70   5e-11
B3QYH9.1 B3QYH9_CHLT3 Preprotein translocase, YajC subunit             70   6e-11

>B3KFH9.1 B3KFH9_9BACI Preprotein translocase, YajC subunit
          Length = 102

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 72/94 (76%)

Query: 4  FQYAATAGSGGSILGLVGPXXXXXXXXXXXXIRPQQKKTKTRNAMLKALKKGDKVVTIGG 63
          F+ AA  G GG ILGL+ P            IRPQQKK KTRNAML AL KGDKVVTIGG
Sbjct: 5  FELAAAQGQGGGILGLILPFVLMFVIFYFLLIRPQQKKQKTRNAMLSALSKGDKVVTIGG 64

Query: 64 LHGTIMEISDDIVVLRVNDVTKLTFDRGSISHSV 97
          LHGTI+EI+DDIVVL+VNDVTKLTFDR S+SHSV
Sbjct: 65 LHGTIVEITDDIVVLKVNDVTKLTFDRNSVSHSV 98


>B1DDN8.1 B1DDN8_9BACL Preprotein translocase, YajC subunit
          Length = 104

 Score =  103 bits (257), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 63/90 (70%), Gaps = 1/90 (1%)

Query: 6  YAATAGSGGS-ILGLVGPXXXXXXXXXXXXIRPQQKKTKTRNAMLKALKKGDKVVTIGGL 64
          Y A   +GG+ I  ++ P            IRPQQKKTK RN++L  LKKGDK+ TIGGL
Sbjct: 4  YLAAGEAGGTNIFQMIWPFILMFAVFYFLLIRPQQKKTKQRNSLLSQLKKGDKIQTIGGL 63

Query: 65 HGTIMEISDDIVVLRVNDVTKLTFDRGSIS 94
           GTI+E++DDIVVLRVND TK+TFDR +IS
Sbjct: 64 QGTIVELTDDIVVLRVNDTTKMTFDRSAIS 93


>C0ZAP0.1 C0ZAP0_BREBN Putative uncharacterized protein yrbF
          Length = 106

 Score = 89.7 bits (221), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 50/61 (81%)

Query: 35 IRPQQKKTKTRNAMLKALKKGDKVVTIGGLHGTIMEISDDIVVLRVNDVTKLTFDRGSIS 94
          IRPQQKK K RNAML ALKKGDK+VTIGG+HGTI E+SDD V LR+     +TFDRG+I+
Sbjct: 22 IRPQQKKAKQRNAMLGALKKGDKIVTIGGVHGTIQELSDDTVTLRIAHNVNVTFDRGAIN 81

Query: 95 H 95
          +
Sbjct: 82 N 82


>A7Z765.1 A7Z765_BACA2 YrbF
          Length = 86

 Score = 70.5 bits (171), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 47/80 (58%)

Query: 17 LGLVGPXXXXXXXXXXXXIRPQQKKTKTRNAMLKALKKGDKVVTIGGLHGTIMEISDDIV 76
          LG + P            IRPQQK+ K    M + LKKGD VVTIGGLHGT+  I +  V
Sbjct: 4  LGTIVPIILMFAVLYFLLIRPQQKQQKAVRQMQEELKKGDSVVTIGGLHGTVESIDESKV 63

Query: 77 VLRVNDVTKLTFDRGSISHS 96
          V++  D T+LTFDR +I  +
Sbjct: 64 VIKTGDNTRLTFDRRAIREA 83


>B3QYH9.1 B3QYH9_CHLT3 Preprotein translocase, YajC subunit
          Length = 119

 Score = 70.1 bits (170), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 47/62 (75%), Gaps = 2/62 (3%)

Query: 35  IRPQQKKTKTRNAMLKALKKGDKVVTIGGLHGTIMEISDD--IVVLRVNDVTKLTFDRGS 92
           IRPQQKK K R ++L+ +KKGD+VVTIGG+HGT+  I  D   V+++V+D  KL FD+ +
Sbjct: 43  IRPQQKKQKERESLLETIKKGDRVVTIGGIHGTVAGIDSDKKTVLVQVSDTVKLKFDKSA 102

Query: 93  IS 94
           IS
Sbjct: 103 IS 104


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.135    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 483,482,070
Number of extensions: 13508114
Number of successful extensions: 38646
Number of sequences better than 1.0e-05: 342
Number of HSP's gapped: 38649
Number of HSP's successfully gapped: 342
Length of query: 104
Length of database: 3,060,696,203
Length adjustment: 72
Effective length of query: 32
Effective length of database: 2,382,383,123
Effective search space: 76236259936
Effective search space used: 76236259936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)