BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0147.0028.p
         (146 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2B493.1 Q2B493_9BACI Putative uncharacterized protein                127   2e-28
A7Z1G7.1 A7Z1G7_BACA2 YdaG                                            125   1e-27
Q65N96.1 Q65N96_BACLD YdaG                                            124   3e-27
P80238.2 GS26_BACSU General stress protein 26                         123   4e-27
A8FA19.1 A8FA19_BACP2 General stress protein                          123   5e-27

>Q2B493.1 Q2B493_9BACI Putative uncharacterized protein
          Length = 140

 Score =  127 bits (320), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 90/130 (69%), Gaps = 2/130 (1%)

Query: 1   MDNRELEQTIIKTLDDNKFGSFGTIEAGNKPKVRYMAVFHDGLQIYLATNRKTHKVEELR 60
           M N ++++ ++K L+DNK G+  T+++ NKP  RYM  F+D L++Y AT+++T K EE+ 
Sbjct: 1   MTNNDVKEKVLKILEDNKIGTLATVKS-NKPHTRYMTFFNDELKLYTATSKETDKTEEIE 59

Query: 61  NNPNAFLLLGYE-QGGGKDVLEIEATVAVTKNEGLRSQVWNTELEKWFKGPDDPDYVILE 119
            NPN  +L+GY+ +G G   LEIE   +V  +E L+ +VWN  L+ WF GP+DP+Y++LE
Sbjct: 60  ENPNVHILIGYDGEGLGDAYLEIEGRASVNASEELKEKVWNDHLKPWFDGPNDPNYIVLE 119

Query: 120 LQPTRIEYMG 129
           +QPT +  M 
Sbjct: 120 IQPTDVRVMN 129


>A7Z1G7.1 A7Z1G7_BACA2 YdaG
          Length = 140

 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 87/129 (67%), Gaps = 2/129 (1%)

Query: 1   MDNRELEQTIIKTLDDNKFGSFGTIEAGNKPKVRYMAVFHDGLQIYLATNRKTHKVEELR 60
           M+  E+++ +++ LD +K GS  T+E G KP  RYM  FHDGL IY  T++ THK EE+ 
Sbjct: 1   MNQNEIKEKVLEVLDHHKVGSLATVEQG-KPHSRYMTFFHDGLTIYTPTSKDTHKAEEIE 59

Query: 61  NNPNAFLLLGYE-QGGGKDVLEIEATVAVTKNEGLRSQVWNTELEKWFKGPDDPDYVILE 119
           NNPN  +LLGY+ +G G   +E+  T  +  +  L+ ++W+ +LE+WF G DDP+ VILE
Sbjct: 60  NNPNVHILLGYDCEGFGDAYVEVAGTAKLNNSADLKEKLWDPKLERWFDGKDDPNLVILE 119

Query: 120 LQPTRIEYM 128
           ++P +I+ M
Sbjct: 120 IEPKQIKLM 128


>Q65N96.1 Q65N96_BACLD YdaG
          Length = 140

 Score =  124 bits (311), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 85/131 (64%), Gaps = 2/131 (1%)

Query: 1   MDNRELEQTIIKTLDDNKFGSFGTIEAGNKPKVRYMAVFHDGLQIYLATNRKTHKVEELR 60
           MD ++L+  ++  LD +K GS  T+E+G KP  RYM  FHDGL +Y  T+ +THK EE+ 
Sbjct: 1   MDQQQLKNKVLDILDHHKIGSLATVESG-KPHSRYMTFFHDGLTLYTPTSDETHKAEEID 59

Query: 61  NNPNAFLLLGYE-QGGGKDVLEIEATVAVTKNEGLRSQVWNTELEKWFKGPDDPDYVILE 119
           NNPN  +LLGY  +G G   LEI  T  +  ++ L+ ++W+  LE+WF G DDP+  +LE
Sbjct: 60  NNPNVHVLLGYNGEGLGDAYLEITGTAKLNHSKDLKDKIWDERLEQWFDGKDDPNLTVLE 119

Query: 120 LQPTRIEYMGK 130
           ++P+ I  M +
Sbjct: 120 IEPSEIRLMNE 130


>P80238.2 GS26_BACSU General stress protein 26
          Length = 140

 Score =  123 bits (309), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 86/129 (66%), Gaps = 2/129 (1%)

Query: 1   MDNRELEQTIIKTLDDNKFGSFGTIEAGNKPKVRYMAVFHDGLQIYLATNRKTHKVEELR 60
           M+ ++++Q ++  LD +K GS  T++ G KP  RYM  FHDGL IY  T+++THK EE+ 
Sbjct: 1   MNQQDIKQKVLDVLDHHKVGSLATVQKG-KPHSRYMTFFHDGLTIYTPTSKETHKAEEIE 59

Query: 61  NNPNAFLLLGYE-QGGGKDVLEIEATVAVTKNEGLRSQVWNTELEKWFKGPDDPDYVILE 119
           NNPN  +LLGY+ +G G   +E+     +  +  L+ ++W+++LE+WF G DDP+ VILE
Sbjct: 60  NNPNVHILLGYDCEGFGDAYVEVAGKAKINNSAELKDKIWSSKLERWFDGKDDPNLVILE 119

Query: 120 LQPTRIEYM 128
           ++P  I  M
Sbjct: 120 IEPEDIRLM 128


>A8FA19.1 A8FA19_BACP2 General stress protein
          Length = 140

 Score =  123 bits (308), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 83/129 (64%), Gaps = 2/129 (1%)

Query: 1   MDNRELEQTIIKTLDDNKFGSFGTIEAGNKPKVRYMAVFHDGLQIYLATNRKTHKVEELR 60
           M   EL+Q ++  LD+ K G+  T+E  +KP  RYM  FH+GL +Y  T+++THK +E+ 
Sbjct: 1   MSQEELKQKVLSLLDEQKVGTLATVEQ-DKPHTRYMTFFHEGLTLYTPTSKETHKADEIE 59

Query: 61  NNPNAFLLLGYE-QGGGKDVLEIEATVAVTKNEGLRSQVWNTELEKWFKGPDDPDYVILE 119
            NPN  +L+GY  +G G    EI  T  +T +  L  ++W+ E+EKWFKG DDP+ VIL+
Sbjct: 60  KNPNVHILIGYSGEGFGDTYAEIAGTATLTDDPELIDRLWSEEMEKWFKGKDDPNLVILK 119

Query: 120 LQPTRIEYM 128
           + PT I YM
Sbjct: 120 IDPTSIRYM 128


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 977,060,678
Number of extensions: 40339659
Number of successful extensions: 60246
Number of sequences better than 1.0e-05: 123
Number of HSP's gapped: 60164
Number of HSP's successfully gapped: 123
Length of query: 146
Length of database: 3,060,696,203
Length adjustment: 109
Effective length of query: 37
Effective length of database: 2,033,805,568
Effective search space: 75250806016
Effective search space used: 75250806016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)