BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0147.0026.p (224 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4G8.1 B3K4G8_9BACI Transcriptional regulator domain protein 335 2e-90 A4IPQ9.1 A4IPQ9_GEOTN DNA-binding response regulator 303 8e-81 B4BNU2.1 B4BNU2_9BACI Two component transcriptional regulator, w... 303 8e-81 Q2B1F9.1 Q2B1F9_9BACI DNA-binding response regulator 290 6e-77 A3I6V7.1 A3I6V7_9BACI Response regulator 282 2e-74 >B3K4G8.1 B3K4G8_9BACI Transcriptional regulator domain protein Length = 224 Score = 335 bits (859), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 163/224 (72%), Positives = 186/224 (83%) Query: 1 MSVTLLYVEDDREIGSAVSADLREREYAVRWLXXXXXXXXXXXXCQLVILDVMLPGLDGF 60 MS +LY+EDDREIG VS LR++ Y VRWL C +V+LDVMLPGLDGF Sbjct: 1 MSACILYIEDDREIGGWVSEFLRDKGYEVRWLLSGEQAVQEAAPCAVVVLDVMLPGLDGF 60 Query: 61 TVGQRLKRAYPNLPILMLSARTSIDDKLQGLEFADDYLTKPFHPDELAARIEVLLRRTGA 120 TVGQRLK+AYP LPILMLSARTSIDDKLQGLEFADDYLTKPFHPDELAAR+EVLLRR+ Sbjct: 61 TVGQRLKKAYPGLPILMLSARTSIDDKLQGLEFADDYLTKPFHPDELAARLEVLLRRSVV 120 Query: 121 VLSIPLKLKHLMVYEGDNRIIEAASGKEILLTGKQFQIFSYLLRHLGQILTKEQIYEAVW 180 + P+++KHL VYE +NRI+ +G+E LLTGKQ QIF YLL+H G+++TKEQIYE+VW Sbjct: 121 KSAEPIRVKHLSVYEDENRIVNEDTGEETLLTGKQHQIFMYLLQHQGRVMTKEQIYESVW 180 Query: 181 GESYIEGDKTLMVHIRYLREKLELDPAAPEIIETVRGIGYRVRA 224 GESYIEGDKTLMVHIRYLREKLE DPA PEIIETVRG+GYRVRA Sbjct: 181 GESYIEGDKTLMVHIRYLREKLERDPANPEIIETVRGLGYRVRA 224 >A4IPQ9.1 A4IPQ9_GEOTN DNA-binding response regulator Length = 222 Score = 303 bits (776), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 148/219 (67%), Positives = 174/219 (79%), Gaps = 1/219 (0%) Query: 5 LLYVEDDREIGSAVSADLREREYAVRWLXXXXXXXXXXXXCQLVILDVMLPGLDGFTVGQ 64 +LY+ED++EIG V+ +L ER + V WL C LVILDVMLPGLDGF++G+ Sbjct: 4 VLYIEDEQEIGRWVTMNLTERGHHVTWLQSGEEIEEHLAHCDLVILDVMLPGLDGFSIGK 63 Query: 65 RLKRAYPNLPILMLSARTSIDDKLQGLEFADDYLTKPFHPDELAARIEVLLRRTGAVLSI 124 R+K+ P+LPILMLSART+I+DK++GL FADDYLTKPFHPDELAAR+EVLLRR I Sbjct: 64 RIKKEQPDLPILMLSARTAIEDKVEGLSFADDYLTKPFHPDELAARVEVLLRRFNKNDEI 123 Query: 125 PLKLKHLMVYEGDNRIIEAASGKEILLTGKQFQIFSYLLRHLGQILTKEQIYEAVWGESY 184 LKLKHL ++ D RI+ +G+EILLTGKQ+QIF Y LRHL QILTKEQ+YE VWGE Y Sbjct: 124 -LKLKHLTIHTKDMRIVNHETGEEILLTGKQYQIFQYFLRHLNQILTKEQLYEGVWGEPY 182 Query: 185 IEGDKTLMVHIRYLREKLELDPAAPEIIETVRGIGYRVR 223 IEGDKTLMVHIRYLREKLE DP PEIIET+RGIGYRVR Sbjct: 183 IEGDKTLMVHIRYLREKLEKDPKNPEIIETIRGIGYRVR 221 >B4BNU2.1 B4BNU2_9BACI Two component transcriptional regulator, winged helix family Length = 222 Score = 303 bits (776), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 148/219 (67%), Positives = 174/219 (79%), Gaps = 1/219 (0%) Query: 5 LLYVEDDREIGSAVSADLREREYAVRWLXXXXXXXXXXXXCQLVILDVMLPGLDGFTVGQ 64 +LY+ED++EIG V+ +L ER + V WL C LVILDVMLPGLDGF++G+ Sbjct: 4 VLYIEDEQEIGRWVTMNLTERGHHVTWLQSGEEIEEHLAHCDLVILDVMLPGLDGFSIGK 63 Query: 65 RLKRAYPNLPILMLSARTSIDDKLQGLEFADDYLTKPFHPDELAARIEVLLRRTGAVLSI 124 R+K+ P+LPILMLSART+I+DK++GL FADDYLTKPFHPDELAAR+EVLLRR I Sbjct: 64 RIKKEQPDLPILMLSARTAIEDKVEGLSFADDYLTKPFHPDELAARVEVLLRRFNKNDEI 123 Query: 125 PLKLKHLMVYEGDNRIIEAASGKEILLTGKQFQIFSYLLRHLGQILTKEQIYEAVWGESY 184 LKLKHL ++ D RI+ +G+EILLTGKQ+QIF Y LRHL QILTKEQ+YE VWGE Y Sbjct: 124 -LKLKHLTIHTKDMRIVNHETGEEILLTGKQYQIFQYFLRHLNQILTKEQLYEGVWGEPY 182 Query: 185 IEGDKTLMVHIRYLREKLELDPAAPEIIETVRGIGYRVR 223 IEGDKTLMVHIRYLREKLE DP PEIIET+RGIGYRVR Sbjct: 183 IEGDKTLMVHIRYLREKLEKDPKNPEIIETIRGIGYRVR 221 >Q2B1F9.1 Q2B1F9_9BACI DNA-binding response regulator Length = 225 Score = 290 bits (742), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 143/220 (65%), Positives = 171/220 (77%) Query: 4 TLLYVEDDREIGSAVSADLREREYAVRWLXXXXXXXXXXXXCQLVILDVMLPGLDGFTVG 63 +LY+EDD+EIG L E+ Y+V WL LVILDVMLPGLDGFTVG Sbjct: 5 NILYIEDDKEIGKWTKDYLLEKGYSVDWLQSGEGAAQAAARADLVILDVMLPGLDGFTVG 64 Query: 64 QRLKRAYPNLPILMLSARTSIDDKLQGLEFADDYLTKPFHPDELAARIEVLLRRTGAVLS 123 QRLK+ P +PILMLSART++DDKLQGL+FADDYLTKPFHP+ELAAR++VLLRR G Sbjct: 65 QRLKKDAPGIPILMLSARTAVDDKLQGLQFADDYLTKPFHPEELAARVDVLLRRYGKPEQ 124 Query: 124 IPLKLKHLMVYEGDNRIIEAASGKEILLTGKQFQIFSYLLRHLGQILTKEQIYEAVWGES 183 L L+HL V G+NRI + SG+EI+LTGKQ QIF Y+LRH QILTKEQI+EAVWGE Sbjct: 125 SRLLLRHLEVSLGENRITDTRSGEEIILTGKQHQIFMYMLRHPNQILTKEQIFEAVWGEP 184 Query: 184 YIEGDKTLMVHIRYLREKLELDPAAPEIIETVRGIGYRVR 223 Y++GDKTLMVHIRYLREK+E +P +P I+ET+RGIGYRV+ Sbjct: 185 YMDGDKTLMVHIRYLREKIEENPGSPAILETIRGIGYRVK 224 >A3I6V7.1 A3I6V7_9BACI Response regulator Length = 222 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 138/221 (62%), Positives = 169/221 (76%), Gaps = 1/221 (0%) Query: 3 VTLLYVEDDREIGSAVSADLREREYAVRWLXXXXXXXXXXXXCQLVILDVMLPGLDGFTV 62 + +LY+ED++EIG VS +L ER Y V WL + ILDVMLPGLDGF++ Sbjct: 2 IRILYIEDEKEIGHWVSKELTERGYEVTWLESGDGIEQHIALNDIAILDVMLPGLDGFSI 61 Query: 63 GQRLKRAYPNLPILMLSARTSIDDKLQGLEFADDYLTKPFHPDELAARIEVLLRRTGAVL 122 G+R+KR LPILMLSART+++DK++GL FADDYLTKPFHPDEL AR+EVLLRR Sbjct: 62 GKRIKRENKELPILMLSARTAVEDKIEGLNFADDYLTKPFHPDELGARLEVLLRRYQKND 121 Query: 123 SIPLKLKHLMVYEGDNRIIEAASGKEILLTGKQFQIFSYLLRHLGQILTKEQIYEAVWGE 182 + L+L+HL +Y D RII + +EILLTGKQF + Y +RHL QILTKEQ+YE VWGE Sbjct: 122 DV-LELQHLKMYTKDMRIINTLTEEEILLTGKQFYLLQYFIRHLNQILTKEQLYEGVWGE 180 Query: 183 SYIEGDKTLMVHIRYLREKLELDPAAPEIIETVRGIGYRVR 223 SYIEGDKTLMVHIRYLREK+E++PA P IIET+RGIGYRV+ Sbjct: 181 SYIEGDKTLMVHIRYLREKIEINPAKPMIIETIRGIGYRVK 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.141 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,223,750,761 Number of extensions: 46674232 Number of successful extensions: 231512 Number of sequences better than 1.0e-05: 18212 Number of HSP's gapped: 191529 Number of HSP's successfully gapped: 18228 Length of query: 224 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 93 Effective length of database: 1,826,543,238 Effective search space: 169868521134 Effective search space used: 169868521134 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)