BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0147.0025.p (476 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4G9.1 B3K4G9_9BACI Sensor protein EC=2.7.13.3 350 2e-94 Q2B1G0.1 Q2B1G0_9BACI Sensor protein EC=2.7.13.3 313 3e-83 A4IPR0.1 A4IPR0_GEOTN Sensor protein EC=2.7.13.3 295 6e-78 B4BNU1.1 B4BNU1_9BACI Sensor protein EC=2.7.13.3 295 6e-78 A3I6V6.1 A3I6V6_9BACI Sensor protein EC=2.7.13.3 293 2e-77 >B3K4G9.1 B3K4G9_9BACI Sensor protein EC=2.7.13.3 Length = 462 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 214/479 (44%), Positives = 289/479 (60%), Gaps = 39/479 (8%) Query: 2 RQPGSLRKLHASLLSRYLLIIITALLFIPAVLVIIPLTL-------NTVQEGVPKEYEKY 54 R+ G R SL +RYLL+I+ A++F+P ++ PL +T + P KY Sbjct: 5 RKKGRFRN---SLTNRYLLLILMAMIFMP---IMFPLASIFYWFVNDTFSDRPPAPAGKY 58 Query: 55 QDISELEKIWHKEAEGLLGSSPERINNXXXXXXXXXXXXXMFWVDGEGRTRLSLESADPQ 114 + LE++WH+EA GL G+SPE I MFWVDG +TRL L P Sbjct: 59 TSGTALERMWHEEAAGLSGASPEAIEQKLNSIRQEYPEISMFWVDGGNKTRLQL-PVQPN 117 Query: 115 LWQQNERRPIPPVWTAAQAISFMKKSMAYNPKPMNIVAFVGDRAEAGEGFMVMQIPDALI 174 L P VW+A + FMK S+ + P VAF+G +GEGFMVMQ+P Sbjct: 118 L---------PEVWSAPYTVQFMKNSL--DSDPFTSVAFIGGEG-SGEGFMVMQLP---- 161 Query: 175 ERHYFD-GMSLRFTLVMFVLFTG-----FMVVSLLFFIQIRKRLLRLETAMAFT-GKDGV 227 R Y + + ++ LFT F++VS LFF++IRKRLLRL +AM + G+ Sbjct: 162 -RKYLNVQQPIASETALYGLFTASMSGLFILVSWLFFVRIRKRLLRLRSAMTSSHASTGI 220 Query: 228 PQLIDPGKPDEIGRLETAFNTMVTXXXXXXXXXXXXXXXXXXXVSDLSHDLRTPLTVIRS 287 PQ + K DEIG+LE +N MV +++LSHDLRTPLTVIRS Sbjct: 221 PQPVTLTKYDEIGQLEEGYNDMVIQLEEGQRRQREEEELRKSLIANLSHDLRTPLTVIRS 280 Query: 288 HLHILGKEQLSGRGQESLKLMDERIENLGVLIENLLSYNLLSSGRMTLKPERKDILRLLR 347 H+ + +E LS +G+ESL L++ +I +LG LI+NLLSYNLL+SGR+ L E D+LR+++ Sbjct: 281 HIFSMEREPLSPKGKESLSLIESKIADLGGLIDNLLSYNLLTSGRVQLNMESADVLRIVK 340 Query: 348 ESAAAWYPLWEKEGFRIEIDLEGEPLYWNVDESWFRRILDNLFQNIVRHARSGLYVGVAV 407 ESAAAWYP+WEK G +I + EPL+WNVD WFRR+LDNLFQN+ RHARSG Y+G+ Sbjct: 341 ESAAAWYPVWEKAGIEPDIQVRDEPLHWNVDVLWFRRLLDNLFQNVARHARSGQYIGIHT 400 Query: 408 EDREG-ERVIVIRDHGQGLGSGSESKGAGLGLSIVDLLLKRMELGWKVDSTKQGTTIVI 465 E+REG E V+VI DHG G+ S S +KG G+GL+IVD L + M L V S+++GT I I Sbjct: 401 EEREGLEGVLVISDHGPGIASDSGNKGTGIGLAIVDHLTREMGLESHVGSSEEGTRIRI 459 >Q2B1G0.1 Q2B1G0_9BACI Sensor protein EC=2.7.13.3 Length = 459 Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 189/462 (40%), Positives = 266/462 (57%), Gaps = 29/462 (6%) Query: 13 SLLSRYLLIIITALLFIP------AVLVIIPLTLNTVQEGVPKEYEKYQDISELEKIWHK 66 SL RYLLII+ AL+ +P +VL IP ++ QE P YE D +E +W + Sbjct: 5 SLQGRYLLIILLALVLMPITFPLVSVLFHIPFSM---QEHDPNVYE---DSKGMESMWKE 58 Query: 67 EAEGLLGSSPERINNXXXXXXXXXXXXXMFWVDGEGRTRLSLESADPQLWQQNERRPIPP 126 E + L G + E IN +FWVDG+G T+L L E+ IP Sbjct: 59 EGKKLGGRTDEEINERLRELKQKYNKASIFWVDGQGSTKLKLP----------EQIKIPA 108 Query: 127 VWTAAQAISFMKKSMAYNPKPMNIVAFVGDRAEAGEGFMVMQIPDALIERHYFD---GMS 183 W I FMK + P +V+F+G + EGFMV+Q+P ++ + Sbjct: 109 QWDPLYTIDFMKTNRGLEADPYTVVSFIG--SGKSEGFMVIQVPRGEMDTEWEQVSRSYD 166 Query: 184 LRFTLVMFVLFTGFMVVSLLFFIQIRKRLLRLETAMAFTGKDGVPQLIDPGKPDEIGRLE 243 + + F + F+ VS +FF +IR+RLLRL+ AM + G+P I K DEIG+LE Sbjct: 167 YYYLIATFGVLGLFLFVSWIFFYRIRQRLLRLQEAMDKPAEGGIPLPIAIDKKDEIGQLE 226 Query: 244 TAFNTMVTXXXXXXXXXXXXXXXXXXXVSDLSHDLRTPLTVIRSHLHILGKEQLSGRGQE 303 AFN M+ +++LSHDLRTPLT IR H + L KE S +G+E Sbjct: 227 GAFNRMIDQLETGRQREREEEELRRQLIANLSHDLRTPLTTIRGHAYSLKKEITSEKGRE 286 Query: 304 SLKLMDERIENLGVLIENLLSYNLLSSGRMTLKPERKDILRLLRESAAAWYPLWEKEGFR 363 SL+L+D ++ LG LIENLLSY LL+SG+ PE+ DI+RL++ SAAAWYP++E EGF Sbjct: 287 SLELIDNKVNYLGQLIENLLSYTLLTSGKYPYNPEKTDIVRLVKTSAAAWYPVFENEGFE 346 Query: 364 IEIDLEGEPLYWNVDESWFRRILDNLFQNIVRHARSGLYVGVAVEDREGERVIVIRDHGQ 423 ++I+L + +YW++D W RILDNLFQNI+RHA G YVGV + D E E ++ ++D G Sbjct: 347 LDIELPDKSIYWDIDGQWMNRILDNLFQNILRHAAQGRYVGVLL-DAEKE-ILAVKDKGP 404 Query: 424 GLGSGSESKGAGLGLSIVDLLLKRMELGWKVDSTKQGTTIVI 465 G+ S KGAG+GLSI L+LK M+L +++S+ GT +VI Sbjct: 405 GMTGESAGKGAGIGLSIAALMLKEMDLDLQINSSSCGTEMVI 446 >A4IPR0.1 A4IPR0_GEOTN Sensor protein EC=2.7.13.3 Length = 448 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 173/465 (37%), Positives = 259/465 (55%), Gaps = 28/465 (6%) Query: 6 SLRKLHASLLSRYLLIIITALLFIPAVLVIIPLTLNTVQEGVPKEYEKYQDISELEKIWH 65 S+++L SL ++Y+ II+TAL I L+II +L K+ E Q +EK WH Sbjct: 3 SVKRLR-SLTAKYMAIILTALFLI--YLLIIGTSLLVFNVYDHKDPETLQ----IEKAWH 55 Query: 66 KEAEGLLGSSPERINNXXXXXXXXXXXXXMFWVDGEGRTRLSLESADPQLWQQNERRPIP 125 ++A L E IN +FWVD GR +N IP Sbjct: 56 QDARSLKNPGSEDINRMFEKWQNRYPKARLFWVDSNGRLAAG----------RNLAADIP 105 Query: 126 PVWTAAQAISFMKKSMAYNPKPMNIVAFVGDRAEAGEGFMVMQIPDALIERHYFDGMSLR 185 W AA +F+K Y+ P ++AF + +A GF+V +I L++ + + + Sbjct: 106 KHWNAAYTANFIKAR--YDNDPFTVIAFPNN--DASYGFVVFEIERKLLQPAFTEANA-- 159 Query: 186 FTLVMFVLFTG---FMVVSLLFFIQIRKRLLRLETAMAFTGKDGVPQLIDPGKPDEIGRL 242 + F++ G F+ VS LFF+ IRKRLL L+ AM DG+P I K DEIG+L Sbjct: 160 -DFMYFIVPGGIVLFVTVSYLFFLGIRKRLLYLQQAMEIRDVDGLPVAITVRKQDEIGQL 218 Query: 243 ETAFNTMVTXXXXXXXXXXXXXXXXXXXVSDLSHDLRTPLTVIRSHLHILGKEQLSGRGQ 302 E AFN MV +++LSHDLRTPLT IR+H + L KE L+ + Sbjct: 219 EMAFNQMVDELRESRKREEAEEQLRKELIANLSHDLRTPLTKIRAHAYTLEKEALTPVAR 278 Query: 303 ESLKLMDERIENLGVLIENLLSYNLLSSGRMTLKPERKDILRLLRESAAAWYPLWEKEGF 362 +++ ++++ + + LIENL+SY LL++ ++ +P D++RL R AAWYP +EKEGF Sbjct: 279 QAVNMIEQSVSKMDRLIENLISYTLLNAKKLKYEPTPTDVVRLARSFIAAWYPAFEKEGF 338 Query: 363 RIEIDLEG-EPLYWNVDESWFRRILDNLFQNIVRHARSGLYVGVAVEDREGERVIVIRDH 421 I++ L+ E +WNVD W RI DNLFQN++RHA+ G Y+G+ + + +V+ D Sbjct: 339 FIDVQLDDLEQKHWNVDPLWMERIFDNLFQNVIRHAKDGKYIGLKTKKTDSYDALVVLDR 398 Query: 422 GQGLGSGSESKGAGLGLSIVDLLLKRMELGWKVDSTKQGTTIVIL 466 G+G S KGAG+GL+IVDL++K+MEL WK++S++ GT I I+ Sbjct: 399 GKGFRHKSSEKGAGIGLAIVDLMVKKMELDWKIESSETGTIITII 443 >B4BNU1.1 B4BNU1_9BACI Sensor protein EC=2.7.13.3 Length = 448 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 173/465 (37%), Positives = 259/465 (55%), Gaps = 28/465 (6%) Query: 6 SLRKLHASLLSRYLLIIITALLFIPAVLVIIPLTLNTVQEGVPKEYEKYQDISELEKIWH 65 S+++L SL ++Y+ II+TAL I L+II +L K+ E Q +EK WH Sbjct: 3 SVKRLR-SLTAKYMAIILTALFLI--YLLIIGTSLLVFNVYDHKDPETLQ----IEKAWH 55 Query: 66 KEAEGLLGSSPERINNXXXXXXXXXXXXXMFWVDGEGRTRLSLESADPQLWQQNERRPIP 125 ++A L E IN +FWVD GR +N IP Sbjct: 56 QDARSLKNPGSEDINRMFEKWQNRYPKARLFWVDSNGRLAAG----------RNLAADIP 105 Query: 126 PVWTAAQAISFMKKSMAYNPKPMNIVAFVGDRAEAGEGFMVMQIPDALIERHYFDGMSLR 185 W AA +F+K Y+ P ++AF + +A GF+V +I L++ + + + Sbjct: 106 KHWNAAYTANFIKAR--YDNDPFTVIAFPNN--DASYGFVVFEIERKLLQPAFTEANA-- 159 Query: 186 FTLVMFVLFTG---FMVVSLLFFIQIRKRLLRLETAMAFTGKDGVPQLIDPGKPDEIGRL 242 + F++ G F+ VS LFF+ IRKRLL L+ AM DG+P I K DEIG+L Sbjct: 160 -DFMYFIVPGGIVLFVTVSYLFFLGIRKRLLYLQQAMEIRDVDGLPVAITVRKQDEIGQL 218 Query: 243 ETAFNTMVTXXXXXXXXXXXXXXXXXXXVSDLSHDLRTPLTVIRSHLHILGKEQLSGRGQ 302 E AFN MV +++LSHDLRTPLT IR+H + L KE L+ + Sbjct: 219 EMAFNQMVDELRESRKREEAEEQLRKELIANLSHDLRTPLTKIRAHAYTLEKEALTPVAR 278 Query: 303 ESLKLMDERIENLGVLIENLLSYNLLSSGRMTLKPERKDILRLLRESAAAWYPLWEKEGF 362 +++ ++++ + + LIENL+SY LL++ ++ +P D++RL R AAWYP +EKEGF Sbjct: 279 QAVNMIEQSVSKMDRLIENLISYTLLNAKKLKYEPTPTDVVRLARSFIAAWYPAFEKEGF 338 Query: 363 RIEIDLEG-EPLYWNVDESWFRRILDNLFQNIVRHARSGLYVGVAVEDREGERVIVIRDH 421 I++ L+ E +WNVD W RI DNLFQN++RHA+ G Y+G+ + + +V+ D Sbjct: 339 FIDVQLDDLEQKHWNVDPLWMERIFDNLFQNVIRHAKDGKYIGLKTKKTDSYDALVVLDR 398 Query: 422 GQGLGSGSESKGAGLGLSIVDLLLKRMELGWKVDSTKQGTTIVIL 466 G+G S KGAG+GL+IVDL++K+MEL WK++S++ GT I I+ Sbjct: 399 GKGFRHKSSEKGAGIGLAIVDLMVKKMELDWKIESSETGTIITII 443 >A3I6V6.1 A3I6V6_9BACI Sensor protein EC=2.7.13.3 Length = 460 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 176/471 (37%), Positives = 254/471 (53%), Gaps = 26/471 (5%) Query: 9 KLHASLLSRYLLIIITALLFIP-AVLVIIPLTLNTVQEGVPKEYEKYQDISELEKIWHKE 67 K SLL++Y+LIII AL + + + L + GV + K SE+E+ WH + Sbjct: 2 KFFRSLLAKYMLIIILALSIVQISYMGTAMFVLGITKTGVGEFSSKVLLESEIEEQWHAQ 61 Query: 68 AEGLLGSSPERINNXXXXXXXXXXXXXMFWVDGEGRTRLSLESADPQLWQQNERRPIPPV 127 ++ + S + I MFWV G ++ N + +P Sbjct: 62 SKNINNVSNDAITQLFQKWQEQLPTASMFWVSEYGTLLTTV----------NVQEELPAK 111 Query: 128 WTAAQAISFMKKSMAYNPKPMNIVAFVGDRAEAGEGFMVMQIP-----DALIERHYFDGM 182 WT A F+K+ Y P ++AF+GD + GF+V+++P LI + G Sbjct: 112 WTPAFTTKFIKQR--YGGDPFTVIAFLGD--DVSNGFIVLEVPRNVFNPPLINIYENYGN 167 Query: 183 SLRFTLVMFVLFTGFMVVSLLFFIQIRKRLLRLETAMAFTGKDGVPQLIDPGKPDEIGRL 242 L F ++ +LF F+VVSLLFF IRKRLL L+ AM DG+P I K DEIG+L Sbjct: 168 LLFFGVIAIILF--FIVVSLLFFKGIRKRLLHLQDAMEIRDVDGLPIEIHVKKKDEIGQL 225 Query: 243 ETAFNTMVTXXXXXXXXXXXXXXXXXXXVSDLSHDLRTPLTVIRSHLHILGKEQLSGRGQ 302 E +FN MV +++LSHDLRTPLT +R+ + + KE LS G+ Sbjct: 226 EHSFNRMVCELRESKQRQQKEEQLRRELIANLSHDLRTPLTKVRAQSYSISKETLSEEGK 285 Query: 303 ESLKLMDERIENLGVLIENLLSYNLLSSGRMTLKPERKDILRLLRESAAAWYPLWEKEGF 362 ++L+ M+ I N+ LIENL+SY LL + + +P+ + +R +RE WYP++E+EGF Sbjct: 286 QALRAMETSIVNIDALIENLMSYTLLMASKYKFEPKEINAIRFVREHLTTWYPVFEREGF 345 Query: 363 RIEIDLEG-EPLYWNVDESWFRRILDNLFQNIVRHARSGLYVGVAVEDREGERVIVIRDH 421 I+I+L+ E W VD W RILDNLFQN++RHA SG Y+GV E +I DH Sbjct: 346 TIDIELQAFEHHEWCVDPIWLGRILDNLFQNVLRHANSGKYIGVKTESTASYTAFIIEDH 405 Query: 422 GQGLGSGSESKGAGLGLSIVDLLLKRMELGWKVDSTKQGTTIVILSLPHGN 472 G G+ + S +KGAG+GLSIVD+++K M L W + S GT I+I H N Sbjct: 406 GNGMKNESNAKGAGIGLSIVDVMVKGMHLEWDICSDPSGTKIII---KHAN 453 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,687,770,676 Number of extensions: 108038001 Number of successful extensions: 346731 Number of sequences better than 1.0e-05: 6600 Number of HSP's gapped: 351204 Number of HSP's successfully gapped: 6610 Length of query: 476 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 336 Effective length of database: 1,741,754,103 Effective search space: 585229378608 Effective search space used: 585229378608 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)