BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0147.0021.p
         (134 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DEZ4.1 B1DEZ4_9BACL Transcriptional regulator, ArsR family          162   1e-38
B1DF71.1 B1DF71_9BACL Transcriptional regulator, ArsR family          152   9e-36
C1T9X2.1 C1T9X2_9FIRM Transcriptional regulator, ArsR family          124   2e-27
B2A185.1 B2A185_NATTJ Transcriptional regulator, ArsR family          120   6e-26
A1HUB0.1 A1HUB0_9FIRM Transcriptional regulator, ArsR family          118   1e-25

>B1DEZ4.1 B1DEZ4_9BACL Transcriptional regulator, ArsR family
          Length = 122

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/120 (62%), Positives = 96/120 (80%)

Query: 14  MEPAALEECDNTCNGSELEPESMALILPDRGTTDKMAEMFKALGDPTRVRMIYALSQREL 73
           ME    ++CD+TC+G++L  +++A    +  T   +AE+FKALGDPTRV+MIYAL  REL
Sbjct: 1   MEKMIDDQCDDTCHGTDLHSDNLANARMEEPTAVDLAELFKALGDPTRVKMIYALLDREL 60

Query: 74  CVHDLSSILDMGQSAVSHQLRYLRNLRIVKRRKEGKTVYYSLNDTHVEQIFLQTHEHIRH 133
           CVHDL  +LDM QSAVSHQLRYLRN+RIVKRRK GKTVYYSL+D HV++IF QT +H++H
Sbjct: 61  CVHDLCQVLDMAQSAVSHQLRYLRNVRIVKRRKAGKTVYYSLDDDHVKEIFTQTLQHVQH 120


>B1DF71.1 B1DF71_9BACL Transcriptional regulator, ArsR family
          Length = 122

 Score =  152 bits (384), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 70/121 (57%), Positives = 95/121 (78%), Gaps = 2/121 (1%)

Query: 15  EPAALEECDNTCNGSELEPESMA-LILPDRGTTDKMAEMFKALGDPTRVRMIYALSQREL 73
           +   ++ CD TCNG+ ++   +   ++P+   TD +A++FKALGDPTRVR+I+ L Q EL
Sbjct: 3   DKTLVDACDETCNGTAVDITKIQEKLIPESAATD-LADLFKALGDPTRVRIIHTLLQSEL 61

Query: 74  CVHDLSSILDMGQSAVSHQLRYLRNLRIVKRRKEGKTVYYSLNDTHVEQIFLQTHEHIRH 133
           CVHDL  +L MGQSA+SHQLR LRN+RIVKRRK GKTV+YSL+D HVEQIF+QT +H++H
Sbjct: 62  CVHDLCEVLGMGQSAISHQLRSLRNMRIVKRRKVGKTVFYSLDDEHVEQIFVQTLQHLKH 121

Query: 134 E 134
           +
Sbjct: 122 D 122


>C1T9X2.1 C1T9X2_9FIRM Transcriptional regulator, ArsR family
          Length = 119

 Score =  124 bits (312), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 81/113 (71%), Gaps = 1/113 (0%)

Query: 22  CDNTCNGSELEPESMALILPDRGTTDKMAEMFKALGDPTRVRMIYALSQRELCVHDLSSI 81
           C+  C  +E+  E +   LPD     K++ ++KALGDPTR ++++ L Q E+CV D+S+I
Sbjct: 8   CEIECINTEVVNE-IKKYLPDIEEVQKLSAIYKALGDPTRFKILFCLKQEEMCVCDISAI 66

Query: 82  LDMGQSAVSHQLRYLRNLRIVKRRKEGKTVYYSLNDTHVEQIFLQTHEHIRHE 134
           LDM QSA+SHQLR LRNLRIVK RKEGK V+YSL+D H+ +I  +   HIRHE
Sbjct: 67  LDMSQSAISHQLRVLRNLRIVKYRKEGKMVFYSLDDKHIFRILDEGINHIRHE 119


>B2A185.1 B2A185_NATTJ Transcriptional regulator, ArsR family
          Length = 118

 Score =  120 bits (300), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 80/113 (70%), Gaps = 1/113 (0%)

Query: 22  CDNTCNGSELEPESMALILPDRGTTDKMAEMFKALGDPTRVRMIYALSQRELCVHDLSSI 81
           C   C  SE        +L ++   DKMAE FK L DPTRV++++AL+ +ELCV D++  
Sbjct: 7   CQEFCFDSEAVEHVQKHMLNEQDI-DKMAETFKILADPTRVKILHALAHKELCVCDIAVT 65

Query: 82  LDMGQSAVSHQLRYLRNLRIVKRRKEGKTVYYSLNDTHVEQIFLQTHEHIRHE 134
           LDM  SAVSHQLR L++ R+VK+R+EGK VYY L+D HVEQ+F +T EHI+H+
Sbjct: 66  LDMKVSAVSHQLRLLKSARLVKQRREGKNVYYQLDDHHVEQLFEKTLEHIKHQ 118


>A1HUB0.1 A1HUB0_9FIRM Transcriptional regulator, ArsR family
          Length = 120

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 83/121 (68%), Gaps = 1/121 (0%)

Query: 14  MEPAALEECDNTCNGSELEPESMALILPDRGTTDKMAEMFKALGDPTRVRMIYALSQREL 73
           M+P   + C+  C   ++   + A I+ D     ++A++FK LGD TRV+++  LS+REL
Sbjct: 1   MKPCECDVCEELCEHPQVICLAKAEIIADEDA-QRVADLFKILGDTTRVKILQILSKREL 59

Query: 74  CVHDLSSILDMGQSAVSHQLRYLRNLRIVKRRKEGKTVYYSLNDTHVEQIFLQTHEHIRH 133
           CV D+++++ MGQSAVSHQLR LRN R+VK RKEGK  +YSLND H+  +  Q  EH++H
Sbjct: 60  CVCDIAAVVGMGQSAVSHQLRLLRNARLVKFRKEGKMAWYSLNDEHIATLLAQGIEHVQH 119

Query: 134 E 134
           +
Sbjct: 120 D 120


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 761,886,617
Number of extensions: 26254930
Number of successful extensions: 68108
Number of sequences better than 1.0e-05: 1454
Number of HSP's gapped: 68537
Number of HSP's successfully gapped: 1454
Length of query: 134
Length of database: 3,060,696,203
Length adjustment: 98
Effective length of query: 36
Effective length of database: 2,137,436,733
Effective search space: 76947722388
Effective search space used: 76947722388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)