BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0147.0017.p (675 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8A3.1 C0Z8A3_BREBN Probable methyl-accepting chemotaxis protein 271 1e-70 B1DMK1.1 B1DMK1_9BACL Methyl-accepting chemotaxis sensory transd... 259 7e-67 C0ZI10.1 C0ZI10_BREBN Putative methyl-accepting chemotaxis protein 247 3e-63 A6TUW6.1 A6TUW6_ALKMQ Methyl-accepting chemotaxis sensory transd... 243 6e-62 C3L007.1 C3L007_CLOB6 Methyl-accepting chemotaxis protein 235 1e-59 >C0Z8A3.1 C0Z8A3_BREBN Probable methyl-accepting chemotaxis protein Length = 662 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 191/612 (31%), Positives = 328/612 (53%), Gaps = 15/612 (2%) Query: 72 IDEWLKSRTSAVQELIAQHPEFDTAQPQSIFPVVKILEESDSQSEGYSVINKDGLLT-NT 130 +D++L R + +Q ++A+ + + + ++ E +G + I DG +T +T Sbjct: 57 MDQYLDRRMTEIQ-ILARTSDIQSDDAAAKNEFIRKFTEEMKLYDGNTFIASDGKVTADT 115 Query: 131 M--NLTADMAKSAYFLKAKESLAPAMGDMSYLEPLKKYIIPLIVPVVDKKQQFSGAIAFS 188 ++ ++ + +F + P+ D+ + I + PV K + G + Sbjct: 116 FPKSVGINLGERQFFKDGMQD-KPSFSDVLVAKTTGNRSIIVASPVKGKNNEKLGVLTGL 174 Query: 189 VT-PDILNEMSKSIHVAESGYGYVVSGKGDYYAYSDMSRIGKNMADYAKEPELKKAVTAM 247 V D K + V GY +V K + IGK +A+ A L + +T + Sbjct: 175 VNVDDFTATFLKDLKVGNDGYPILVDNKNQIQYHPTQDLIGKPLAESA----LPQPLTEI 230 Query: 248 LSR---ESGSETYTGEDGKTIITYYKTIPGTDWKLMINVPKSEIFAKVNAAQRXXXXXXX 304 L E GS +Y+ ++GK + Y IP T++ L +++P I + V++ Sbjct: 231 LQSGKTEKGSYSYS-DNGKEYVVTYSPIPKTNFGLYLHIPVESITSAVSSVTTMVRIIVI 289 Query: 305 XXXXXXXXXXXYLTRMVVKPLVAISGVMKRVAEGHLS-ERVEVRSGDEIGQMSKSINDTV 363 ++R + +P+ A++ V R++EG L+ + +++R+ DE+GQ+S+S+N V Sbjct: 290 VVVAVVTAIAYAVSRQISRPIAAVASVANRISEGELTVQPLQIRTKDEVGQLSQSVNTMV 349 Query: 364 SSLSGIVGTIDATVLQVAAAAEGLLEYANHSSNTSAEIATVIQEVAQGMEEQFKGSEQSA 423 +L I+ ++ T +A++AE L A+H+S + +IA IQEVA G E+Q K E+S Sbjct: 350 LNLRTIIQQVNDTASDLASSAEELSVNADHTSKATEQIAITIQEVAYGAEKQVKSVEESV 409 Query: 424 RATEEMAVGLQRIAESSVSVSDQAETVSAEVQNGYLEIQSTLEQMTVITTTAGQTADLIQ 483 A + ++ G Q++A ++ ++ A S G +Q + QM I T G AD+++ Sbjct: 410 TAIQGVSTGAQQVATNAQQAAESAMGASQIAVEGNQALQVVISQMQSIENTVGNIADIVK 469 Query: 484 TLTQQSEHIGQIIDVISEIANQTGLLSLNASIEAARAGEHGRGFGVVANEVKKLAERTNA 543 L S+ IGQI+ VI+ IA QT LL+LNA+IEAARAGE GRGF VVA+EV+KLAE++ Sbjct: 470 RLGNSSQEIGQIVQVITAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAEQSAE 529 Query: 544 SIVDIVDLIKQIQASTTNAAQSMEKSIAEIGDGMGKMKNVGISFEHIRSSIREVSMQIQD 603 S I LI IQ + A SME+ E+ G+ + N G SFE I+ ++ +V+ QIQ+ Sbjct: 530 SAQQIKLLITTIQLESNQAVLSMEQGTKEVATGLTVVNNAGKSFEQIQDAVTQVASQIQE 589 Query: 604 VSAINEEMSAGTEEITASVSDMLTIAKDSAENAQAVSYASSEQMELMKKVVDSAKSLNEM 663 V A +E+MS GT+++ VS + +A++SA+ Q+VS A+ EQ+ M++V S+ SL + Sbjct: 590 VKAYSEQMSFGTKQVVELVSVIEEVAENSADGTQSVSAATEEQLAAMEEVSSSSTSLARI 649 Query: 664 MSTLKGEIEKFR 675 L+ + KF+ Sbjct: 650 AEELQSHVSKFK 661 >B1DMK1.1 B1DMK1_9BACL Methyl-accepting chemotaxis sensory transducer Length = 674 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 192/615 (31%), Positives = 322/615 (52%), Gaps = 17/615 (2%) Query: 69 TSRIDEWLKSRTSAVQEL--IAQHPEFDTAQPQSIFPVVKILEESDSQSEGYSV-INKDG 125 T+R+DE ++S+ S + L + Q+ D + Q + I E + S GYS+ ++ Sbjct: 67 TARLDEEVQSKVSKINALAGVGQYFGEDAEKHQELIEHF-IKENPELMSPGYSLDMSGKN 125 Query: 126 LLTNTMNLTADMAKSAYFLKAKESLAPAMGDMSYLEPLKKYIIPLIVPVV-----DKKQQ 180 + D+++ YF E G+++ +PL + P V +V + + Sbjct: 126 FVATQSGDKIDLSERPYFKSLSE------GNLTVSDPLVNKLDPSKVSIVIAAPLKQDGK 179 Query: 181 FSGAIAFSVTPDILNEMSKSIHVAESGYGYVVSGKGDYYAYSDMSRIGKNMADYAKEPEL 240 G AF + + V ++GY ++ G ++ + K PE Sbjct: 180 AYGFYAFGYEINKAAAIVSETKVGKTGYAILLDSNGLVVSHPKEDLVMKKTVYDMNMPET 239 Query: 241 KKAVTAMLSRESGSETYTGEDGKTIITYYKTIPGTDWKLMINVPKSEIFAKVNAAQRXXX 300 KA + + +Y K I Y + + +++ + E V Sbjct: 240 VKAFEMAKQGKDTNYSYIFNGEKKI--GYAEATRNGYVIQLSISEQEAMKPVTDMLWKTI 297 Query: 301 XXXXXXXXXXXXXXXYLTRMVVKPLVAISGVMKRVAEGHLSERVEVRSGDEIGQMSKSIN 360 + + KP+V IS V+K +A G L R+EV++ +E+GQ++ ++N Sbjct: 298 GVALAVTLLALIATYFSANQMAKPIVYISNVVKVLASGDLRPRLEVKARNELGQLADNMN 357 Query: 361 DTVSSLSGIVGTIDATVLQVAAAAEGLLEYANHSSNTSAEIATVIQEVAQGMEEQFKGSE 420 + + S S +G + Q+AA++E L + S + S+ I I VA E Q +E Sbjct: 358 EMLDSFSDTIGKVSFAAEQLAASSEELTASSIDSVDISSRIGEAIHNVAAAGENQMISAE 417 Query: 421 QSARATEEMAVGLQRIAESSVSVSDQAETVSAEVQNGYLEIQSTLEQMTVITTTAGQTAD 480 Q++ A EEMA G+QRIAESS V++ ++T EVQ G + + +EQM +I +A ++AD Sbjct: 418 QTSTAMEEMASGVQRIAESSSVVAEASQTSFDEVQLGQVAVTHAVEQMKLIHASAIKSAD 477 Query: 481 LIQTLTQQSEHIGQIIDVISEIANQTGLLSLNASIEAARAGEHGRGFGVVANEVKKLAER 540 ++ L +S IG I+ VI EI NQT LLSLNASIEAARAGEHGRGF VVANEVKKLAE+ Sbjct: 478 EVRELELKSNQIGSIVSVIQEITNQTQLLSLNASIEAARAGEHGRGFAVVANEVKKLAEQ 537 Query: 541 TNASIVDIVDLIKQIQASTTNAAQSMEKSIAEIGDGMGKMKNVGISFEHIRSSIREVSMQ 600 + S +I LI+++Q +T AA +M + + ++ G + G F + ++ +E+S Q Sbjct: 538 SAQSASEITALIQEVQGTTLRAAHAMNQGVNDVEIGSELINEAGEVFGRMTATFQEISSQ 597 Query: 601 IQDVSAINEEMSAGTEEITASVSDMLTIAKDSAENAQAVSYASSEQMELMKKVVDSAKSL 660 IQ+VSA +E+MSAGTEE+TAS+++++++ + + ++Q +S +S+Q+ MK + SA+ L Sbjct: 598 IQEVSAASEQMSAGTEEVTASMTEIVSMTQTTHNHSQDISQGASKQLSSMKDISASAEDL 657 Query: 661 NEMMSTLKGEIEKFR 675 + M L+ + KF+ Sbjct: 658 SHMAQHLQEVLSKFK 672 >C0ZI10.1 C0ZI10_BREBN Putative methyl-accepting chemotaxis protein Length = 680 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 176/530 (33%), Positives = 295/530 (55%), Gaps = 12/530 (2%) Query: 152 PAMGDMSYLEPLKKYIIPLIVPVVDKKQQFSGAIAFSVTPDI-LNEMSKSIH---VAESG 207 P + Y +P+ K +P++ + K G I+ + T DI L E++KSI V E+G Sbjct: 154 PYVWTEPYADPISK--VPMVTAIAPIK--VGGKISGTTTLDIGLTELNKSIENLKVGETG 209 Query: 208 YGYVVSGKGDYYAYSDMSR-IGKNMADYAKEPELKKAVTAMLSRESGSETYTGEDGKTII 266 YG++VS G Y ++ D + + M D + E L+ + + T G+T Sbjct: 210 YGFIVSKSGIYVSHRDAQKNLQVKMTDES-ETGLRDIANQITEATATGMTQATIAGQTQF 268 Query: 267 TYYKTIPGTDWKLMINVPKSEIFAKVNAAQRXXXXXXXXXXXXXXXXXX-YLTRMVVKPL 325 + I T L +P +EI V ++ R V +PL Sbjct: 269 VTFAPIGETGMTLATVMPAAEINGPVTQYFYISLIIFGVSISIFLVLLYWFINRQVARPL 328 Query: 326 VAI-SGVMKRVAEGHLSERVEVRSGDEIGQMSKSINDTVSSLSGIVGTIDATVLQVAAAA 384 + + + ++ V + L++ + +R DEIG ++ ++N ++ L G++ I QV + Sbjct: 329 LQLKASIVNLVEKKDLTQTIPIRRKDEIGDVATAVNVFIADLHGMMKNISGYTGQVGTVS 388 Query: 385 EGLLEYANHSSNTSAEIATVIQEVAQGMEEQFKGSEQSARATEEMAVGLQRIAESSVSVS 444 E + ++ + ++A+ QEVA G E Q +E+SARA EEMA+G+QRIAE+S +++ Sbjct: 389 ETSAKKSHEARLAFGQVASSFQEVAIGTENQQHSAEESARAMEEMAIGIQRIAEASSTMA 448 Query: 445 DQAETVSAEVQNGYLEIQSTLEQMTVITTTAGQTADLIQTLTQQSEHIGQIIDVISEIAN 504 + ++ ++ E G ++ QM I + +AD++++L +S I QI++VI+ IA+ Sbjct: 449 ESSKHMANEAVTGNQSVEKVSGQMDSINRSVSHSADVVRSLDSRSAEISQIVEVIASIAS 508 Query: 505 QTGLLSLNASIEAARAGEHGRGFGVVANEVKKLAERTNASIVDIVDLIKQIQASTTNAAQ 564 QT LL+LNA+IEAARAGE GRGF VVA+EV+KLAE++N S I +LI +IQ TT+A Q Sbjct: 509 QTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAEQSNDSANQIANLITEIQRETTSAVQ 568 Query: 565 SMEKSIAEIGDGMGKMKNVGISFEHIRSSIREVSMQIQDVSAINEEMSAGTEEITASVSD 624 +M++ E+ G+ G +F I S ++V+ QIQ++S++ E+MSA TE++TAS+ Sbjct: 569 AMDEGTREVETGIQIAYETGEAFRRIMDSTQDVADQIQEISSVAEQMSAATEQVTASILQ 628 Query: 625 MLTIAKDSAENAQAVSYASSEQMELMKKVVDSAKSLNEMMSTLKGEIEKF 674 + IAK+SA +A V+ ++ EQ M ++ SA+ LN+M L+ I +F Sbjct: 629 LSLIAKESAASASGVAASTEEQRISMDQLSTSAEQLNQMARELQQMINRF 678 >A6TUW6.1 A6TUW6_ALKMQ Methyl-accepting chemotaxis sensory transducer Length = 665 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 162/631 (25%), Positives = 319/631 (50%), Gaps = 7/631 (1%) Query: 49 FGGVTRSNSEELATKILEMNTSRIDEWLKSRTSAVQELIAQHPEFDTAQPQSIFPVVKIL 108 F ++N E+ T + E+N + + +W+ S+ + + +PEF I V+ L Sbjct: 37 FSSFLQNNIEQQQTALAELNRNSLSDWIDSKADQLSNNLDAYPEFKEMDLDYIQSVLHHL 96 Query: 109 EESDSQSEGYSVINKDGLLTNTMNLTADMAKSAYFLKAKESLAPAMGDMSYLEPLKKYII 168 E +DS E SV++KDG N + ++ + YF E+ A+ D+ I Sbjct: 97 EVNDSDVELASVVDKDG---NIGVASINLKERDYFKAVAETKEYAVSDIIINAETGNKQI 153 Query: 169 PLIVPVVDKKQQFSGAIAFSVTPDILNEMSKSIHVAESGYGYVVSGKGDYYAYSDMSRIG 228 + VPV+D+ F+G IA V D L++ I +A++G+G+++S GD+ + D IG Sbjct: 154 VVAVPVLDQDNNFNGLIASYVRLDALSDTVGKIEIADTGFGFLLSSNGDFIYHPDQDIIG 213 Query: 229 KNMADYAKEPELKKAV-TAMLSRESGSETYTGEDGKTIITYYKTIPGTDWKLMINVPKSE 287 +N ++ E +A +LS ++G TYT G I + T+ + WK+++ P SE Sbjct: 214 ENYSNVGMNEETLQAFEKEILSNDTGYVTYTDGHGDEKIAAFSTVAKSGWKIVVTAPTSE 273 Query: 288 IFAKVNAAQRXXXXXXXXXXXXXXXXXXYLTRMVVKPLVAISGVMKRVAEGHLSERVE-- 345 +++++ R +L ++ KP+ +S + +A ++ V Sbjct: 274 VYSEIQVMARSSALLILVAVLLVIVSAFFLANLLAKPITEVSKHLNILANADFTQAVPEN 333 Query: 346 -VRSGDEIGQMSKSINDTVSSLSGIVGTIDATVLQVAAAAEGLLEYANHSSNTSAEIATV 404 ++ DE+G + + SL I+ ++ Q+++ +E L++ A+ + S +IAT Sbjct: 334 LIKRKDEVGDLVHATKKMQDSLIDIIKSVSDATDQLSSNSEYLIQSASEVTEGSKQIATT 393 Query: 405 IQEVAQGMEEQFKGSEQSARATEEMAVGLQRIAESSVSVSDQAETVSAEVQNGYLEIQST 464 +QE++ G E Q S + E + + S++ + ++++ + + + G ++ + Sbjct: 394 MQELSLGAESQATSSGTISELMEGFVEKVTEASNSTLHMRNESQGIIEQTEKGQESMEQS 453 Query: 465 LEQMTVITTTAGQTADLIQTLTQQSEHIGQIIDVISEIANQTGLLSLNASIEAARAGEHG 524 + QM ++ + +++L QQ+ I ++++VI IA QT LL+LNA+IEAARAGEHG Sbjct: 454 IIQMEMVHQIVQDGVEKVRSLDQQANQISKLVEVIQGIAGQTNLLALNAAIEAARAGEHG 513 Query: 525 RGFGVVANEVKKLAERTNASIVDIVDLIKQIQASTTNAAQSMEKSIAEIGDGMGKMKNVG 584 +GF VVANEV+KLAE +S+ DI ++ IQ + + S++ + +G ++ G Sbjct: 514 KGFAVVANEVRKLAEEVTSSVGDITKIVTGIQKESNDVMNSLQNGYEVVEEGSKQITITG 573 Query: 585 ISFEHIRSSIREVSMQIQDVSAINEEMSAGTEEITASVSDMLTIAKDSAENAQAVSYASS 644 F I S+ + Q +S+ ++ +E ++ S ++ +++++SA + + +S Sbjct: 574 ERFTGINQSVSTMVTMFQSISSHLAVIAKDSETMSQSFVEITSVSEESAAGIEQTAASSE 633 Query: 645 EQMELMKKVVDSAKSLNEMMSTLKGEIEKFR 675 + + M++V SA L + L ++ F+ Sbjct: 634 QLLASMEEVTHSADQLARLAEDLLTKVNHFK 664 >C3L007.1 C3L007_CLOB6 Methyl-accepting chemotaxis protein Length = 684 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 157/535 (29%), Positives = 289/535 (54%), Gaps = 2/535 (0%) Query: 142 YFLKAKESLAPAMGDMSYLEPLKKY-IIPLIVPVVDKKQQFSGAIAFSVTPDILNEMSKS 200 ++ AK S A + YL+ L ++ DK G + D L +M + Sbjct: 150 WYKSAKSSTASCVWSKPYLDELSNITMVSTSAAFKDKSGNLLGVATADINLDRLQKMIAN 209 Query: 201 IHVAESGYGYVVSGKGDYYAYSDMSRIGKNMADYAKEPELKKAVTAMLSRESGSETYTGE 260 + ++G ++ G+Y + S+I K E L ML+ + G+ TY E Sbjct: 210 VKFGKTGKAILLDKDGNYITNPNKSKIIKMNITKEAENSLSTLGKEMLANKKGTGTYKEE 269 Query: 261 DGKTIITYYKTIPGTDWKLMINVPKSEIFAKVNAAQRXXXXXXXXXXXXXXXXXXYLTRM 320 D K ++ YY +IP T W + +++ +SE+ A + + + Sbjct: 270 DVKKLV-YYDSIPETGWIIALSIDQSEVTAPLKQLLIKSIVFILIALALIIIFILWFSNY 328 Query: 321 VVKPLVAISGVMKRVAEGHLSERVEVRSGDEIGQMSKSINDTVSSLSGIVGTIDATVLQV 380 + K + ++ + ++ G L++ + + S DE+G M K++N ++L+ I+ + ++ + Sbjct: 329 LTKNINRVNIFSETISNGDLTKSLSIDSKDELGAMGKNLNSMKNTLNNIINNFNISLKDI 388 Query: 381 AAAAEGLLEYANHSSNTSAEIATVIQEVAQGMEEQFKGSEQSARATEEMAVGLQRIAESS 440 + +E L A + + S +IA I ++A G E Q K S+ S + EE+ G+++I+++ Sbjct: 389 VSISEELSASAEQTQSASDQIAQSISDIATGSETQSKTSQDSVKNLEEIYKGMEQISDNV 448 Query: 441 VSVSDQAETVSAEVQNGYLEIQSTLEQMTVITTTAGQTADLIQTLTQQSEHIGQIIDVIS 500 SV++ + + + G + + + + +M I + +A+++ TL ++S +I I+ +I+ Sbjct: 449 QSVTNYSMATYKKAEEGNITVSTAINKMKDIEESVIDSANIVNTLEEKSNNIDNIVSLIT 508 Query: 501 EIANQTGLLSLNASIEAARAGEHGRGFGVVANEVKKLAERTNASIVDIVDLIKQIQASTT 560 I+ QT LL+LNA+IEAARAGE G+GF VVA EV+KLAE ++AS I D+IK++Q+ T Sbjct: 509 SISEQTNLLALNAAIEAARAGEAGKGFAVVAEEVRKLAEESSASAGSIGDIIKEVQSDIT 568 Query: 561 NAAQSMEKSIAEIGDGMGKMKNVGISFEHIRSSIREVSMQIQDVSAINEEMSAGTEEITA 620 SM+ + +G+ ++N SFE+I SSI +VS ++QDVSA+ EE++A TE + Sbjct: 569 KVVNSMKIETNNVNEGIVIIQNTKSSFENILSSIDKVSREMQDVSAVVEEITASTETVVN 628 Query: 621 SVSDMLTIAKDSAENAQAVSYASSEQMELMKKVVDSAKSLNEMMSTLKGEIEKFR 675 S+ + +I K+S+ N Q V+ ++ EQ +MK+V + A L++M L+ +I F+ Sbjct: 629 SLEKIDSIIKESSSNTQNVAASAEEQTAIMKEVAEVATKLSQMSLKLEKDINIFK 683 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.124 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,135,445,093 Number of extensions: 114999372 Number of successful extensions: 456809 Number of sequences better than 1.0e-05: 12774 Number of HSP's gapped: 404125 Number of HSP's successfully gapped: 13094 Length of query: 675 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 532 Effective length of database: 1,713,491,058 Effective search space: 911577242856 Effective search space used: 911577242856 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 135 (56.6 bits)