BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0147.0015.p (172 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4I4.1 B3K4I4_9BACI Putative uncharacterized protein 189 6e-47 C1PTI5.1 C1PTI5_ALIAC Membrane protein involved in cytochrome C ... 140 3e-32 B7DM61.1 B7DM61_9BACL Putative uncharacterized protein 139 6e-32 C2ZN74.1 C2ZN74_BACCE Putative uncharacterized protein 119 9e-26 C2Z6I7.1 C2Z6I7_BACCE Putative uncharacterized protein 119 9e-26 >B3K4I4.1 B3K4I4_9BACI Putative uncharacterized protein Length = 163 Score = 189 bits (481), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 92/161 (57%), Positives = 122/161 (75%) Query: 1 MGNINPSLLHVGSTLGAVFMALMVIFIRLKASARPVTIRKIWIPPLGMSTGFAMFVVPEV 60 M N + +L +GST+ + MAL VIFIR+KAS RPVT++KI IPP+ MSTGF MFV P+V Sbjct: 1 MVNFDSPILQIGSTIAMLVMALAVIFIRMKASNRPVTVKKIIIPPVAMSTGFLMFVEPQV 60 Query: 61 RFPWWWAVAAFLVGWFIFAYPLMRSTKFEAREGLIYARRSKSFAFIXXXXXXIRTVLHEF 120 R P WWA AFLVGWFIF+YPL+RSTKFE +G I+ +RSKSF +I +R +LH + Sbjct: 61 RIPLWWAGIAFLVGWFIFSYPLIRSTKFEKVDGQIFMQRSKSFVYILLGLLAVRLLLHGY 120 Query: 121 INQYVSIPQSGGLFFILAFGMILHWRVFMYKRYIRMVPPHA 161 I Q++SIPQ+ LFF+LA+GMI+HWR+ MY++Y + + P A Sbjct: 121 IEQHISIPQTAALFFMLAYGMIVHWRISMYRQYQQFMTPEA 161 >C1PTI5.1 C1PTI5_ALIAC Membrane protein involved in cytochrome C biogenesis Length = 171 Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/145 (48%), Positives = 99/145 (68%), Gaps = 1/145 (0%) Query: 13 STLGAVFMALMVIFIRLKASARPVTIRKIWIPPLGMSTGFAMFVVPEVRFPWWWAVAAFL 72 +T+ AV A+ VIF+RL+AS RP RKI IPPL MSTGF M+V P R P +AVAAFL Sbjct: 11 ATVVAVVFAITVIFVRLRASKRPTNARKILIPPLAMSTGFLMYVFPFTREPILYAVAAFL 70 Query: 73 VGWFIFAYPLMRSTKFEAREGLIYARRSKSFAFIXXXXXXIRTVLHEFINQYVSIPQSGG 132 VG +F+YPL+ ++ F E +Y +RS++F +I +R VLH + +YV + Q+G Sbjct: 71 VGC-MFSYPLIATSHFYVGEDGVYLKRSRAFIYILLGLLVVRIVLHSVVERYVDVYQTGS 129 Query: 133 LFFILAFGMILHWRVFMYKRYIRMV 157 LFF LAFGM++ WR+ M+ RY R++ Sbjct: 130 LFFCLAFGMLVPWRIAMFVRYKRLI 154 >B7DM61.1 B7DM61_9BACL Putative uncharacterized protein Length = 171 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 70/145 (48%), Positives = 98/145 (67%), Gaps = 1/145 (0%) Query: 13 STLGAVFMALMVIFIRLKASARPVTIRKIWIPPLGMSTGFAMFVVPEVRFPWWWAVAAFL 72 +T+ AV A+ VIF+RL+AS RP RKI IPPL MSTGF M+V P R P +AVAAFL Sbjct: 11 ATVVAVVFAITVIFVRLRASKRPTNARKILIPPLAMSTGFLMYVFPFTREPILYAVAAFL 70 Query: 73 VGWFIFAYPLMRSTKFEAREGLIYARRSKSFAFIXXXXXXIRTVLHEFINQYVSIPQSGG 132 VG +F+YPL+ ++ F E +Y +RS++F +I +R LH + +YV + Q+G Sbjct: 71 VGC-MFSYPLIATSHFYVGEDGVYLKRSRAFIYILLGLLVVRIALHSLVERYVDVYQTGS 129 Query: 133 LFFILAFGMILHWRVFMYKRYIRMV 157 LFF LAFGM++ WR+ M+ RY R++ Sbjct: 130 LFFCLAFGMLVPWRIAMFVRYKRLI 154 >C2ZN74.1 C2ZN74_BACCE Putative uncharacterized protein Length = 163 Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 100/156 (64%), Gaps = 4/156 (2%) Query: 1 MGNINPSLLHVGSTLGAVFMALMVIFIRLKASARPVTIRKIWIPPLGMSTGFAMFVVPEV 60 M N++ +LL S++ AV MA+ V+F+R K++ +PVT +KI +PP+ MSTG +M+ +PE Sbjct: 1 MENMSLALL---SSIVAVCMAVGVMFLRFKSAKKPVTKKKIILPPIFMSTGASMYFLPEF 57 Query: 61 RFPWWWAVAAFLVGWFIFAYPLMRSTKFEAREGLIYARRSKSFAFIXXXXXXIRTVLHEF 120 R V A VG IF+ L+++TKFE R IY + SK+F FI IR L + Sbjct: 58 RLTSLEIVEAISVG-LIFSIFLIKTTKFEIRGEHIYMKPSKAFIFILVGLLAIRVALKSY 116 Query: 121 INQYVSIPQSGGLFFILAFGMILHWRVFMYKRYIRM 156 ++Q + + Q G+FF+LAF MI+ WR+ MY+ Y ++ Sbjct: 117 LSQSIDLTQLSGMFFLLAFAMIISWRIAMYRSYTKL 152 >C2Z6I7.1 C2Z6I7_BACCE Putative uncharacterized protein Length = 163 Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 100/156 (64%), Gaps = 4/156 (2%) Query: 1 MGNINPSLLHVGSTLGAVFMALMVIFIRLKASARPVTIRKIWIPPLGMSTGFAMFVVPEV 60 M N++ +LL S++ AV MA+ V+F+R K++ +PVT +KI +PP+ MSTG +M+ +PE Sbjct: 1 MENMSLALL---SSIVAVCMAVGVMFLRFKSAKKPVTKKKIILPPIFMSTGASMYFLPEF 57 Query: 61 RFPWWWAVAAFLVGWFIFAYPLMRSTKFEAREGLIYARRSKSFAFIXXXXXXIRTVLHEF 120 R V A VG IF+ L+++TKFE R IY + SK+F FI IR L + Sbjct: 58 RLTSLEIVEAISVG-LIFSIFLIKTTKFEIRGEHIYMKPSKAFIFILVGLLAIRVALKSY 116 Query: 121 INQYVSIPQSGGLFFILAFGMILHWRVFMYKRYIRM 156 ++Q + + Q G+FF+LAF MI+ WR+ MY+ Y ++ Sbjct: 117 LSQSIDLTQLSGMFFLLAFAMIISWRIAMYRSYTKL 152 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.333 0.144 0.478 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 974,772,639 Number of extensions: 35218766 Number of successful extensions: 160643 Number of sequences better than 1.0e-05: 188 Number of HSP's gapped: 160497 Number of HSP's successfully gapped: 188 Length of query: 172 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 46 Effective length of database: 1,873,648,313 Effective search space: 86187822398 Effective search space used: 86187822398 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 126 (53.1 bits)