BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0147.0008.p
         (90 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K4J9.1 B3K4J9_9BACI Putative uncharacterized protein                 98   2e-19
B1DIY9.1 B1DIY9_9BACL Putative uncharacterized protein                 66   1e-09
C0ZJM5.1 C0ZJM5_BREBN Putative uncharacterized protein                 57   5e-07
Q5WKG9.1 Q5WKG9_BACSK Putative uncharacterized protein                 54   4e-06

>B3K4J9.1 B3K4J9_9BACI Putative uncharacterized protein
          Length = 73

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 59/75 (78%), Gaps = 9/75 (12%)

Query: 18 MAKPLKVDEVWLARIAELLDNMEFGSLHIVVHEGQIVQMERTERKRFENSTANA------ 71
          MAKPLKVDE+WL RIA LL++MEFGSL IVVHEGQIVQMERTERKRFEN+ + A      
Sbjct: 1  MAKPLKVDEMWLERIASLLNDMEFGSLQIVVHEGQIVQMERTERKRFENTASGAVKTSGS 60

Query: 72 -RYSGEAGSRRTDSR 85
           R SG+   RRT++R
Sbjct: 61 SRASGQ--QRRTNTR 73


>B1DIY9.1 B1DIY9_9BACL Putative uncharacterized protein
          Length = 72

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 43/51 (84%)

Query: 18 MAKPLKVDEVWLARIAELLDNMEFGSLHIVVHEGQIVQMERTERKRFENST 68
          MAKPL+VD++WL RI E ++ +++GS++I VH+G+IVQ++RTER R++  +
Sbjct: 1  MAKPLEVDQLWLDRILEQVNGLQYGSVNITVHDGRIVQIDRTERTRYDQPS 51


>C0ZJM5.1 C0ZJM5_BREBN Putative uncharacterized protein
          Length = 64

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 18 MAK-PLKVDEVWLARIAELLDNMEFGSLHIVVHEGQIVQMERTERKRFENSTANARYS 74
          MAK  + +D++ L +IA  LD +E+GS+HIVVH+ Q+VQ+ERTE+ R       A+ S
Sbjct: 1  MAKNEVSLDDLLLEKIARALDGLEYGSIHIVVHDSQVVQIERTEKYRLPVEKPEAKIS 58


>Q5WKG9.1 Q5WKG9_BACSK Putative uncharacterized protein
          Length = 53

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 29/35 (82%)

Query: 32 IAELLDNMEFGSLHIVVHEGQIVQMERTERKRFEN 66
          I + ++ ++FGSLHI +H GQI Q+ERTE+KRFEN
Sbjct: 12 IVQFIEEIDFGSLHITIHNGQITQIERTEKKRFEN 46


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 540,846,332
Number of extensions: 17955416
Number of successful extensions: 39372
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 39372
Number of HSP's successfully gapped: 4
Length of query: 90
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 30
Effective length of database: 2,495,435,303
Effective search space: 74863059090
Effective search space used: 74863059090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)