BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0147.0007.p (223 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZHP7.1 C0ZHP7_BREBN Two-component response regulator 273 9e-72 A6TNE3.1 A6TNE3_ALKMQ Two component transcriptional regulator, w... 265 2e-69 Q5L1I7.1 Q5L1I7_GEOKA Two-component response regulator 262 1e-68 B3KBY2.1 B3KBY2_9BACI Response regulator receiver 261 3e-68 C3J2W9.1 C3J2W9_9BACI Two component transcriptional regulator, w... 261 4e-68 >C0ZHP7.1 C0ZHP7_BREBN Two-component response regulator Length = 224 Score = 273 bits (697), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 131/220 (59%), Positives = 164/220 (74%), Gaps = 2/220 (0%) Query: 1 MVVDDDVFVRQLAGLLLRDEGMDVVEKTDGLEAWDYYLHHSVDLIILDIMMPGMDGWELC 60 MVVDDD +R+L + LR+EG +VE DG EA D + L+ILDIMMP MDGWELC Sbjct: 5 MVVDDDPHIRELVSVFLRNEGFTIVEAVDGQEALDKLESVAAQLVILDIMMPNMDGWELC 64 Query: 61 RKLREAGDKPMLMVTAKKESLDKVKGFRLGTDDYLTKPFDPMEMVMRVKALLKRYRIATS 120 RKLRE D P+LM+TAK E+ K+KGF LGTDDYL KPFDP E+V+RVKALLKRYRIA S Sbjct: 65 RKLREHYDFPLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALLKRYRIAAS 124 Query: 121 HIVKLGRVILDKTSYQVHFSDTGGEWTLPLKEFELLYKLASYPGQIFTRDMLIRDIWGYA 180 H V+ G++ILD+ ++ V + WT+PLKEFE+L+KLASYPGQ +R+ LI IWGY Sbjct: 125 HQVQAGKLILDRKTFAV--ASGTKTWTIPLKEFEMLFKLASYPGQTISREQLIEQIWGYD 182 Query: 181 FNGDERTVDTHVKRLRDKFEQYAEDFRIVTMRGMGYRLEV 220 F G+ERTVD H+ RLR++F + F I T+RG+GYRLE+ Sbjct: 183 FEGNERTVDVHINRLRERFPEAMYGFLIRTVRGLGYRLEI 222 >A6TNE3.1 A6TNE3_ALKMQ Two component transcriptional regulator, winged helix family Length = 224 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 127/221 (57%), Positives = 170/221 (76%), Gaps = 4/221 (1%) Query: 1 MVVDDDVFVRQLAGLLLRDEGMDVVEKTDGLEAWDYYLHHSVDLIILDIMMPGMDGWELC 60 ++VDDD +R+L +LLR+EG DV E DG+EA VD++ILD+MMP MDGW+LC Sbjct: 5 LIVDDDPHIRELVKVLLRNEGFDVHEAFDGVEALSKLETIKVDMVILDVMMPNMDGWQLC 64 Query: 61 RKLREAGDKPMLMVTAKKESLDKVKGFRLGTDDYLTKPFDPMEMVMRVKALLKRYRIATS 120 R+LRE D P+LM+TAK E+ KVKGF+LGTDDYL KPF+PME+V+RVKALLKRY+I TS Sbjct: 65 RELREHYDLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALLKRYQIITS 124 Query: 121 HIVKLGRVILDKTSYQVHFSDTGGE-WTLPLKEFELLYKLASYPGQIFTRDMLIRDIWGY 179 V++G +++++ +Y+V G E +TLPLKEFELL+K+ASYP + F+R+ LI DIWGY Sbjct: 125 QTVRIGELVMNQKNYKV---TVGSESFTLPLKEFELLFKMASYPEKTFSREQLIEDIWGY 181 Query: 180 AFNGDERTVDTHVKRLRDKFEQYAEDFRIVTMRGMGYRLEV 220 F G+ERT+D H+ RLR +F + F+I T+RG+GYRLEV Sbjct: 182 DFAGNERTLDVHINRLRQRFPEENHSFKIRTIRGLGYRLEV 222 >Q5L1I7.1 Q5L1I7_GEOKA Two-component response regulator Length = 224 Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 130/220 (59%), Positives = 161/220 (73%), Gaps = 2/220 (0%) Query: 1 MVVDDDVFVRQLAGLLLRDEGMDVVEKTDGLEAWDYYLHHSVDLIILDIMMPGMDGWELC 60 ++VDDD +R+L L EG + E +G EA D VDL+I+DIMMP MDGWELC Sbjct: 5 LIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWELC 64 Query: 61 RKLREAGDKPMLMVTAKKESLDKVKGFRLGTDDYLTKPFDPMEMVMRVKALLKRYRIATS 120 R+LR+ D P+LM+TAK E+ KVKGF LG DDYL KPFDP+E+V RVKALLKRYRIATS Sbjct: 65 RELRDYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRIATS 124 Query: 121 HIVKLGRVILDKTSYQVHFSDTGGEWTLPLKEFELLYKLASYPGQIFTRDMLIRDIWGYA 180 IV++GR+ L++ +Y+ D E LP KEFELL+KLASYPG+ FTRD LI IWGY Sbjct: 125 QIVQIGRLSLNRKTYECRLGDQ--EIFLPPKEFELLFKLASYPGKTFTRDELIEQIWGYD 182 Query: 181 FNGDERTVDTHVKRLRDKFEQYAEDFRIVTMRGMGYRLEV 220 ++GDERTVD H+KRLR++F Q F I T+RG+GYRLE Sbjct: 183 YDGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLEA 222 >B3KBY2.1 B3KBY2_9BACI Response regulator receiver Length = 224 Score = 261 bits (667), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 131/224 (58%), Positives = 166/224 (74%), Gaps = 6/224 (2%) Query: 1 MVVDDDVFVRQLAGLLLRDEGMDVVEKTDGLEAWDYYLHHSVDLIILDIMMPGMDGWELC 60 +V DDD +R+L L LR++G VE DG EA Y VDL++LDIMMP MDGW LC Sbjct: 5 LVADDDANIRELVCLFLRNDGFTTVEAADGKEALSVYGSTPVDLVVLDIMMPMMDGWTLC 64 Query: 61 RKLREAG-DKPMLMVTAKKESLDKVKGFRLGTDDYLTKPFDPMEMVMRVKALLKRYRIAT 119 ++LR A D P+LM+TA+ E+ +KVKGF LGTDDYLTKPFDP+E+ +RVKALLKRYRI + Sbjct: 65 KELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIGS 124 Query: 120 SHIVKLGRVILDKTSYQVHFSDTGGE-WTLPLKEFELLYKLASYPGQIFTRDMLIRDIWG 178 + ++ G VILD+ +Y+V +G E TLPLKEFELLYKLA PGQ++TR+ LI IWG Sbjct: 125 TQTIQFGNVILDRQTYKVS---SGPETLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWG 181 Query: 179 YAFNGDERTVDTHVKRLRDKFEQYAEDFRIVTMRGMGYRLEVYH 222 + GD+RTVD H+KRLR++F DFRI T+RG+GYRLEVY Sbjct: 182 IDYAGDDRTVDVHIKRLRERFAT-TPDFRIETVRGLGYRLEVYE 224 >C3J2W9.1 C3J2W9_9BACI Two component transcriptional regulator, winged helix family Length = 224 Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 130/222 (58%), Positives = 159/222 (71%), Gaps = 2/222 (0%) Query: 1 MVVDDDVFVRQLAGLLLRDEGMDVVEKTDGLEAWDYYLHHSVDLIILDIMMPGMDGWELC 60 +VVDDD +R+L L EG + E +G EA D VDL+I+DIMMP MDGWELC Sbjct: 5 LVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWELC 64 Query: 61 RKLREAGDKPMLMVTAKKESLDKVKGFRLGTDDYLTKPFDPMEMVMRVKALLKRYRIATS 120 R+LR+ D P+LM+TAK E+ KVKGF LG DDYL KPFDP+E+V RVKALLKRYRI TS Sbjct: 65 RELRDYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRITTS 124 Query: 121 HIVKLGRVILDKTSYQVHFSDTGGEWTLPLKEFELLYKLASYPGQIFTRDMLIRDIWGYA 180 IV++G + L++ +Y+ D E TLP KEFELL+KLASYPG+ FTRD LI IWGY Sbjct: 125 QIVQIGHLSLNRKTYECRLGDQ--EITLPPKEFELLFKLASYPGKTFTRDELIEQIWGYD 182 Query: 181 FNGDERTVDTHVKRLRDKFEQYAEDFRIVTMRGMGYRLEVYH 222 + GDERTVD H+KRLR++F Q F I T+RG+GYRLE Sbjct: 183 YEGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLEACQ 224 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.142 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,399,985,405 Number of extensions: 58551098 Number of successful extensions: 266555 Number of sequences better than 1.0e-05: 27054 Number of HSP's gapped: 243254 Number of HSP's successfully gapped: 27190 Length of query: 223 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 92 Effective length of database: 1,826,543,238 Effective search space: 168041977896 Effective search space used: 168041977896 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 128 (53.9 bits)