BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0147.0003.p
         (96 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C3CV42.1 C3CV42_BACTU Putative uncharacterized protein                 84   3e-15
A8F9S8.1 A8F9S8_BACP2 Hypothetical membrane protein                    77   5e-13
B4AIZ2.1 B4AIZ2_BACPU Hypothetical membrane protein                    77   6e-13
Q8EMB7.1 Q8EMB7_OCEIH Hypothetical conserved protein                   69   1e-10
Q5WCL4.1 Q5WCL4_BACSK Putative uncharacterized protein                 60   7e-08

>C3CV42.1 C3CV42_BACTU Putative uncharacterized protein
          Length = 101

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 54/91 (59%)

Query: 2   FKWGTFVYEAFLALPFIGGAFVVANAWAPXXXXXXXXXXXXXXXXRERGPIAGNVVGIIT 61
            KW TF  EAF A+P +GG F+++  W P                +E   I GNVVGII 
Sbjct: 10  LKWVTFGVEAFFAIPIVGGTFILSFLWIPLFIALLLHIATIVMCKKEECSIGGNVVGIIA 69

Query: 62  SVVALIPFVGWIMHAVTAIILLIEGISASRR 92
           SV+  IPF+GW++H VTAI+LL+EGI  S+ 
Sbjct: 70  SVLGAIPFLGWLLHLVTAIVLLLEGIKMSKS 100


>A8F9S8.1 A8F9S8_BACP2 Hypothetical membrane protein
          Length = 104

 Score = 77.0 bits (188), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 59/95 (62%)

Query: 1   LFKWGTFVYEAFLALPFIGGAFVVANAWAPXXXXXXXXXXXXXXXXRERGPIAGNVVGII 60
           + KW T ++EA LA+P IGG FV++N ++P                R++GP+ G+++GI+
Sbjct: 6   IMKWITGIFEACLAIPVIGGLFVISNGYSPLMVMLILHIITLVLSKRDQGPMIGSIIGIV 65

Query: 61  TSVVALIPFVGWIMHAVTAIILLIEGISASRRTPR 95
           TS +A IP +G+I+H +TA+ L+I  +    +T +
Sbjct: 66  TSCLAWIPILGFILHIITALALIITALVPDEKTRQ 100


>B4AIZ2.1 B4AIZ2_BACPU Hypothetical membrane protein
          Length = 104

 Score = 76.6 bits (187), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 58/95 (61%)

Query: 1   LFKWGTFVYEAFLALPFIGGAFVVANAWAPXXXXXXXXXXXXXXXXRERGPIAGNVVGII 60
           + KW T ++EA LA+P IGG FV++N + P                R++GP+ G+++GI+
Sbjct: 6   IMKWITGIFEACLAIPVIGGLFVISNGYTPLMVMLILHIITLVLSKRDQGPMIGSIIGIV 65

Query: 61  TSVVALIPFVGWIMHAVTAIILLIEGISASRRTPR 95
           TS +A IP +G+I+H +TA+ L+I  +    +T +
Sbjct: 66  TSCLAWIPILGFILHIITALALIITALVPDEKTRQ 100


>Q8EMB7.1 Q8EMB7_OCEIH Hypothetical conserved protein
          Length = 105

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 56/95 (58%)

Query: 1   LFKWGTFVYEAFLALPFIGGAFVVANAWAPXXXXXXXXXXXXXXXXRERGPIAGNVVGII 60
           + +W T   EA L +PFIGG ++ +NA+ P                R+   IAG+V+GII
Sbjct: 6   IMQWVTGGAEALLGIPFIGGIYIFSNAYTPLFVMLLLHILTLILAKRDGRWIAGSVIGII 65

Query: 61  TSVVALIPFVGWIMHAVTAIILLIEGISASRRTPR 95
           TSV+A IP VG IMH ++A+ L+I G+ ++++   
Sbjct: 66  TSVIAWIPIVGMIMHWISALALIISGMQSNKKDDE 100


>Q5WCL4.1 Q5WCL4_BACSK Putative uncharacterized protein
          Length = 94

 Score = 59.7 bits (143), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 44/78 (56%)

Query: 8  VYEAFLALPFIGGAFVVANAWAPXXXXXXXXXXXXXXXXRERGPIAGNVVGIITSVVALI 67
          V+E  LA+PF GG F++ + ++P                      AG++ GI TSV+  I
Sbjct: 12 VFEGLLAIPFFGGLFILLSGYSPLWFMLVFHIVGLLLAVASNRGKAGHIFGIATSVIGWI 71

Query: 68 PFVGWIMHAVTAIILLIE 85
          PF+GW+ H +TAIILLIE
Sbjct: 72 PFLGWLFHVITAIILLIE 89


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.145    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 457,554,197
Number of extensions: 11334260
Number of successful extensions: 45716
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 45707
Number of HSP's successfully gapped: 11
Length of query: 96
Length of database: 3,060,696,203
Length adjustment: 65
Effective length of query: 31
Effective length of database: 2,448,330,228
Effective search space: 75898237068
Effective search space used: 75898237068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)