BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0139.0008.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D6V1.1 B1D6V1_9BACL Putative uncharacterized protein                 77   4e-13

>B1D6V1.1 B1D6V1_9BACL Putative uncharacterized protein
          Length = 129

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 71/122 (58%), Gaps = 2/122 (1%)

Query: 3   IISATKDLEGQSGLVSVKGEDIIFLGTDSSSSIILLHTLDSVFYTTGTLKYWTRVLNASG 62
           +++ T D+ G +GL+  K  D+ +L  +     ++ H  +  ++  G   YW  ++  SG
Sbjct: 1   MVTLTGDIAGTTGLIPTKISDVDYLEYNRKLKRVIFHIGNKTYFAAGDFLYWVDLIRNSG 60

Query: 63  YT-FYLADRNNSINIHNIVEINSLLKVAYFERE-RTKDSKYCTMSKSGIKKVCQLVGELN 120
           YT F + DRNN++N++NI  ++ + K AYFE + + K +  C+MS    KKV +L+G  +
Sbjct: 61  YTNFMIVDRNNAVNLNNIKVLDPVFKKAYFEYDIKDKVNGGCSMSWDKYKKVIELIGVHS 120

Query: 121 PS 122
           P+
Sbjct: 121 PN 122


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 689,485,832
Number of extensions: 24437567
Number of successful extensions: 62796
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 62794
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)