BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0139.0006.p
         (176 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGG2.1 B3KGG2_9BACI Accessory gene regulator B                      132   1e-29
B1D6V3.1 B1D6V3_9BACL Accessory gene regulator B                      107   6e-22

>B3KGG2.1 B3KGG2_9BACI Accessory gene regulator B
          Length = 180

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 102/172 (59%), Gaps = 1/172 (0%)

Query: 1   LIDILSTRLATGIKNIVPDHPASHAVLKFAXXXXXXXXXXXXXXXXXXXFTGRLTEAGLI 60
           +I+ LS R+A  IK  VPDHP+S  VLK A                   F+G + EA + 
Sbjct: 2   IIEGLSERIAERIKRQVPDHPSSVPVLKHALAILFNVMFIVVFTLLISIFSGNVREAVIA 61

Query: 61  LISFALLRQVSGGVHLKSGTKCVIFTTALFTLLSFVELGNVYVQILNAVSLVLVLWLAPI 120
           L  FA+LRQ SGG HLK+G  C+ FTTALFTL++FV++G   V ++NA+SL+LV+  AP 
Sbjct: 62  LTGFAILRQFSGGYHLKTGAGCIAFTTALFTLVTFVDMGIAAVLVMNALSLLLVMLFAPS 121

Query: 121 GIERQTRIPKRHWPKLKIAAGVLIIFNMLFXXXXXXXXXXXXXXTLFLAWRG 172
            IERQ+RIP +H+ KL++ +  +++FN +               +L L W+G
Sbjct: 122 RIERQSRIPSKHYSKLRLFSCFIVMFNFVLQSPTLAVIFLIQAISL-LRWKG 172


>B1D6V3.1 B1D6V3_9BACL Accessory gene regulator B
          Length = 170

 Score =  107 bits (266), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 86/149 (57%)

Query: 1   LIDILSTRLATGIKNIVPDHPASHAVLKFAXXXXXXXXXXXXXXXXXXXFTGRLTEAGLI 60
           ++  L+ ++A GIK+  P+HPAS  VL+++                   FTGR  E  +I
Sbjct: 2   IVKALANKMAVGIKSAAPEHPASVEVLRYSLMMILNPVFAVSGALLISLFTGRTAEVAII 61

Query: 61  LISFALLRQVSGGVHLKSGTKCVIFTTALFTLLSFVELGNVYVQILNAVSLVLVLWLAPI 120
           L+ FALLR VSGGVHLKS   C++ +    T+LS++ L N +  ILN  S +LVL  AP 
Sbjct: 62  LVCFALLRHVSGGVHLKSTEACILVSAGGATILSYITLDNQWTLILNIASCLLVLLFAPS 121

Query: 121 GIERQTRIPKRHWPKLKIAAGVLIIFNML 149
            +E+ T + K+ + KL++ A +++  N L
Sbjct: 122 RLEKSTWVQKQSYSKLRLIALLIVASNFL 150


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.143    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 745,058,287
Number of extensions: 21514685
Number of successful extensions: 62092
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 62098
Number of HSP's successfully gapped: 3
Length of query: 176
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 50
Effective length of database: 1,873,648,313
Effective search space: 93682415650
Effective search space used: 93682415650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)