BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0139.0005.p (202 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGG1.1 B3KGG1_9BACI Putative uncharacterized protein 182 1e-44 A9U8D0.1 A9U8D0_PHYPA Predicted protein (Fragment) 166 2e-39 B1D6V4.1 B1D6V4_9BACL Putative uncharacterized protein 137 5e-31 Q3F0V0.1 Q3F0V0_BACTI Putative uncharacterized protein 70 1e-10 C3IV43.1 C3IV43_BACTU Putative uncharacterized protein 70 1e-10 >B3KGG1.1 B3KGG1_9BACI Putative uncharacterized protein Length = 225 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/202 (46%), Positives = 125/202 (61%) Query: 1 MAFSTIETISVYCLIMSLFRFKFMNYIWKALFMVLLINLQSYIMRNEFSLSYLVPLITIL 60 M FST ET+++Y LIM+L RFK YIW+AL +++L NLQSYIMRNE SL +L PLIT++ Sbjct: 7 MVFSTFETLAIYSLIMTLLRFKTTEYIWQALLVMILANLQSYIMRNELSLDFLAPLITVM 66 Query: 61 LFAIFFKVVVKIPLIWSVIVTVLGYVAYAFLQTGLAKLLFGSIAVAQGDTSNGYLLQFAS 120 +F F ++KIP+IWS I T++GY+ YA +QT +FGSI Q D + GY+LQ S Sbjct: 67 IFVFLFSAIIKIPVIWSAICTIIGYMFYALIQTAYLTTVFGSINAIQTDPAKGYILQVLS 126 Query: 121 GLITILLSVWLYKTGWGFKFDFERLRFKFEDXXXXXXXXXXXXXXXXXXYYNDLFVNILF 180 G +L+S +Y+ G GFK+D E+LR KFE Y N L++++LF Sbjct: 127 GATGLLISWLMYRFGIGFKYDLEKLRIKFEHILLIALIIVVLILIAILFYLNRLWLHLLF 186 Query: 181 FASVMMFLLYYAIRKEAEEDID 202 F LYYAI E E D Sbjct: 187 FGITFGIFLYYAINTEERESYD 208 >A9U8D0.1 A9U8D0_PHYPA Predicted protein (Fragment) Length = 319 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 84/150 (56%), Positives = 107/150 (71%) Query: 1 MAFSTIETISVYCLIMSLFRFKFMNYIWKALFMVLLINLQSYIMRNEFSLSYLVPLITIL 60 M FST+ET S+Y IMS+FR+K +YIW+AL ++LL N+QS+I+RNE S+ YL PLITIL Sbjct: 1 MFFSTVETFSMYVFIMSVFRYKMTDYIWQALIVILLANVQSFILRNELSVPYLAPLITIL 60 Query: 61 LFAIFFKVVVKIPLIWSVIVTVLGYVAYAFLQTGLAKLLFGSIAVAQGDTSNGYLLQFAS 120 +F F VVKIP+IWS I+T++GYV YA +QT LFGS+ AQ NGY+LQ S Sbjct: 61 IFIFLFTTVVKIPVIWSAIMTIIGYVFYALVQTVYVSFLFGSVREAQSTDWNGYMLQLIS 120 Query: 121 GLITILLSVWLYKTGWGFKFDFERLRFKFE 150 + L+S LYK G GF FD E+LR KFE Sbjct: 121 AVTVYLISWVLYKFGLGFSFDMEKLRLKFE 150 >B1D6V4.1 B1D6V4_9BACL Putative uncharacterized protein Length = 211 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 77/202 (38%), Positives = 119/202 (58%), Gaps = 2/202 (0%) Query: 1 MAFSTIETISVYCLIMSLFRFKFMNYIWKALFMVLLINLQSYIMRNEFSLSYLVPLITIL 60 M FSTIE ++VY ++ +FRFK +YI L +++L+NLQS+ MR + ++VP+I +L Sbjct: 8 MLFSTIEGLAVYAFMLYIFRFKLTDYILPVLILIVLMNLQSFYMREDTHFPFVVPVINLL 67 Query: 61 LFAIFFKVVVKIPLIWSVIVTVLGYVAYAFLQTGLAKLLFGSIAVAQGDTS--NGYLLQF 118 +F K +V++PL+ SV+ +GYVA+ +Q +A G ++V Q T GY++Q Sbjct: 68 FSVLFMKYIVRMPLLGSVVSAGIGYVAFGLVQLLIAYSSGGYLSVEQVQTVAYKGYIIQL 127 Query: 119 ASGLITILLSVWLYKTGWGFKFDFERLRFKFEDXXXXXXXXXXXXXXXXXXYYNDLFVNI 178 +G+I +L++ LYK G GF DFE+ RFK+E Y +L++ + Sbjct: 128 LTGVIGVLIAHTLYKFGIGFANDFEKYRFKWESKLVFITCILFCLAMGVVVYIGNLYILL 187 Query: 179 LFFASVMMFLLYYAIRKEAEED 200 FF MM LYYA+RKE EE Sbjct: 188 TFFIISMMIFLYYAMRKEQEES 209 >Q3F0V0.1 Q3F0V0_BACTI Putative uncharacterized protein Length = 240 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 13/209 (6%) Query: 4 STIETISVYCLIMSLFRFKFMNYIW---KALFMVLLINLQSYIMRNEFSLSYLVPLITIL 60 TI I Y ++ ++FR +F +I F+ +IN Y + L YLVP+I ++ Sbjct: 16 QTILGIGNYAIMCAIFRLRFHRHITIISVISFLTSVINYSIYFNKQHDGLGYLVPIIGMV 75 Query: 61 LFAIFFKVVVKIPLIWSVIVTVLGYVAYAFLQTGL---AKLLFGSIAVAQGDTSNGYLLQ 117 + ++ V K+P+IWS++VTV G V + F S + Y + Sbjct: 76 ISFLYLAAVEKVPVIWSLVVTVAGGVIIPLIIQIAIIYCSFGFFSPLELKAHIWRNYAMD 135 Query: 118 FASGLITILLSVWLYKTGWGFKFDFERLRFKFEDXXXXXXXXXXXXXXXXXXYYN----- 172 SG I +++ LY W F F+FER+RFK E + + Sbjct: 136 ITSGFIYGVMAFILYSQDWTFNFNFERIRFKREKHFVIAISLFGAVYLPASFFMSHVRGI 195 Query: 173 DLFVNILFFASVMMF--LLYYAIRKEAEE 199 DL + L +S ++F LL +AI+KE E Sbjct: 196 DLNLTFLAISSSILFIILLVFAIKKEKTE 224 >C3IV43.1 C3IV43_BACTU Putative uncharacterized protein Length = 240 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 13/209 (6%) Query: 4 STIETISVYCLIMSLFRFKFMNYIW---KALFMVLLINLQSYIMRNEFSLSYLVPLITIL 60 TI I Y ++ ++FR +F +I F+ +IN Y + L YLVP+I ++ Sbjct: 16 QTILGIGNYAIMCAIFRLRFHRHITIISVISFLTSVINYSIYFNKQHDGLGYLVPIIGMV 75 Query: 61 LFAIFFKVVVKIPLIWSVIVTVLGYVAYAFLQTGL---AKLLFGSIAVAQGDTSNGYLLQ 117 + ++ V K+P+IWS++VTV G V + F S + Y + Sbjct: 76 ISFLYLAAVEKVPVIWSLVVTVAGGVIIPLIIQIAIIYCSFGFFSPLELKAHIWRNYAMD 135 Query: 118 FASGLITILLSVWLYKTGWGFKFDFERLRFKFEDXXXXXXXXXXXXXXXXXXYYN----- 172 SG I +++ LY W F F+FER+RFK E + + Sbjct: 136 ITSGFIYGVMAFILYSQDWTFNFNFERIRFKREKHFVIAISLFGAVYLPASFFMSHVRGI 195 Query: 173 DLFVNILFFASVMMF--LLYYAIRKEAEE 199 DL + L +S ++F LL +AI+KE E Sbjct: 196 DLNLTFLAISSSILFIILLVFAIKKEKTE 224 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.335 0.147 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 982,928,838 Number of extensions: 34697689 Number of successful extensions: 205481 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 205475 Number of HSP's successfully gapped: 7 Length of query: 202 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 73 Effective length of database: 1,845,385,268 Effective search space: 134713124564 Effective search space used: 134713124564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 128 (53.9 bits)