BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0017.p (179 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK41.1 B3KK41_9BACI Putative uncharacterized protein 245 2e-63 B1DM84.1 B1DM84_9BACL Putative uncharacterized protein 166 6e-40 C0ZC01.1 C0ZC01_BREBN Putative uncharacterized protein 99 2e-19 B1I3L8.1 B1I3L8_DESAP Putative uncharacterized protein 82 2e-14 C0GE34.1 C0GE34_9FIRM Putative uncharacterized protein 82 2e-14 >B3KK41.1 B3KK41_9BACI Putative uncharacterized protein Length = 175 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/175 (67%), Positives = 146/175 (83%) Query: 5 LDRLLLFLYSLCIGILSVIAILLLSGAIPDSYEALDRPEXXXXXXXXXXXLFLLSIRFFY 64 +DRLLLF+YSL IG++SV+AILLLSGA+P + LFLLSIRFFY Sbjct: 1 MDRLLLFIYSLSIGVISVVAILLLSGAVPYELTNVQEQRLFWAGIIVAAVLFLLSIRFFY 60 Query: 65 ISLRRDRASLPSVDQRTEYGDIQISMETIENLSLKAAGKVKGIRDLKSRIRVSQAGLEIM 124 IS+RRDR++L S+DQRTE+GDIQIS+ETIENL LKAA +V+G++DLKSRI+VSQ+GL+I Sbjct: 61 ISVRRDRSNLNSIDQRTEFGDIQISVETIENLCLKAASRVRGVKDLKSRIKVSQSGLDIA 120 Query: 125 IRAVVDGEHSLPLLTTEVQRQVHEFVQETTGIPVADVSVYIANLTQSPSFKSRVE 179 IRAVVDGE S+P LTTEVQ+QVH+FV++TTGIPV+ VSVYIAN+ Q+PSFKSRVE Sbjct: 121 IRAVVDGEESIPTLTTEVQKQVHDFVEDTTGIPVSSVSVYIANVVQAPSFKSRVE 175 >B1DM84.1 B1DM84_9BACL Putative uncharacterized protein Length = 185 Score = 166 bits (421), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 91/183 (49%), Positives = 127/183 (69%), Gaps = 6/183 (3%) Query: 3 KILDRLLLFLYSLCIGILSV-IAILLLSGAIPDSY-----EALDRPEXXXXXXXXXXXLF 56 +I+D+L LF+YS+ IG++SV IA + D E L Sbjct: 3 RIIDKLFLFIYSIVIGVISVFIACIGFEWIREDDLNDMVSELYGTNSFLITTIVVGLVLL 62 Query: 57 LLSIRFFYISLRRDRASLPSVDQRTEYGDIQISMETIENLSLKAAGKVKGIRDLKSRIRV 116 +LS+RFF +SL+R +S PS+DQRT++GDI+IS+ETIENL+LKAAGK +G++DLK+RI+ Sbjct: 63 VLSLRFFIVSLKRSSSSAPSIDQRTDFGDIRISIETIENLALKAAGKQRGVKDLKARIQA 122 Query: 117 SQAGLEIMIRAVVDGEHSLPLLTTEVQRQVHEFVQETTGIPVADVSVYIANLTQSPSFKS 176 S +GL I++RAVVDGE+S+P LT E+Q+ V + V+E GIPV +V+VYIAN+ QS KS Sbjct: 123 SDSGLNIILRAVVDGENSIPSLTEEIQKAVKDHVEEIAGIPVTNVAVYIANVIQSAPNKS 182 Query: 177 RVE 179 RVE Sbjct: 183 RVE 185 >C0ZC01.1 C0ZC01_BREBN Putative uncharacterized protein Length = 207 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 104/183 (56%), Gaps = 11/183 (6%) Query: 3 KILDRLLLFLYSLCIGILSVIAILLLSGAIPDSYEALDRP------EXXXXXXXXXXXLF 56 + DR +L +YS + +LS IAI SG I + RP +F Sbjct: 24 NLFDRFILTIYSFALIVLSCIAIAATSGLISQDF---FRPYVDQMLAGTNITYLIVAIIF 80 Query: 57 LL-SIRFFYISLRRDRASLP-SVDQRTEYGDIQISMETIENLSLKAAGKVKGIRDLKSRI 114 L+ S+RFF+ S R ++ + + QR++ G++ I+++TI+ ++ +AA +VKG+RDLK+ + Sbjct: 81 LVVSLRFFFSSFRSNKPKVERGIRQRSDLGEVNITIQTIQTIAERAARRVKGVRDLKTTV 140 Query: 115 RVSQAGLEIMIRAVVDGEHSLPLLTTEVQRQVHEFVQETTGIPVADVSVYIANLTQSPSF 174 + ++G I +R VDGE LP LT ++Q V E V+ G+ +++V++ + + Q ++ Sbjct: 141 KALESGNIITLRVSVDGETPLPELTQKLQADVKEQVEGIAGVVISEVTIVVTEVAQQENY 200 Query: 175 KSR 177 SR Sbjct: 201 SSR 203 >B1I3L8.1 B1I3L8_DESAP Putative uncharacterized protein Length = 175 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 5/176 (2%) Query: 5 LDRLLLFLYSLCIGILSVIAILLLSGAI-PDSYEALDRPEXXXXXXXXXXXLFLLSIRFF 63 DR LL +Y+L + VI IL+ +G + P E L RPE L +R Sbjct: 4 FDRGLLAIYALAVSASIVIGILIFTGVVAPTQLEVLLRPEHNALATGVLGVFLLAGLRLL 63 Query: 64 YISLRRDRASLPSVDQRTEYGDIQISMETIENLSLKAAGKVKGIRDLKSRIRVSQAGLEI 123 +SLRR + S VD+ + G +++S+ +ENL K V GIR+++ ++ G+ I Sbjct: 64 GVSLRRKKESQAIVDE-SALGQVRVSLTALENLIEKVVSPVPGIREVRPKVGPEDGGIGI 122 Query: 124 MIRAVVDGEHSLPLLTTEVQRQVHEFVQETTGIPVADVSVYIANLTQSPSFKSRVE 179 ++ + + ++P ++ +Q+ V + ++E TG+ V V + I N S K RVE Sbjct: 123 RLKVIASPDINVPEMSRVIQQLVQDQIREVTGLTVNRVRIEIENFAIS---KGRVE 175 >C0GE34.1 C0GE34_9FIRM Putative uncharacterized protein Length = 177 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 74/113 (65%), Gaps = 1/113 (0%) Query: 56 FLLSIRFFYISLRRDRASLPSVDQRTEYGDIQISMETIENLSLKAAGKVKGIRDLKSRIR 115 +L++ +S+RR + ++ Q+ G+++I + +ENL LKAA ++KG+R+ K+R+ Sbjct: 57 LILAVAILVMSMRRGEC-VETILQQGPLGEVRICFKALENLVLKAAREIKGVRETKTRLV 115 Query: 116 VSQAGLEIMIRAVVDGEHSLPLLTTEVQRQVHEFVQETTGIPVADVSVYIANL 168 ++ GL + +RAV + ++P +T E+Q V E+V+ETTG VA++ V I N+ Sbjct: 116 YNENGLIVFLRAVTYPDQNIPQVTAELQAAVKEYVEETTGTNVAEIRVMIENV 168 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 815,309,893 Number of extensions: 25840884 Number of successful extensions: 76152 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 76148 Number of HSP's successfully gapped: 23 Length of query: 179 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 52 Effective length of database: 1,864,227,298 Effective search space: 96939819496 Effective search space used: 96939819496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)