BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0013.p
         (169 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK38.1 B3KK38_9BACI Acetyl-CoA carboxylase, biotin carboxyl ca...   158   2e-37
B1DM87.1 B1DM87_9BACL Acetyl-CoA carboxylase, biotin carboxyl ca...   153   6e-36
C2WBX3.1 C2WBX3_BACCE Biotin carboxyl carrier protein of acetyl-...   133   6e-30
C3BPS8.1 C3BPS8_9BACI Acetyl-CoA carboxylase                          133   6e-30
C3B806.1 C3B806_BACMY Acetyl-CoA carboxylase                          133   6e-30

>B3KK38.1 B3KK38_9BACI Acetyl-CoA carboxylase, biotin carboxyl carrier
           protein
          Length = 167

 Score =  158 bits (399), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/172 (53%), Positives = 110/172 (63%), Gaps = 8/172 (4%)

Query: 1   MFXXXXXXXXXXXXDQTSSVHELEIESEGMKLAIRKPDRAEADGMAIXXXXXXXXXXXXX 60
           MF            DQTS VHELEIESEG +L+I+KP+ AE     +             
Sbjct: 1   MFKLNEIKELIKLVDQTS-VHELEIESEGTRLSIKKPNAAEV----VNNYQAAPQAYIPA 55

Query: 61  XXXXXXXXXXXXXXXEIPAA-PQQPASPEG--ALHKIVSPMVGTFYSAASPETPSFVNVG 117
                          + PAA PQQ ++ +   +LHKIVSPMVGTFY + SPE   FV+ G
Sbjct: 56  QQVMAPQIVQPNTGNQAPAAAPQQDSAEDSNSSLHKIVSPMVGTFYRSPSPEAGPFVSPG 115

Query: 118 DRVSEKSTVCIIEAMKLMNELEAEVRGEIVSVLAENGQLVEYGQPLFLVKPE 169
           D+V+EKSTVCIIEAMKLMNELEAE++GEIV VLA+NGQLVE+GQPLFLVKPE
Sbjct: 116 DKVTEKSTVCIIEAMKLMNELEAEIKGEIVEVLAQNGQLVEFGQPLFLVKPE 167


>B1DM87.1 B1DM87_9BACL Acetyl-CoA carboxylase, biotin carboxyl carrier
           protein
          Length = 165

 Score =  153 bits (386), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/174 (51%), Positives = 102/174 (58%), Gaps = 14/174 (8%)

Query: 1   MFXXXXXXXXXXXXDQTSSVHELEIESEGMKLAIRKPDRAEADGMAIXXXXXXXXXXXXX 60
           MF            DQTS VHELEIE+EG +L IRKP + E   +               
Sbjct: 1   MFKLSEIKELIKLVDQTS-VHELEIENEGARLFIRKPGKTEVVNV--------QAAAPIT 51

Query: 61  XXXXXXXXXXXXXXXEIPAAPQQPASPEGA-----LHKIVSPMVGTFYSAASPETPSFVN 115
                          E PAA  Q ++P        LH+IVSPMVGTFYS+ SP+   FV 
Sbjct: 52  HTYTQAPVFAPQPVQEAPAAAVQTSTPAARPNTDNLHQIVSPMVGTFYSSPSPDAAVFVK 111

Query: 116 VGDRVSEKSTVCIIEAMKLMNELEAEVRGEIVSVLAENGQLVEYGQPLFLVKPE 169
            GDRV+EKS VCI+EAMKLMNELEAEVRGEIV +L  NGQLVEYGQPLFLVKPE
Sbjct: 112 EGDRVNEKSVVCILEAMKLMNELEAEVRGEIVEILVSNGQLVEYGQPLFLVKPE 165


>C2WBX3.1 C2WBX3_BACCE Biotin carboxyl carrier protein of acetyl-CoA
           carboxylase
          Length = 169

 Score =  133 bits (335), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 74/92 (80%)

Query: 76  EIPAAPQQPASPEGALHKIVSPMVGTFYSAASPETPSFVNVGDRVSEKSTVCIIEAMKLM 135
           E P   +     +  LHKI+SPMVGTFYS++SP+TP++++VGDRVSE + VCI+EAMKL 
Sbjct: 77  EAPKQEENKGVKDENLHKIISPMVGTFYSSSSPDTPAYISVGDRVSEGTVVCIVEAMKLF 136

Query: 136 NELEAEVRGEIVSVLAENGQLVEYGQPLFLVK 167
           NE+EAEV GEIV +L  NGQLVEYGQPLFLVK
Sbjct: 137 NEIEAEVNGEIVEILVNNGQLVEYGQPLFLVK 168


>C3BPS8.1 C3BPS8_9BACI Acetyl-CoA carboxylase
          Length = 169

 Score =  133 bits (334), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 75/92 (81%)

Query: 76  EIPAAPQQPASPEGALHKIVSPMVGTFYSAASPETPSFVNVGDRVSEKSTVCIIEAMKLM 135
           E+P   ++ A  +  LH I SPMVGTFY+++SP+TP++V+VGDRVSE + VCI+EAMKL 
Sbjct: 77  EVPKQEEKKAVQDENLHTITSPMVGTFYASSSPDTPAYVSVGDRVSEGTVVCIVEAMKLF 136

Query: 136 NELEAEVRGEIVSVLAENGQLVEYGQPLFLVK 167
           NE+EAEV GEIV +L  NGQLVEYGQPLFLVK
Sbjct: 137 NEIEAEVNGEIVEILVNNGQLVEYGQPLFLVK 168


>C3B806.1 C3B806_BACMY Acetyl-CoA carboxylase
          Length = 169

 Score =  133 bits (334), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 75/92 (81%)

Query: 76  EIPAAPQQPASPEGALHKIVSPMVGTFYSAASPETPSFVNVGDRVSEKSTVCIIEAMKLM 135
           E+P   ++ A  +  LH I SPMVGTFY+++SP+TP++V+VGDRVSE + VCI+EAMKL 
Sbjct: 77  EVPKQEEKKAVQDENLHTITSPMVGTFYASSSPDTPAYVSVGDRVSEGTVVCIVEAMKLF 136

Query: 136 NELEAEVRGEIVSVLAENGQLVEYGQPLFLVK 167
           NE+EAEV GEIV +L  NGQLVEYGQPLFLVK
Sbjct: 137 NEIEAEVNGEIVEILVNNGQLVEYGQPLFLVK 168


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 726,100,082
Number of extensions: 22113854
Number of successful extensions: 56033
Number of sequences better than 1.0e-05: 1344
Number of HSP's gapped: 56165
Number of HSP's successfully gapped: 1344
Length of query: 169
Length of database: 3,060,696,203
Length adjustment: 125
Effective length of query: 44
Effective length of database: 1,883,069,328
Effective search space: 82855050432
Effective search space used: 82855050432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)