BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0012.p
         (295 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK37.1 B3KK37_9BACI Putative uncharacterized protein                143   2e-32
B1DM88.1 B1DM88_9BACL Putative uncharacterized protein                 69   4e-10

>B3KK37.1 B3KK37_9BACI Putative uncharacterized protein
          Length = 287

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 147/306 (48%), Gaps = 45/306 (14%)

Query: 1   MLSLMVVLSAYYLFTEDSGASIPKETAGSVQVDNMKSGA-DGAQSPALDSGLVINEVSAQ 59
           MLSLMV+LSAYYLFT+DSG   P   A S QVD  K GA   A   A+D  LV+NEV  +
Sbjct: 13  MLSLMVILSAYYLFTDDSGTKAPP-VAESTQVDGQKPGAGQEANGTAVDE-LVVNEVLEE 70

Query: 60  DIAKDSG-----------KAAVNEDSSSAALTADNDNGKA-GTDDKKAATEDKXXXXXXX 107
               DSG                ED + A     +D GKA G  DK    E K       
Sbjct: 71  GTDGDSGANEQGTGTTDTGVTGTEDPAEATQGEQDDQGKAAGEADKPQEPEVK------- 123

Query: 108 XXXXXXXXXXXXXNAVTAETGSGADQTADASKPGXXXXXXXXXXXXXXXXXXPAKDDAAI 167
                             E+  GAD++ DAS  G                    K D  +
Sbjct: 124 ------------------ESTDGADKSKDASSTGKDEAETSKDTSSTSGE----KSDKEV 161

Query: 168 LDEVASQSVSASSLFTNYLYEREQKNLKDQNDLLALINDMDKTPAENATAXXXXXXXXXX 227
           L+EVA+ + SA +   +Y  +R QKN K  ++L+  I++ +  P E A A          
Sbjct: 162 LEEVAANATSAIAQLDSYKLDRAQKNNKLYDELMTKIDNHENKPEETAQATQQLKAAEAK 221

Query: 228 XXXITGIEEKLQQKYGEAIVKEEAGENYTVVVLSNKLDVKQAVGIVDLVMKELSVTQNKI 287
              I  IEE LQQ++G A+VKEE+ E Y VVVLS KLD K A  IV LVMKEL V+ +K+
Sbjct: 222 EEVILSIEETLQQQFGNAVVKEES-EKYNVVVLSEKLDAKGAADIVSLVMKELKVSPDKV 280

Query: 288 RVQYVS 293
            VQYV+
Sbjct: 281 TVQYVA 286


>B1DM88.1 B1DM88_9BACL Putative uncharacterized protein
          Length = 209

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 2/129 (1%)

Query: 164 DAAILDEVASQSVSASSLFTNYLYEREQKNLKDQNDLLALINDMDKTPAENATAXXXXXX 223
           D  +LD++ SQ    SS+F     +R + N   Q+ L++ I ++ + P ++ TA      
Sbjct: 82  DKQVLDQLESQGGVDSSVFAQAEEKRSELNSNQQDKLMSDITNL-QNPDDSKTAMEQLDQ 140

Query: 224 XXXXXXXITGIEEKLQQKYGEAIVKEEAGENYTVVVLSNKLDVKQAVGIVDLVMKELSVT 283
                  +T IE +L + + +AIV EE G  Y V+V S+KLD  QA  I+DLVMK L V 
Sbjct: 141 LEDKNSKLTSIENELMKTFQQAIVNEE-GNGYKVLVESDKLDKSQAANIIDLVMKTLGVD 199

Query: 284 QNKIRVQYV 292
            +++ VQ++
Sbjct: 200 ADQVSVQFI 208


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.303    0.121    0.309 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,248,273,699
Number of extensions: 40948191
Number of successful extensions: 84626
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 84632
Number of HSP's successfully gapped: 2
Length of query: 295
Length of database: 3,060,696,203
Length adjustment: 134
Effective length of query: 161
Effective length of database: 1,798,280,193
Effective search space: 289523111073
Effective search space used: 289523111073
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 131 (55.1 bits)