BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0011.p (214 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK36.1 B3KK36_9BACI Stage III sporulation protein AG 271 3e-71 B1DM89.1 B1DM89_9BACL Stage III sporulation protein AG 201 3e-50 C0ZBZ6.1 C0ZBZ6_BREBN Stage III sporulation protein AG 114 6e-24 B4AL54.1 B4AL54_BACPU Stage III sporulation protein AG 112 2e-23 A8FF21.1 A8FF21_BACP2 Stage III sporulation protein AG 112 2e-23 >B3KK36.1 B3KK36_9BACI Stage III sporulation protein AG Length = 215 Score = 271 bits (693), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 136/215 (63%), Positives = 161/215 (74%), Gaps = 2/215 (0%) Query: 1 MGNWLKKLEQWAXXXXXXXPKRGHTFRWXXXXXXXXXXXMLFNSFVNVKKLDSENTGREP 60 MGNWLK+LEQW K TFRW MLFNSFVNVKKLD EN GREP Sbjct: 2 MGNWLKRLEQWLGGGAGGARKM-QTFRWLIILGLIGVAIMLFNSFVNVKKLDHENIGREP 60 Query: 61 PPTESSQAALQ-QGNEAAPNSFAGIEQALEDRTKEILEKIVGVGTVDIMVTVDSTEEIVV 119 PP ++ + Q + + F IEQ E RTK +LE+IVGVG+VD+MVTV+STEE+VV Sbjct: 61 PPDTAAVSTTQGAASSSGGGEFESIEQDFEMRTKTMLEQIVGVGSVDVMVTVESTEELVV 120 Query: 120 QRNMNDSQQQSEETDASGGKRHTTQYTRDGEIVTYSQSGDETPIITKRIKPQVRGVLVVA 179 QRNM D+Q+ +EETDASGGKRH T Y RDG+IVTY SG+ETPI+TK+IKPQVRGVLVVA Sbjct: 121 QRNMKDTQELTEETDASGGKRHVTSYQRDGQIVTYDSSGEETPIVTKKIKPQVRGVLVVA 180 Query: 180 KGAENKVVRGLIEEAVEKGLNVPDYRISVVPRKQE 214 KGAEN+VV+ LI +A+++GLNVP YRISVVPRKQE Sbjct: 181 KGAENEVVKSLIVDAIQRGLNVPSYRISVVPRKQE 215 >B1DM89.1 B1DM89_9BACL Stage III sporulation protein AG Length = 210 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 109/213 (51%), Positives = 134/213 (62%), Gaps = 3/213 (1%) Query: 1 MGNWLKKLEQWAXXXXXXXPKRGHTFRWXXXXXXXXXXXMLFNSFVNVKKLDSENTGREP 60 M WL LE PKR TFR ML NSF+ K+D+ G P Sbjct: 1 MAKWLSGLESMVGGGPGG-PKRVKTFRLLLVIGCIGAALMLLNSFLKFDKVDTLTQGPNP 59 Query: 61 PPTESSQAALQQGNEAAPNSFAGIEQALEDRTKEILEKIVGVGTVDIMVTVDSTEEIVVQ 120 PP ++ AAL A + FA IE LE+R KEILEKIVGVG+VD++VT+DSTEEI V Sbjct: 60 PPQDT--AALSNSVSADSSPFAAIEGPLENRLKEILEKIVGVGSVDVLVTIDSTEEIEVA 117 Query: 121 RNMNDSQQQSEETDASGGKRHTTQYTRDGEIVTYSQSGDETPIITKRIKPQVRGVLVVAK 180 R DSQ ++ETD +GGKRH T +DG++V +GD+ PI+TK I P +RGVL+VAK Sbjct: 118 RTDQDSQSITDETDRNGGKRHITAINKDGQVVIAEVAGDQKPIVTKTINPSIRGVLIVAK 177 Query: 181 GAENKVVRGLIEEAVEKGLNVPDYRISVVPRKQ 213 GAEN+ VR LI +AVEKG+NVP RISV P KQ Sbjct: 178 GAENQTVRRLIIDAVEKGVNVPANRISVAPSKQ 210 >C0ZBZ6.1 C0ZBZ6_BREBN Stage III sporulation protein AG Length = 231 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 100/177 (56%), Gaps = 4/177 (2%) Query: 40 MLFNSFVNVKK---LDSENTGREPPPTESSQAALQ-QGNEAAPNSFAGIEQALEDRTKEI 95 M+ F+ V+K L + G E P A Q G + A E E + +EI Sbjct: 54 MILTDFLRVEKDQPLGFGDIGSEAPGPPGGDATSQVLGGSPTTDIIAEYENIYETQLREI 113 Query: 96 LEKIVGVGTVDIMVTVDSTEEIVVQRNMNDSQQQSEETDASGGKRHTTQYTRDGEIVTYS 155 L +VGVG V +MV ++ST E+VV++N N ++E D R+ +RD ++V Sbjct: 114 LASVVGVGEVQVMVNLESTPELVVEKNRNIRSSTNQEMDKEKATRNQNDQSRDEQVVIVQ 173 Query: 156 QSGDETPIITKRIKPQVRGVLVVAKGAENKVVRGLIEEAVEKGLNVPDYRISVVPRK 212 + P+I K +KP+VRGVLVVAKGA+N V+ I EAV+K L+VP Y+IS++P+K Sbjct: 174 GGKQDAPVIVKTLKPKVRGVLVVAKGADNIQVKAWITEAVQKVLDVPAYKISILPKK 230 >B4AL54.1 B4AL54_BACPU Stage III sporulation protein AG Length = 223 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 102/177 (57%), Gaps = 8/177 (4%) Query: 44 SFVNVKKLDSENTGREPPPTESSQAALQQGNEA--------APNSFAGIEQALEDRTKEI 95 SF+ V ++ S + +E +S+ Q E + NS +EQ E++ KEI Sbjct: 41 SFMLVSQILSPPSSKEQAAVPTSKKTTSQEQEVFKPASSSKSKNSIEDVEQEYENQLKEI 100 Query: 96 LEKIVGVGTVDIMVTVDSTEEIVVQRNMNDSQQQSEETDASGGKRHTTQYTRDGEIVTYS 155 LE I+GV V I+V VD+T V ++N ++ +EETD GG R T T++ EIV Sbjct: 101 LETIIGVEDVSIVVNVDATSLKVFEKNKSNKSTTTEETDKEGGVRSVTDQTKEEEIVIIK 160 Query: 156 QSGDETPIITKRIKPQVRGVLVVAKGAENKVVRGLIEEAVEKGLNVPDYRISVVPRK 212 +ETP++ + KP +RGVLVVA+G +N ++ I EAV + L+VP +R++V P+K Sbjct: 161 NGNEETPVVVQTKKPDIRGVLVVAQGVDNVQIKKTIIEAVTRVLDVPSHRVAVAPKK 217 >A8FF21.1 A8FF21_BACP2 Stage III sporulation protein AG Length = 223 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 102/177 (57%), Gaps = 8/177 (4%) Query: 44 SFVNVKKLDSENTGREPPPTESSQAALQQGNEA--------APNSFAGIEQALEDRTKEI 95 SF+ V ++ S + +E +S+ Q E + NS +EQ E++ KEI Sbjct: 41 SFMLVSQILSPPSSKEQAAVPASKKTTSQEQEVFKPASSSKSKNSIEDVEQEYENQLKEI 100 Query: 96 LEKIVGVGTVDIMVTVDSTEEIVVQRNMNDSQQQSEETDASGGKRHTTQYTRDGEIVTYS 155 LE I+GV V I+V VD+T V ++N ++ +EETD GG R T T++ EIV Sbjct: 101 LETIIGVEDVSIVVNVDATSLKVFEKNKSNKSTTTEETDKEGGVRSVTDQTKEEEIVIIK 160 Query: 156 QSGDETPIITKRIKPQVRGVLVVAKGAENKVVRGLIEEAVEKGLNVPDYRISVVPRK 212 +ETP++ + KP +RGVLVVA+G +N ++ I EAV + L+VP +R++V P+K Sbjct: 161 NGNEETPVVVQTKKPDIRGVLVVAQGVDNVQIKKTIIEAVTRVLDVPSHRVAVAPKK 217 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.129 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,147,759,175 Number of extensions: 42764033 Number of successful extensions: 108361 Number of sequences better than 1.0e-05: 182 Number of HSP's gapped: 108315 Number of HSP's successfully gapped: 182 Length of query: 214 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 84 Effective length of database: 1,835,964,253 Effective search space: 154220997252 Effective search space used: 154220997252 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 128 (53.9 bits)