BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0010.p
         (267 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK35.1 B3KK35_9BACI Putative uncharacterized protein                 85   9e-15
B1DM90.1 B1DM90_9BACL Stage III sporulation protein AF                 66   3e-09

>B3KK35.1 B3KK35_9BACI Putative uncharacterized protein
          Length = 239

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 7/143 (4%)

Query: 1   MTWLGDWLRELILVVLLAAFVEMLLPSKSMERYARXXXXXXXXXXXXXPIVSMLKGDATG 60
           M WLGDWL+ +I+VVL AAFV+++LP K++ERYAR             PI++++      
Sbjct: 1   MDWLGDWLKSVIMVVLFAAFVDLILPGKALERYARLVLSLLILLTLLSPIITLIADPPEN 60

Query: 61  ALSLAMNQQEQQXXXXXXXXXXXXSLEKILADGRMLAAGAQEQSLKLAAEEVAGQMRDQI 120
            L++ + +QE+              LE I+A    L    Q QSL+ A  E+A  M+++I
Sbjct: 61  QLAMELERQEK-------GLPEEIQLEHIMAQAEKLKDTQQSQSLQWAGNELAKVMKEEI 113

Query: 121 AGSTGLQGTKVTVKLGMGSASGS 143
           A  TG    +V V L   +  G 
Sbjct: 114 AAETGEAVQEVKVVLAAVAGQGK 136


>B1DM90.1 B1DM90_9BACL Stage III sporulation protein AF
          Length = 242

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%)

Query: 1  MTWLGDWLRELILVVLLAAFVEMLLPSKSMERYARXXXXXXXXXXXXXPIVSMLKGDATG 60
          + WL DWL+++I V++LAAFVE+LLP+K+M RYAR             PI+ +L+GD   
Sbjct: 2  IAWLSDWLKDIIAVIMLAAFVELLLPNKAMLRYARLVIGLLILLTIMSPILRLLQGDFNA 61

Query: 61 ALSLAMNQQEQ 71
           L   + Q +Q
Sbjct: 62 KLKDGITQWDQ 72


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.129    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 913,143,179
Number of extensions: 21964354
Number of successful extensions: 51645
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 51645
Number of HSP's successfully gapped: 2
Length of query: 267
Length of database: 3,060,696,203
Length adjustment: 133
Effective length of query: 134
Effective length of database: 1,807,701,208
Effective search space: 242231961872
Effective search space used: 242231961872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 130 (54.7 bits)