BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0008.p
         (129 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK33.1 B3KK33_9BACI Stage III sporulation protein AD                162   1e-38
B1DM92.1 B1DM92_9BACL Stage III sporulation protein AD                147   4e-34
C0ZBZ3.1 C0ZBZ3_BREBN Stage III sporulation protein AD                135   1e-30
P49781.1 SP3AD_BACSU Stage III sporulation protein AD                 134   4e-30
Q65HH9.1 Q65HH9_BACLD SpoIIIAD                                        120   5e-26

>B3KK33.1 B3KK33_9BACI Stage III sporulation protein AD
          Length = 129

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/129 (66%), Positives = 102/129 (79%)

Query: 1   MEIIQVVGIGLLSTVLILVLKEQKPMFAFLLTTAAXXXXXXXXXXXXXXXXXXXERVAES 60
           MEIIQVVG+G+++TVLIL++KEQKP+FAFLL  A                    E +AE+
Sbjct: 1   MEIIQVVGLGIIATVLILIVKEQKPLFAFLLAVATSLLIFLFLIGKIGNVISMLEDLAEN 60

Query: 61  SGMEMIYIKTVFKIIGISYIAEFGAQIVRDAGQESIASKIELAGKVLIMVLAVPIISIII 120
           SG+++IY+KTV KIIGI+YIAE GAQIVRDAGQESIASKIELAGKVLI+VLAVPII III
Sbjct: 61  SGVQIIYLKTVLKIIGIAYIAEMGAQIVRDAGQESIASKIELAGKVLILVLAVPIIGIII 120

Query: 121 ETVMKLLPT 129
           ETV+KLLP 
Sbjct: 121 ETVLKLLPA 129


>B1DM92.1 B1DM92_9BACL Stage III sporulation protein AD
          Length = 131

 Score =  147 bits (370), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 96/129 (74%)

Query: 1   MEIIQVVGIGLLSTVLILVLKEQKPMFAFLLTTAAXXXXXXXXXXXXXXXXXXXERVAES 60
           MEIIQ+VG+GL++T+LI+V++EQKP+FAFLL                       E +A  
Sbjct: 1   MEIIQIVGLGLIATILIIVVREQKPLFAFLLAAFTGLFIFIFLIGKIDSVIKVLEDLANR 60

Query: 61  SGMEMIYIKTVFKIIGISYIAEFGAQIVRDAGQESIASKIELAGKVLIMVLAVPIISIII 120
           SG+  IY+KT+ KIIGI+YI EFGAQIVRDAGQESIAS+IE AGKVLI+V+AVPIIS+I+
Sbjct: 61  SGIPSIYLKTILKIIGIAYIVEFGAQIVRDAGQESIASRIEFAGKVLILVMAVPIISVIV 120

Query: 121 ETVMKLLPT 129
           ETV+ LLP 
Sbjct: 121 ETVIGLLPA 129


>C0ZBZ3.1 C0ZBZ3_BREBN Stage III sporulation protein AD
          Length = 129

 Score =  135 bits (340), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 97/129 (75%)

Query: 1   MEIIQVVGIGLLSTVLILVLKEQKPMFAFLLTTAAXXXXXXXXXXXXXXXXXXXERVAES 60
           MEI+Q+VG+GL++T+L LV+KEQKPMFAFLL  A+                   ER+A  
Sbjct: 1   MEIVQIVGLGLVATILALVIKEQKPMFAFLLAIASGVIIFYFLVGKIAEVIRILERLAVQ 60

Query: 61  SGMEMIYIKTVFKIIGISYIAEFGAQIVRDAGQESIASKIELAGKVLIMVLAVPIISIII 120
           + + +++++T+ KIIGI+YIAEFGAQ+ RDAGQ +IASKIELAGKVLI+V+AVPII III
Sbjct: 61  ADLNLVFLETILKIIGIAYIAEFGAQMTRDAGQGAIASKIELAGKVLILVMAVPIIQIII 120

Query: 121 ETVMKLLPT 129
           ETV+ LLP 
Sbjct: 121 ETVIDLLPA 129


>P49781.1 SP3AD_BACSU Stage III sporulation protein AD
          Length = 133

 Score =  134 bits (336), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 97/129 (75%)

Query: 1   MEIIQVVGIGLLSTVLILVLKEQKPMFAFLLTTAAXXXXXXXXXXXXXXXXXXXERVAES 60
           ++I+Q+VG+GL++T L L++KEQKP FAFL+   A                   E++A +
Sbjct: 3   IDIVQIVGLGLIATFLSLIVKEQKPTFAFLIVVFAGCAIFLYLVDQIYDIIRMIEKIAIN 62

Query: 61  SGMEMIYIKTVFKIIGISYIAEFGAQIVRDAGQESIASKIELAGKVLIMVLAVPIISIII 120
           + + M+Y++T+ KIIGI+YIAEFGAQ+ +DAGQ +IASKIELAGK+LI+V+AVPI+++II
Sbjct: 63  ANVNMVYVETILKIIGIAYIAEFGAQLTKDAGQGAIASKIELAGKILILVMAVPILTVII 122

Query: 121 ETVMKLLPT 129
           ET++ L+P+
Sbjct: 123 ETILGLIPS 131


>Q65HH9.1 Q65HH9_BACLD SpoIIIAD
          Length = 121

 Score =  120 bits (300), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 87/119 (73%)

Query: 11  LLSTVLILVLKEQKPMFAFLLTTAAXXXXXXXXXXXXXXXXXXXERVAESSGMEMIYIKT 70
           +++T L L++KEQKP FAFL+   A                   E++A ++ + M+Y++T
Sbjct: 1   MIATFLSLIVKEQKPTFAFLIVVFAGCTIFLFLVDQVYEIIRMIEKIAANANINMMYVET 60

Query: 71  VFKIIGISYIAEFGAQIVRDAGQESIASKIELAGKVLIMVLAVPIISIIIETVMKLLPT 129
           + KIIGI+YIAEFGAQ+ +DAGQ +IASKIELAGK+LI+V+AVPI+++IIET++ L+P+
Sbjct: 61  ILKIIGIAYIAEFGAQLTKDAGQGAIASKIELAGKILILVMAVPILTVIIETIIGLIPS 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.326    0.141    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 476,591,912
Number of extensions: 12036956
Number of successful extensions: 42893
Number of sequences better than 1.0e-05: 186
Number of HSP's gapped: 42818
Number of HSP's successfully gapped: 186
Length of query: 129
Length of database: 3,060,696,203
Length adjustment: 94
Effective length of query: 35
Effective length of database: 2,175,120,793
Effective search space: 76129227755
Effective search space used: 76129227755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)