BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0006.p (172 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK31.1 B3KK31_9BACI Stage III sporulation protein AB 190 4e-47 B1DM94.1 B1DM94_9BACL Stage III sporulation protein AB 154 4e-36 Q01368.2 SP3AB_BACSU Stage III sporulation protein AB 132 2e-29 Q81M39.1 Q81M39_BACAN Stage III sporulation protein AB 130 5e-29 C3P7X1.1 C3P7X1_BACAA Stage III sporulation protein AB 130 5e-29 >B3KK31.1 B3KK31_9BACI Stage III sporulation protein AB Length = 172 Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 95/158 (60%), Positives = 119/158 (75%) Query: 1 MLKLFGAVLIVLAGTLAGFKRAAQYADRPRHIRGLIAALQRLETEIQYGYTPLPEALRRI 60 MLKL GAVL++ AGTLAGF +A Q+A RPR +R LI ALQRLETEI YG+TPLP+AL RI Sbjct: 1 MLKLVGAVLVLGAGTLAGFYQAQQFAARPRQLRELILALQRLETEISYGFTPLPDALERI 60 Query: 61 GMQSKDPLKAFFTTAADEMSPPLDRSAEAAISKAMEEHWKTASLKGTEKEILRQLSCTLG 120 G+ ++PLK+ +AA M P SA+ +I KA+ E+W+ S+K E+E+L QLS LG Sbjct: 61 GVSLREPLKSLLASAALYMRPDYGLSAQDSIRKALGEYWRRTSMKSAEREVLEQLSGVLG 120 Query: 121 TSDRSNQSTHIALALQQLKQEETAAREDQGKYEKMNKS 158 TSDR +Q HIALA+ QLK EE AAR+DQ KYEKM+KS Sbjct: 121 TSDRQDQIKHIALAVGQLKHEEAAARDDQVKYEKMSKS 158 >B1DM94.1 B1DM94_9BACL Stage III sporulation protein AB Length = 172 Score = 154 bits (388), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 81/158 (51%), Positives = 104/158 (65%) Query: 1 MLKLFGAVLIVLAGTLAGFKRAAQYADRPRHIRGLIAALQRLETEIQYGYTPLPEALRRI 60 M+KL GAVLI+ AGT+ GF++AA+ A RPR +R L ALQRLETEI YG+TPLPEAL R Sbjct: 1 MIKLLGAVLILFAGTMIGFQQAARLAARPRQLRQLAHALQRLETEIGYGHTPLPEALERT 60 Query: 61 GMQSKDPLKAFFTTAADEMSPPLDRSAEAAISKAMEEHWKTASLKGTEKEILRQLSCTLG 120 +PL AAD + P + + +AM W T +L+ TE+ ++ +L TLG Sbjct: 61 AEAVPEPLAELLRDAADRVQGPEGLTFRESWEQAMTSGWGTTALRQTEQSVMLRLGSTLG 120 Query: 121 TSDRSNQSTHIALALQQLKQEETAAREDQGKYEKMNKS 158 SD+ +Q HI LAL QLK EE AAR+DQ +YEKM KS Sbjct: 121 ISDKEDQLKHIHLALLQLKAEEDAARDDQSRYEKMWKS 158 >Q01368.2 SP3AB_BACSU Stage III sporulation protein AB Length = 171 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/158 (46%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 1 MLKLFGAVLIVLAGTLAGFKRAAQYADRPRHIRGLIAALQRLETEIQYGYTPLPEALRRI 60 MLKL GAV IV+A T GF+ A Y +RPR IR L AALQ LE EI YG+TPL A ++I Sbjct: 1 MLKLLGAVFIVVATTWTGFEMAKIYTERPRQIRQLRAALQSLEAEIMYGHTPLHTASQQI 60 Query: 61 GMQSKDPLKAFFTTAADEMSPPLDRSAEAAISKAMEEHWKTASLKGTEKEILRQLSCTLG 120 Q P+ F+ +D++ D SA+ A +++++ W T SLK +E E+L+Q TLG Sbjct: 61 AKQLAQPVSTLFSAFSDQLDKGSD-SAKTAWEQSLKKVWDTLSLKKSEYEVLKQFGETLG 119 Query: 121 TSDRSNQSTHIALALQQLKQEETAAREDQGKYEKMNKS 158 DR +Q HI LAL L+ E A + Q K EKM KS Sbjct: 120 IHDRISQQKHIKLALTHLEASEADAEQAQAKNEKMIKS 157 >Q81M39.1 Q81M39_BACAN Stage III sporulation protein AB Length = 171 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 96/158 (60%), Gaps = 1/158 (0%) Query: 1 MLKLFGAVLIVLAGTLAGFKRAAQYADRPRHIRGLIAALQRLETEIQYGYTPLPEALRRI 60 M+K+FGAVLIV T GF A +Y++RPR +R L AALQ LE EI YG+TPL EA R+ Sbjct: 1 MVKIFGAVLIVAVSTFFGFSYAKRYSERPRQLRLLKAALQSLEAEIMYGHTPLSEAAERL 60 Query: 61 GMQSKDPLKAFFTTAADEMSPPLDRSAEAAISKAMEEHWKTASLKGTEKEILRQLSCTLG 120 Q PL F + A+ + EA I +++E+WK + + TE EIL+Q TLG Sbjct: 61 VKQMPKPLNWIFQSFANRLESGEQTVREAWID-SLKENWKLTAFQQTEYEILQQFGETLG 119 Query: 121 TSDRSNQSTHIALALQQLKQEETAAREDQGKYEKMNKS 158 DR +Q HI L + L++EE A+ Q +YEKM KS Sbjct: 120 QHDRESQQKHIRLCITHLEREEEEAKVLQMQYEKMIKS 157 >C3P7X1.1 C3P7X1_BACAA Stage III sporulation protein AB Length = 171 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 96/158 (60%), Gaps = 1/158 (0%) Query: 1 MLKLFGAVLIVLAGTLAGFKRAAQYADRPRHIRGLIAALQRLETEIQYGYTPLPEALRRI 60 M+K+FGAVLIV T GF A +Y++RPR +R L AALQ LE EI YG+TPL EA R+ Sbjct: 1 MVKIFGAVLIVAVSTFFGFSYAKRYSERPRQLRLLKAALQSLEAEIMYGHTPLSEAAERL 60 Query: 61 GMQSKDPLKAFFTTAADEMSPPLDRSAEAAISKAMEEHWKTASLKGTEKEILRQLSCTLG 120 Q PL F + A+ + EA I +++E+WK + + TE EIL+Q TLG Sbjct: 61 VKQMPKPLNWIFQSFANRLESGEQTVREAWID-SLKENWKLTAFQQTEYEILQQFGETLG 119 Query: 121 TSDRSNQSTHIALALQQLKQEETAAREDQGKYEKMNKS 158 DR +Q HI L + L++EE A+ Q +YEKM KS Sbjct: 120 QHDRESQQKHIRLCITHLEREEEEAKVLQMQYEKMIKS 157 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.129 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 800,781,244 Number of extensions: 27253810 Number of successful extensions: 83239 Number of sequences better than 1.0e-05: 162 Number of HSP's gapped: 83136 Number of HSP's successfully gapped: 162 Length of query: 172 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 46 Effective length of database: 1,873,648,313 Effective search space: 86187822398 Effective search space used: 86187822398 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)