BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0004.p
         (82 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK29.1 B3KK29_9BACI Putative uncharacterized protein                 88   2e-16
B1DM96.1 B1DM96_9BACL Putative uncharacterized protein                 79   1e-13
C5D485.1 C5D485_9BACI Putative uncharacterized protein                 66   9e-10
A4IQT3.1 A4IQT3_GEOTN Putative uncharacterized protein                 64   4e-09
B4BLJ8.1 B4BLJ8_9BACI Putative uncharacterized protein                 64   4e-09

>B3KK29.1 B3KK29_9BACI Putative uncharacterized protein
          Length = 88

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 48/59 (81%)

Query: 24 LNQVDKALAVNSGLALVGPTILILTTAVGLTGMAQDLSWGKLGWIGCGVAFLLIGILKK 82
          LNQVDKALAVNS LA  GP ILILTT +GL GMA  LSWGK+GWI CGV+ LL G+LKK
Sbjct: 30 LNQVDKALAVNSALAFTGPLILILTTTIGLVGMADKLSWGKIGWILCGVSCLLYGVLKK 88


>B1DM96.1 B1DM96_9BACL Putative uncharacterized protein
          Length = 88

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 45/59 (76%)

Query: 24 LNQVDKALAVNSGLALVGPTILILTTAVGLTGMAQDLSWGKLGWIGCGVAFLLIGILKK 82
          LNQ+DKAL VNS LALVGP ILI TT +GL GM   LS+GKL W+  GV  LLIGI+KK
Sbjct: 30 LNQIDKALVVNSSLALVGPFILIATTTIGLIGMTDKLSFGKLAWVAAGVVCLLIGIIKK 88


>C5D485.1 C5D485_9BACI Putative uncharacterized protein
          Length = 93

 Score = 66.2 bits (160), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query: 24 LNQVDKALAVNSGLALVGPTILILTTAVGLTGMAQDLSWGKLGWIGCGVAFLLIGILK 81
           N V KALAVN+ LA+VGPTI I+T  +GL  +A +LS+ KLG+I  GV  +LIGI K
Sbjct: 36 FNDVKKALAVNAILAVVGPTIFIITMTIGLLSLADELSFSKLGFIALGVILILIGIYK 93


>A4IQT3.1 A4IQT3_GEOTN Putative uncharacterized protein
          Length = 93

 Score = 63.9 bits (154), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 24 LNQVDKALAVNSGLALVGPTILILTTAVGLTGMAQDLSWGKLGWIGCGVAFLLIGILK 81
           N V KALA+N+GLA+VGPT++I+T  +GL  +A +LS+ +LG +  GVA +L  I K
Sbjct: 36 FNDVKKALAINAGLAVVGPTVMIVTMTIGLLSLADELSFSRLGLVALGVALILFAIYK 93


>B4BLJ8.1 B4BLJ8_9BACI Putative uncharacterized protein
          Length = 93

 Score = 63.9 bits (154), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 24 LNQVDKALAVNSGLALVGPTILILTTAVGLTGMAQDLSWGKLGWIGCGVAFLLIGILK 81
           N V KALA+N+GLA+VGPT++I+T  +GL  +A +LS+ +LG +  GVA +L  I K
Sbjct: 36 FNDVKKALAINAGLAVVGPTVMIVTMTIGLLSLADELSFSRLGLVALGVALILFAIYK 93


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.143    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 399,546,765
Number of extensions: 14571616
Number of successful extensions: 32239
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 32239
Number of HSP's successfully gapped: 18
Length of query: 82
Length of database: 3,060,696,203
Length adjustment: 52
Effective length of query: 30
Effective length of database: 2,570,803,423
Effective search space: 77124102690
Effective search space used: 77124102690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)