BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0003.p (301 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DL40.1 B1DL40_9BACL Putative uncharacterized protein 246 1e-63 B3KLC9.1 B3KLC9_9BACI Putative uncharacterized protein 234 6e-60 A3I560.1 A3I560_9BACI Putative uncharacterized protein 201 9e-50 B1HT54.1 B1HT54_LYSSC Hypothetical yitT protein 200 1e-49 Q2B2W3.1 Q2B2W3_9BACI Putative uncharacterized protein 200 2e-49 >B1DL40.1 B1DL40_9BACL Putative uncharacterized protein Length = 279 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 122/271 (45%), Positives = 174/271 (64%), Gaps = 2/271 (0%) Query: 30 KQVKEVAIIIFSAFLVASGLRLFLIPHQXXXXXXXXXXXXIGYLTNPKYISLYYFAINLP 89 K ++ A L+A LFLIPHQ IGY+T I Y +N+P Sbjct: 7 KPAVTAVVMTIGALLIAGAFNLFLIPHQLLSGGLSGVAMMIGYITGGN-IGWLYLVLNVP 65 Query: 90 ILIWGFVAVGKKYIFYSLLSVVATTWFLTVIPLIKLTKDPILXXXXXXXXXXXXXXXXLR 149 +L+WG+ VG+++I +S+ +V+A+T FL +IP+ + KD +L LR Sbjct: 66 VLVWGWFIVGRRFIVWSMYTVLASTLFLQLIPVTAIAKDLVLASVFGGIILGVGTGMTLR 125 Query: 150 AGGSSGGFDILGSIITRKRDIPMGTVLFVLDGLVILSLGFF-KSWDSALYAMLCIFVKSR 208 GGSSGGFDI+ SIITRKRD+P+G+++F L+GLVI +L + + W+ ALY++L I++ + Sbjct: 126 YGGSSGGFDIIASIITRKRDLPVGSIIFTLNGLVIAALVLYTQDWNLALYSLLSIYIAGK 185 Query: 209 VVDMIHIRHIKLTCFIITKEREKMLNRLTCLPHGITVVNAEGGYSHEGNTMLMTVTTRYE 268 VVD+IH+RHIK+T FIIT + E+ML +L P GIT++ G Y+ MLMTV TRYE Sbjct: 186 VVDIIHVRHIKVTAFIITTKTEEMLTKLLNHPRGITIIKTRGAYTSAEQDMLMTVRTRYE 245 Query: 269 LAELRKTILETDPKSFVNVLETVEIVGRFRR 299 LAELRKTI D ++FVN++ETV ++G FRR Sbjct: 246 LAELRKTIASIDNRAFVNIVETVGVIGDFRR 276 >B3KLC9.1 B3KLC9_9BACI Putative uncharacterized protein Length = 273 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 115/263 (43%), Positives = 171/263 (65%), Gaps = 2/263 (0%) Query: 38 IIFSAFLVASGLRLFLIPHQXXXXXXXXXXXXIGYLTNPKYISLYYFAINLPILIWGFVA 97 I+F ++A+G LFLIPH IGY T P IS+ YF +N+PILI G+ Sbjct: 11 IVFGGMIIAAGFNLFLIPHHLLSGGVSGVALVIGYFT-PLNISIMYFVLNIPILITGWFK 69 Query: 98 VGKKYIFYSLLSVVATTWFLTVIPLIKLTKDPILXXXXXXXXXXXXXXXXLRAGGSSGGF 157 +GK+++ S+LSV+ TT FL +IP+ + D +L R GGS+GGF Sbjct: 70 LGKRFVGLSILSVIVTTLFLELIPVNHVATDMLLSSVFGGVLVGFGTGLSFRVGGSTGGF 129 Query: 158 DILGSIITRKRDIPMGTVLFVLDGLVILSLGFF-KSWDSALYAMLCIFVKSRVVDMIHIR 216 DI+GS++T+ RD P+G+VL L+ +VI+++ + + W+ AL +M I+V ++VDM+HI Sbjct: 130 DIIGSLVTKYRDFPVGSVLVTLNAIVIMAVAYLEQDWNLALASMASIYVAGKMVDMLHIS 189 Query: 217 HIKLTCFIITKEREKMLNRLTCLPHGITVVNAEGGYSHEGNTMLMTVTTRYELAELRKTI 276 HIK+T FI+T E +L +L P GIT + +G +SH+ MLMTVTTRYELAEL++ I Sbjct: 190 HIKVTVFIVTNRTEALLEKLLKRPRGITKIKTQGAFSHKEKDMLMTVTTRYELAELKQII 249 Query: 277 LETDPKSFVNVLETVEIVGRFRR 299 ETDP++FVN++ET ++G+FR+ Sbjct: 250 TETDPEAFVNIVETTAVMGQFRK 272 >A3I560.1 A3I560_9BACI Putative uncharacterized protein Length = 272 Score = 201 bits (510), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 111/269 (41%), Positives = 167/269 (62%), Gaps = 2/269 (0%) Query: 32 VKEVAIIIFSAFLVASGLRLFLIPHQXXXXXXXXXXXXIGYLTNPKYISLYYFAINLPIL 91 ++ V II S+ LVA LIPH+ +G +T P + +NLP+L Sbjct: 1 MRNVIIITLSSILVAFAYNFLLIPHEILSGGLSGIAIMLGIIT-PLNTGVLNLLLNLPLL 59 Query: 92 IWGFVAVGKKYIFYSLLSVVATTWFLTVIPLIKLTKDPILXXXXXXXXXXXXXXXXLRAG 151 I G + +GK++I Y++LSV + L +IP+ K T++PIL RA Sbjct: 60 ILGVMKLGKRFISYTILSVAVLSVSLYIIPIYKATQEPILASLFGGVIVGVAMGLIFRAA 119 Query: 152 GSSGGFDILGSIITRKRDIPMGTVLFVLDGLVILSLGFFKSWDSALYAMLCIFVKSRVVD 211 GSSGGFDI+ +++RKRD P+GT++ ++G+V+ + GF SWD+AL ++ I+ +VVD Sbjct: 120 GSSGGFDIIAMLLSRKRDFPLGTLIAAMNGIVVAASGFVFSWDAALLTLVSIYATGKVVD 179 Query: 212 MIHIRHIKLTCFIITKEREKMLNR-LTCLPHGITVVNAEGGYSHEGNTMLMTVTTRYELA 270 IH HIKLT IIT + E++ + L L G+T+++A+G YS EG +L+TV TRY+LA Sbjct: 180 TIHTSHIKLTLMIITNKGEEVKQQLLEKLHRGVTIIDAKGAYSGEGRQVLITVITRYQLA 239 Query: 271 ELRKTILETDPKSFVNVLETVEIVGRFRR 299 +++ TI ETDPKSFVN+L+T E++G F R Sbjct: 240 DVKSTIKETDPKSFVNILQTTEVMGMFDR 268 >B1HT54.1 B1HT54_LYSSC Hypothetical yitT protein Length = 272 Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/269 (41%), Positives = 167/269 (62%), Gaps = 2/269 (0%) Query: 32 VKEVAIIIFSAFLVASGLRLFLIPHQXXXXXXXXXXXXIGYLTNPKYISLYYFAINLPIL 91 ++ V II S+ LVA LIPH+ +G +T P + +NLP+L Sbjct: 1 MRNVIIITLSSVLVAFAYNFLLIPHEILSGGLSGIAIMLGIIT-PLNTGVLNLLLNLPLL 59 Query: 92 IWGFVAVGKKYIFYSLLSVVATTWFLTVIPLIKLTKDPILXXXXXXXXXXXXXXXXLRAG 151 I G + +GK++I Y++LSV + L +IP+ K T++PIL RA Sbjct: 60 ILGVMKLGKRFISYTILSVAVLSVSLYIIPIYKATQEPILASLFGGVIVGVAMGLIFRAA 119 Query: 152 GSSGGFDILGSIITRKRDIPMGTVLFVLDGLVILSLGFFKSWDSALYAMLCIFVKSRVVD 211 GSSGGFDI+ +++RKRD P+GT++ ++G+V+ + GF SWD+AL ++ I+ +VVD Sbjct: 120 GSSGGFDIIAMLLSRKRDFPLGTLIAAMNGIVVAASGFVFSWDAALLTLVSIYATGKVVD 179 Query: 212 MIHIRHIKLTCFIITKEREKMLNR-LTCLPHGITVVNAEGGYSHEGNTMLMTVTTRYELA 270 IH HIKLT IIT + E++ + L L G+T+++A+G YS EG +L+TV TRY+LA Sbjct: 180 TIHTSHIKLTLMIITNKGEEVKQQLLEKLHRGVTIIDAKGAYSGEGRKVLITVITRYQLA 239 Query: 271 ELRKTILETDPKSFVNVLETVEIVGRFRR 299 +++ TI ETDPKSFVN+L+T E++G F R Sbjct: 240 DVKSTIKETDPKSFVNILQTTEVMGMFDR 268 >Q2B2W3.1 Q2B2W3_9BACI Putative uncharacterized protein Length = 269 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/269 (40%), Positives = 168/269 (62%), Gaps = 2/269 (0%) Query: 32 VKEVAIIIFSAFLVASGLRLFLIPHQXXXXXXXXXXXXIGYLTNPKYISLYYFAINLPIL 91 +K + III + +V LFLIPH+ +G +T P L F +NLP+L Sbjct: 1 MKNLLIIILGSAIVGFAYNLFLIPHEILSSGLSGVAIMLGIIT-PFNTGLLNFLLNLPLL 59 Query: 92 IWGFVAVGKKYIFYSLLSVVATTWFLTVIPLIKLTKDPILXXXXXXXXXXXXXXXXLRAG 151 I G + +GK++IFY+++SV+ + L +IP+ ++ +PIL +A Sbjct: 60 ILGVIKLGKRFIFYTIVSVLTLSVSLYLIPVNAISSEPILSSVFGGVLTGAGIGLVFKAS 119 Query: 152 GSSGGFDILGSIITRKRDIPMGTVLFVLDGLVILSLGFFKSWDSALYAMLCIFVKSRVVD 211 GSSGGFDI+ ++TRK+D P+G +L +++ +V+L+ GF SWD+AL M+ I+ +VVD Sbjct: 120 GSSGGFDIIAMLLTRKKDFPLGAILSLMNAIVVLASGFIFSWDAALNTMVAIYATGKVVD 179 Query: 212 MIHIRHIKLTCFIITKEREKMLNR-LTCLPHGITVVNAEGGYSHEGNTMLMTVTTRYELA 270 IH +HIKLT I+T + E+M + L+ + GITV+N EGGY+ EG +LMTV TRY+L Sbjct: 180 TIHTKHIKLTVMIVTAKGEEMKAKLLSSIYRGITVINGEGGYTGEGRKILMTVITRYQLT 239 Query: 271 ELRKTILETDPKSFVNVLETVEIVGRFRR 299 E++ I E DP++FVN+ ET E++G F R Sbjct: 240 EVKSMIDEVDPQAFVNITETTEVLGSFHR 268 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.143 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,511,544,795 Number of extensions: 53820866 Number of successful extensions: 161669 Number of sequences better than 1.0e-05: 1735 Number of HSP's gapped: 157931 Number of HSP's successfully gapped: 1735 Length of query: 301 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 166 Effective length of database: 1,788,859,178 Effective search space: 296950623548 Effective search space used: 296950623548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)