BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0001.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK46.1 B3KK46_9BACI Exodeoxyribonuclease 7 large subunit EC=3.... 381 e-104 B1DM80.1 B1DM80_9BACL Exodeoxyribonuclease 7 large subunit EC=3.... 375 e-102 C0ZC06.1 EX7L_BREBN Exodeoxyribonuclease 7 large subunit EC=3.1.... 314 6e-84 C3J0P6.1 C3J0P6_9BACI Exodeoxyribonuclease VII, large subunit EC... 302 2e-80 B7YCG6.1 B7YCG6_9BACI Exodeoxyribonuclease 7 large subunit EC=3.... 302 2e-80 >B3KK46.1 B3KK46_9BACI Exodeoxyribonuclease 7 large subunit EC=3.1.11.6 Length = 461 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/248 (72%), Positives = 205/248 (82%), Gaps = 8/248 (3%) Query: 6 QVYSIKELNRYIRMKXXXXXXXXXXWVRGEISNFTHHGSGHMYFTLKDESSRIKSIMFAS 65 +V S+K+LNRYIRMK W+RGEISNFTHH SGHMYFTLKDE SRI++IMFA+ Sbjct: 13 RVLSVKDLNRYIRMKMEGDSRLSDVWIRGEISNFTHHSSGHMYFTLKDEGSRIRAIMFAT 72 Query: 66 HNQRLPFVPKEGTKVIARGNVTVYERDGQYQFYATHMQPDGIGSLYLAYEQLKNKLELEG 125 HNQRLPF+PKEG++VIARGNV+VYERDGQYQFYA MQPDGIGSLYLAYEQLK+KLE EG Sbjct: 73 HNQRLPFIPKEGSRVIARGNVSVYERDGQYQFYAVQMQPDGIGSLYLAYEQLKSKLEEEG 132 Query: 126 LFAAARKRPLPRFPRCIGVVTSPTGAAVRDIIITLQRRFPQVAVVLYPVLVQGKGAGPSI 185 LFAA RKRPLPR+P+ IGV+TSPTGAAVRDI+IT++RR+PQ +LYPVLVQGKGA PSI Sbjct: 133 LFAADRKRPLPRYPKTIGVITSPTGAAVRDIMITIRRRYPQANAILYPVLVQGKGAAPSI 192 Query: 186 VKAIQNLNAMGEADVLIVGRGGGSLEELWAFNEEAVARAIAASGIPVSCTFSTYPVGH-- 243 VKAI+ +N M EADVLIVGRGGGSLEELWAFNEE VARAI S IP+ VGH Sbjct: 193 VKAIRTMNDMAEADVLIVGRGGGSLEELWAFNEEIVARAIYQSHIPIVSA-----VGHET 247 Query: 244 -MGLCDFV 250 + DFV Sbjct: 248 DFTIADFV 255 >B1DM80.1 B1DM80_9BACL Exodeoxyribonuclease 7 large subunit EC=3.1.11.6 Length = 457 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/253 (71%), Positives = 205/253 (81%), Gaps = 8/253 (3%) Query: 1 MAPERQVYSIKELNRYIRMKXXXXXXXXXXWVRGEISNFTHHGSGHMYFTLKDESSRIKS 60 MA + ++YSIK++NRYIRMK W+RGEISNFTHH SGHMYFTLKD+ SR+K Sbjct: 1 MADQPRIYSIKDINRYIRMKLESDVLLSDVWLRGEISNFTHHSSGHMYFTLKDKDSRLKC 60 Query: 61 IMFASHNQRLPFVPKEGTKVIARGNVTVYERDGQYQFYATHMQPDGIGSLYLAYEQLKNK 120 IMFASHNQRLPF+P+EGTKV+ARGNV+VYERDG YQFY T MQPDGIGSLYLAYEQLK+K Sbjct: 61 IMFASHNQRLPFIPREGTKVMARGNVSVYERDGNYQFYVTAMQPDGIGSLYLAYEQLKSK 120 Query: 121 LELEGLFAAARKRPLPRFPRCIGVVTSPTGAAVRDIIITLQRRFPQVAVVLYPVLVQGKG 180 LE EGLFA +RKRP+PRFPR IGV+TSPTGAAVRDII TLQRR P + + ++PVLVQG Sbjct: 121 LETEGLFAESRKRPIPRFPRAIGVITSPTGAAVRDIITTLQRRHPSIPIYVFPVLVQGTQ 180 Query: 181 AGPSIVKAIQNLNAMGEADVLIVGRGGGSLEELWAFNEEAVARAIAASGIPVSCTFSTYP 240 A PSIVKAI+++N GE DVLIVGRGGGSLEELWAFNEE VAR+IAAS IPV Sbjct: 181 AAPSIVKAIESMNRFGEVDVLIVGRGGGSLEELWAFNEEPVARSIAASQIPVISA----- 235 Query: 241 VGH---MGLCDFV 250 VGH + DFV Sbjct: 236 VGHETDFTIADFV 248 >C0ZC06.1 EX7L_BREBN Exodeoxyribonuclease 7 large subunit EC=3.1.11.6 Length = 460 Score = 314 bits (804), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 153/249 (61%), Positives = 185/249 (74%), Gaps = 8/249 (3%) Query: 5 RQVYSIKELNRYIRMKXXXXXXXXXXWVRGEISNFTHHGSGHMYFTLKDESSRIKSIMFA 64 + + S+ +LNRYI++ WVRGEISNFTHH SGHMYFTLKD+ SRIK +MFA Sbjct: 4 QDILSVSDLNRYIKLVLEKEPHLQDIWVRGEISNFTHHSSGHMYFTLKDKQSRIKVVMFA 63 Query: 65 SHNQRLPFVPKEGTKVIARGNVTVYERDGQYQFYATHMQPDGIGSLYLAYEQLKNKLELE 124 S+N+ L F+PK+G K I RG+++ YERDG YQFYA MQPDG+GSLYLA+EQLK KL E Sbjct: 64 SYNRFLRFLPKDGAKAIVRGSISAYERDGAYQFYAKEMQPDGLGSLYLAFEQLKEKLAQE 123 Query: 125 GLFAAARKRPLPRFPRCIGVVTSPTGAAVRDIIITLQRRFPQVAVVLYPVLVQGKGAGPS 184 GLFAA RKR LPRFP+ +GVVTSPTGAA+RDI T++RR+PQ +VL P +VQG A S Sbjct: 124 GLFAAERKRMLPRFPKRVGVVTSPTGAAIRDICTTIRRRYPQAEIVLSPAVVQGADAPAS 183 Query: 185 IVKAIQNLNAMGEADVLIVGRGGGSLEELWAFNEEAVARAIAASGIPVSCTFSTYPVGH- 243 IV AI+ +N + DVLIVGRGGGS+EELWAFN+E VARAIA S IPV VGH Sbjct: 184 IVSAIRIMNDQPDIDVLIVGRGGGSIEELWAFNDENVARAIATSLIPVISA-----VGHE 238 Query: 244 --MGLCDFV 250 + + DFV Sbjct: 239 TDVTIADFV 247 >C3J0P6.1 C3J0P6_9BACI Exodeoxyribonuclease VII, large subunit EC=3.1.11.6 Length = 448 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 146/245 (59%), Positives = 176/245 (71%), Gaps = 8/245 (3%) Query: 9 SIKELNRYIRMKXXXXXXXXXXWVRGEISNFTHHGSGHMYFTLKDESSRIKSIMFASHNQ 68 ++ L +YI+ K WV+GEISNF H GHMYFTLKD RI ++MFA +NQ Sbjct: 7 TVGALTKYIKRKFDVDPHLRDLWVKGEISNFKQHSRGHMYFTLKDSQGRIAAVMFAGYNQ 66 Query: 69 RLPFVPKEGTKVIARGNVTVYERDGQYQFYATHMQPDGIGSLYLAYEQLKNKLELEGLFA 128 LPF P++G V+ARG ++VYE +G YQ Y MQP+G+GSLYLAYEQLK +LE EGLF+ Sbjct: 67 YLPFRPEDGMNVLARGEISVYEPNGNYQLYVKEMQPEGVGSLYLAYEQLKQRLEAEGLFS 126 Query: 129 AARKRPLPRFPRCIGVVTSPTGAAVRDIIITLQRRFPQVAVVLYPVLVQGKGAGPSIVKA 188 K+PLP FPRCIGVVTSPTGAAVRDI+ T++RR+P V+L+P LVQG GA PSIV+A Sbjct: 127 PVHKKPLPAFPRCIGVVTSPTGAAVRDIMTTIRRRYPLAKVILFPALVQGDGAAPSIVRA 186 Query: 189 IQNLNAMGEADVLIVGRGGGSLEELWAFNEEAVARAIAASGIPVSCTFSTYPVGH---MG 245 I+ NA G DVLIVGRGGGS+EELWAFNEE VARAI AS IP+ VGH Sbjct: 187 IERANAFGGVDVLIVGRGGGSIEELWAFNEEIVARAIFASKIPIISA-----VGHETDFT 241 Query: 246 LCDFV 250 + DFV Sbjct: 242 IADFV 246 >B7YCG6.1 B7YCG6_9BACI Exodeoxyribonuclease 7 large subunit EC=3.1.11.6 Length = 448 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 146/245 (59%), Positives = 176/245 (71%), Gaps = 8/245 (3%) Query: 9 SIKELNRYIRMKXXXXXXXXXXWVRGEISNFTHHGSGHMYFTLKDESSRIKSIMFASHNQ 68 ++ L +YI+ K WV+GEISNF H GHMYFTLKD RI ++MFA +NQ Sbjct: 7 TVGALTKYIKRKFDVDPHLRDLWVKGEISNFKQHSRGHMYFTLKDSQGRIAAVMFAGYNQ 66 Query: 69 RLPFVPKEGTKVIARGNVTVYERDGQYQFYATHMQPDGIGSLYLAYEQLKNKLELEGLFA 128 LPF P++G V+ARG ++VYE +G YQ Y MQP+G+GSLYLAYEQLK +LE EGLF+ Sbjct: 67 YLPFRPEDGMNVLARGEISVYEPNGNYQLYVKEMQPEGVGSLYLAYEQLKQRLEAEGLFS 126 Query: 129 AARKRPLPRFPRCIGVVTSPTGAAVRDIIITLQRRFPQVAVVLYPVLVQGKGAGPSIVKA 188 K+PLP FPRCIGVVTSPTGAAVRDI+ T++RR+P V+L+P LVQG GA PSIV+A Sbjct: 127 PVHKKPLPAFPRCIGVVTSPTGAAVRDIMTTIRRRYPLAKVILFPALVQGDGAAPSIVRA 186 Query: 189 IQNLNAMGEADVLIVGRGGGSLEELWAFNEEAVARAIAASGIPVSCTFSTYPVGH---MG 245 I+ NA G DVLIVGRGGGS+EELWAFNEE VARAI AS IP+ VGH Sbjct: 187 IERANAFGGVDVLIVGRGGGSIEELWAFNEEIVARAIFASKIPIISA-----VGHETDFT 241 Query: 246 LCDFV 250 + DFV Sbjct: 242 IADFV 246 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,618,319,000 Number of extensions: 67203198 Number of successful extensions: 150560 Number of sequences better than 1.0e-05: 1340 Number of HSP's gapped: 149585 Number of HSP's successfully gapped: 1340 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)