BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0135.0009.p (232 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K515.1 B3K515_9BACI Response regulator receiver 387 e-106 C0ZK69.1 C0ZK69_BREBN Two-component response regulator 283 7e-75 A9VFZ6.1 A9VFZ6_BACWK Two component transcriptional regulator, w... 279 1e-73 C3A626.1 C3A626_BACMY DNA-binding response regulator 279 1e-73 C2SKG2.1 C2SKG2_BACCE DNA-binding response regulator 276 8e-73 >B3K515.1 B3K515_9BACI Response regulator receiver Length = 319 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 181/231 (78%), Positives = 203/231 (87%) Query: 1 MFKIFIIEDDRGLVMLLQDYLHKFGYETQAVHDFEAVRAEFESFAPHLVLLDVNLPKFDG 60 MFKIFI+EDD GLV LL++YLHKFGY TQ+VHDFE VR +FES+ PHLVLLD+NLPKFDG Sbjct: 87 MFKIFIVEDDAGLVGLLKEYLHKFGYATQSVHDFETVRDQFESYDPHLVLLDINLPKFDG 146 Query: 61 YYWCRQIRGLSTCPILFISAREGKMDQVMALENGADDYITKPFDYEIALAKIKSHLRRAY 120 YYWCRQ R LSTCPI+FISAR+GKMDQVMALENGADDYITKPFDYEI +AKIKS LRRAY Sbjct: 147 YYWCRQFRSLSTCPIIFISARDGKMDQVMALENGADDYITKPFDYEIVMAKIKSQLRRAY 206 Query: 121 GSYAGGGTERSLTVAGLMLDVERLVLSRGSAKIDLSHTEAKILDELMQKAGTVVTRDRLL 180 GSYA G ER L++AGL LDVERL +S G + +LSHTEAKILDELM+K +V+RDRLL Sbjct: 207 GSYAAGQNERVLSIAGLTLDVERLSVSLGPTQAELSHTEAKILDELMKKPEQIVSRDRLL 266 Query: 181 EKIWDDQAFVDDNTLNVYVTRVRKKLAALDIADGLQTVRGQGYRLCENWEE 231 EKIWDDQAFVDDNTLNVY+TRVRKKLAAL I DGLQTVRG+GYRL +W + Sbjct: 267 EKIWDDQAFVDDNTLNVYITRVRKKLAALGIEDGLQTVRGRGYRLVPSWRD 317 >C0ZK69.1 C0ZK69_BREBN Two-component response regulator Length = 232 Score = 283 bits (725), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 141/232 (60%), Positives = 170/232 (73%), Gaps = 1/232 (0%) Query: 1 MFKIFIIEDDRGLVMLLQDYLHKFGYETQAVHDFEAVRAEFESFAPHLVLLDVNLPKFDG 60 M I I+EDD + LLQ+ L K+G++T V F+ V F P LVLLDVNLPKFDG Sbjct: 1 MSTIMIVEDDPKINQLLQEQLEKYGFQTVNVEHFDRVMEVFTQSRPDLVLLDVNLPKFDG 60 Query: 61 YYWCRQIRGLSTCPILFISAREGKMDQVMALENGADDYITKPFDYEIALAKIKSHLRRAY 120 +YWCRQ+R S CPILFISARE KMDQVMALENGADDYITKPFDY++ LAKI+S LRRAY Sbjct: 61 FYWCRQMRQESNCPILFISARESKMDQVMALENGADDYITKPFDYDVVLAKIRSQLRRAY 120 Query: 121 GSYAGGGTERSLTVAGLMLDVERLVLSRGSAKIDLSHTEAKILDELMQKAGTVVTRDRLL 180 G YA ER++ VAGL L +ER+ LS KI+LS EA +L+ LM + VV+R+RLL Sbjct: 121 GQYAPQEGERTVEVAGLKLFLERMELSMYETKIELSKKEALLLEALMNQHPRVVSRERLL 180 Query: 181 EKIWDDQAFVDDNTLNVYVTRVRKKLAALDIADGLQTVRGQGYRLCENWEEA 232 EK+WD+Q FVD+NTLNVY+TRVR KL L + ++TVRG GYRL WEE Sbjct: 181 EKLWDEQ-FVDENTLNVYITRVRSKLKDLGLEGAVETVRGSGYRLRATWEEG 231 >A9VFZ6.1 A9VFZ6_BACWK Two component transcriptional regulator, winged helix family Length = 234 Score = 279 bits (714), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 128/230 (55%), Positives = 171/230 (74%) Query: 1 MFKIFIIEDDRGLVMLLQDYLHKFGYETQAVHDFEAVRAEFESFAPHLVLLDVNLPKFDG 60 M+KI I+EDD+ + LLQ +++K+GYE DFE + A FE P LVLLDVNLP FDG Sbjct: 1 MYKIMIVEDDQKISKLLQSHINKYGYEGNITEDFENILANFEKIQPDLVLLDVNLPSFDG 60 Query: 61 YYWCRQIRGLSTCPILFISAREGKMDQVMALENGADDYITKPFDYEIALAKIKSHLRRAY 120 +YWCRQIR +STCPI+FISAR G+M+QVMALE+GADDYITKPF YE+ +AKI+SHLRR Y Sbjct: 61 FYWCRQIRTVSTCPIIFISARSGEMEQVMALEHGADDYITKPFHYEVVMAKIRSHLRRIY 120 Query: 121 GSYAGGGTERSLTVAGLMLDVERLVLSRGSAKIDLSHTEAKILDELMQKAGTVVTRDRLL 180 G YA ER + +GL+L E++ L + LS E +L+ L++++ ++V+R+++L Sbjct: 121 GEYAPKAEERVVQQSGLILYPEKMELKLNDSMCILSKKETVLLETLLRQSPSIVSREKIL 180 Query: 181 EKIWDDQAFVDDNTLNVYVTRVRKKLAALDIADGLQTVRGQGYRLCENWE 230 EK+WDD +VDDNTL+V VTRVRKKL + I + L+TVRG GYRL W+ Sbjct: 181 EKLWDDYTYVDDNTLSVNVTRVRKKLEEIGIKNALETVRGAGYRLKITWK 230 >C3A626.1 C3A626_BACMY DNA-binding response regulator Length = 234 Score = 279 bits (714), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 128/230 (55%), Positives = 171/230 (74%) Query: 1 MFKIFIIEDDRGLVMLLQDYLHKFGYETQAVHDFEAVRAEFESFAPHLVLLDVNLPKFDG 60 M+KI I+EDD+ + LLQ +++K+GYE DFE + A FE P LVLLDVNLP FDG Sbjct: 1 MYKIMIVEDDQKISKLLQSHINKYGYEGNITEDFENILANFEKIQPDLVLLDVNLPSFDG 60 Query: 61 YYWCRQIRGLSTCPILFISAREGKMDQVMALENGADDYITKPFDYEIALAKIKSHLRRAY 120 +YWCRQIR +STCPI+FISAR G+M+QVMALE+GADDYITKPF YE+ +AKI+SHLRR Y Sbjct: 61 FYWCRQIRTVSTCPIIFISARSGEMEQVMALEHGADDYITKPFHYEVVMAKIRSHLRRIY 120 Query: 121 GSYAGGGTERSLTVAGLMLDVERLVLSRGSAKIDLSHTEAKILDELMQKAGTVVTRDRLL 180 G YA ER + +GL+L E++ L + LS E +L+ L++++ ++V+R+++L Sbjct: 121 GEYAPKAEERVVQQSGLILYPEKMELKLNDSMCILSKKETVLLETLLRQSPSIVSREKIL 180 Query: 181 EKIWDDQAFVDDNTLNVYVTRVRKKLAALDIADGLQTVRGQGYRLCENWE 230 EK+WDD +VDDNTL+V VTRVRKKL + I + L+TVRG GYRL W+ Sbjct: 181 EKLWDDYTYVDDNTLSVNVTRVRKKLEEIGIKNALETVRGAGYRLKITWK 230 >C2SKG2.1 C2SKG2_BACCE DNA-binding response regulator Length = 234 Score = 276 bits (707), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 127/230 (55%), Positives = 170/230 (73%) Query: 1 MFKIFIIEDDRGLVMLLQDYLHKFGYETQAVHDFEAVRAEFESFAPHLVLLDVNLPKFDG 60 M+KI I+EDD+ + LLQ +++K+ YE DFE + A FE P LVLLDVNLP FDG Sbjct: 1 MYKIMIVEDDQKISKLLQSHINKYEYEGNITEDFENILANFEKIQPDLVLLDVNLPSFDG 60 Query: 61 YYWCRQIRGLSTCPILFISAREGKMDQVMALENGADDYITKPFDYEIALAKIKSHLRRAY 120 +YWCRQIR +STCPI+FISAR G+M+QVMALE+GADDYITKPF YE+ +AKI+SHLRR Y Sbjct: 61 FYWCRQIRTVSTCPIIFISARSGEMEQVMALEHGADDYITKPFHYEVVMAKIRSHLRRIY 120 Query: 121 GSYAGGGTERSLTVAGLMLDVERLVLSRGSAKIDLSHTEAKILDELMQKAGTVVTRDRLL 180 G YA ER + +GL+L E++ L + LS E +L+ L++++ ++V+R+++L Sbjct: 121 GEYAPKAEERVVQQSGLILYPEKMELKLNDSMCILSKKETALLETLLRQSPSIVSREKIL 180 Query: 181 EKIWDDQAFVDDNTLNVYVTRVRKKLAALDIADGLQTVRGQGYRLCENWE 230 EK+WDD +VDDNTL+V VTRVRKKL + I + L+TVRG GYRL W+ Sbjct: 181 EKLWDDYTYVDDNTLSVNVTRVRKKLEEIGIKNALETVRGAGYRLKITWK 230 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,361,478,201 Number of extensions: 53842243 Number of successful extensions: 216988 Number of sequences better than 1.0e-05: 20322 Number of HSP's gapped: 198834 Number of HSP's successfully gapped: 20349 Length of query: 232 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 101 Effective length of database: 1,826,543,238 Effective search space: 184480867038 Effective search space used: 184480867038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)