BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0135.0008.p (324 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K514.1 B3K514_9BACI Sensor protein EC=2.7.13.3 404 e-111 C0ZK70.1 C0ZK70_BREBN Two-component sensor histidine kinase EC=2... 307 1e-81 A9VFZ7.1 A9VFZ7_BACWK Sensor protein EC=2.7.13.3 301 4e-80 C3A627.1 C3A627_BACMY Putative uncharacterized protein 301 4e-80 C2SKG3.1 C2SKG3_BACCE Putative uncharacterized protein 301 4e-80 >B3K514.1 B3K514_9BACI Sensor protein EC=2.7.13.3 Length = 335 Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust. Identities = 200/327 (61%), Positives = 246/327 (75%), Gaps = 4/327 (1%) Query: 1 MKLFLREQTPLIVIYLAQLLMITLVYRLDGGSGMNVSXXXXXXXXXXXXXXXXXRYFSNR 60 M+LFL+EQ PL+++Y+AQLL++TL+YRLDG + VS R+ +NR Sbjct: 1 MRLFLQEQRPLMIVYIAQLLVVTLIYRLDGYRNLTVSLYAGIISLLLLVGYLAFRFIANR 60 Query: 61 SFYERLLN-LPAS--LDDSGGPAQSSPLAESLRGVLAHQFRLYQNDLHSYRHKLEEHIHF 117 SFY+RL LP +S + +PLAE+L +L QFR Y DLH+Y+HK+E H+ F Sbjct: 61 SFYKRLEQPLPGESLTGESSAESSHTPLAEALHQLLKTQFRHYTTDLHNYKHKIEGHLQF 120 Query: 118 INQWVHGMKTPLSVIHLIIQDKDGPPFTAIGDELDRLKKGLDTVLYTARLDTFEHDFYVE 177 INQW H MKTP+SVIHLI+QD D P F AIGDELDRLKKGLD VLYTARLDTFE DF+VE Sbjct: 121 INQWAHQMKTPISVIHLILQDDDDPRFAAIGDELDRLKKGLDLVLYTARLDTFERDFHVE 180 Query: 178 RLELAAIVRGVTSEQKRLFIRKRVFPAIRVENGLFITSDEKWLSFVLTQLITNALRYTVE 237 L L IVR VTSEQKRLFIR+R++P+IR+++GL + +DEKWLSFVLTQL+TNA+RYT++ Sbjct: 181 NLPLQRIVRNVTSEQKRLFIRRRMYPSIRIDSGLTVATDEKWLSFVLTQLLTNAVRYTLK 240 Query: 238 EGRFVHFHGYAGEQGRPVLEVRDEGVGIPPGDLPRVFDAYFTGVNGRSFQESTGMGLYLV 297 E + F+GY E + VLE+RDEG+GIP DLPRVFD YFTG NGR FQESTGMGL+LV Sbjct: 241 EQGTLFFNGYTRE-NQVVLEIRDEGIGIPQSDLPRVFDPYFTGENGRRFQESTGMGLFLV 299 Query: 298 KQICGKLGHQVEISSEVGQGTAVRIIF 324 KQIC KLGH EI S+V +GT VRIIF Sbjct: 300 KQICDKLGHAFEIESKVDEGTTVRIIF 326 >C0ZK70.1 C0ZK70_BREBN Two-component sensor histidine kinase EC=2.7.3.- Length = 338 Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 150/325 (46%), Positives = 215/325 (66%), Gaps = 3/325 (0%) Query: 1 MKLFLREQTPLIVIYLAQLLMITLVYRLDGGSGMNVSXXXXXXXXXXXXXXXXXRYFSNR 60 MKLFLR+Q P +L QL+++ +++ LDG ++ RY S+R Sbjct: 1 MKLFLRDQWPFAAFFLVQLILLIMIFALDGYWNESLMIYVMFLSIFFAGAFLVVRYLSHR 60 Query: 61 SFYERLLNLPASLDDSGGPAQSSPLAESLRGVLAHQFRLYQNDLHSYRHKLEEHIHFINQ 120 + Y+RL SL++ +SPL ++ + Q+RLY+ LH+Y +K +H FI Q Sbjct: 61 TIYQRLSKPVESLEELTQTYGNSPLCRAMDDISQEQYRLYKEQLHAYENKQRDHTTFIQQ 120 Query: 121 WVHGMKTPLSVIHLIIQDKDGPPFTAIGDELDRLKKGLDTVLYTARLDTFEHDFYVERLE 180 WVH MKTP+SVIHL++Q++D P ++ +E+DR+K+GL+TVLY ARLD FE DF +E + Sbjct: 121 WVHQMKTPISVIHLLLQNEDDPTAESVREEVDRIKRGLETVLYIARLDRFEQDFLIEPVT 180 Query: 181 LAAIVRGVTSEQKRLFIRKRVFPAIRVENGLFITSDEKWLSFVLTQLITNALRYTVEEGR 240 L ++V+ V +E KRLFIR +V+P ++V+ + SD+KWL+FVL QL+TNA+RY+ + Sbjct: 181 LRSLVQNVLAENKRLFIRNQVYPEVKVDENWRVESDDKWLAFVLNQLLTNAVRYSAGKSN 240 Query: 241 FVHFHGYAGEQG-RPVLEVRDEGVGIPPGDLPRVFDAYFTGVNGRSFQESTGMGLYLVKQ 299 V Y E+G +LEV+D G+GIP D+ RVF YFTG NGR + ESTGMGLYLVK+ Sbjct: 241 KVTIRAY--ERGAHAILEVQDYGIGIPAEDIHRVFKPYFTGENGRKYPESTGMGLYLVKE 298 Query: 300 ICGKLGHQVEISSEVGQGTAVRIIF 324 ICG+L H VE+ SEVG+GT VRI+ Sbjct: 299 ICGRLHHGVEMESEVGEGTTVRIVL 323 >A9VFZ7.1 A9VFZ7_BACWK Sensor protein EC=2.7.13.3 Length = 328 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 151/324 (46%), Positives = 209/324 (64%), Gaps = 1/324 (0%) Query: 1 MKLFLREQTPLIVIYLAQLLMITLVYRLDGGSGMNVSXXXXXXXXXXXXXXXXXRYFSNR 60 M LFLRE P I + QL ++ VY LDG + ++ + RYFS+R Sbjct: 1 MNLFLREHIPFICFSIIQLFVVLTVYWLDGYNHLSTALYSVFLGGCFLIAFLLYRYFSHR 60 Query: 61 SFYERLLNLPASLDDSGGPAQSSPLAESLRGVLAHQFRLYQNDLHSYRHKLEEHIHFINQ 120 FY +L N +L+DS S+PL+ +L+ VL Q+ Y L ++ +K +EH+ FINQ Sbjct: 61 RFYNKLSNPSETLEDSLEELDSTPLSVALQRVLKTQYSQYHQQLKTWEYKQKEHLTFINQ 120 Query: 121 WVHGMKTPLSVIHLIIQDKDGPPFTAIGDELDRLKKGLDTVLYTARLDTFEHDFYVERLE 180 WVH MKTPLSVI LI Q+++G F +I +E+D+++ GL+ VLY ARL TFE DFYVER+ Sbjct: 121 WVHQMKTPLSVIELITQEENGEVFESIVEEVDQMQYGLEMVLYMARLQTFEQDFYVERVS 180 Query: 181 LAAIVRGVTSEQKRLFIRKRVFPAIRVENGLFITSDEKWLSFVLTQLITNALRYTVEEGR 240 L IV+ V E KRLFIR V+P ++V+ + + +D KWL FV+ Q+I+NA++Y+ + Sbjct: 181 LQEIVQEVIRENKRLFIRSYVYPEVKVKQTIMVETDRKWLRFVIHQVISNAIKYSAGSRK 240 Query: 241 FVHFHGYAGEQGRPVLEVRDEGVGIPPGDLPRVFDAYFTGVNGRSFQESTGMGLYLVKQI 300 V E+ +LE+ D GVGIP DLPRVF ++TG+NGR F+ESTGMGLYLVK I Sbjct: 241 NVTITTLEEERS-VILEIHDHGVGIPKEDLPRVFRPFYTGINGRKFKESTGMGLYLVKNI 299 Query: 301 CGKLGHQVEISSEVGQGTAVRIIF 324 +L H +EI SEVG+GT + IIF Sbjct: 300 IKRLEHDIEIKSEVGKGTTICIIF 323 >C3A627.1 C3A627_BACMY Putative uncharacterized protein Length = 328 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 151/324 (46%), Positives = 209/324 (64%), Gaps = 1/324 (0%) Query: 1 MKLFLREQTPLIVIYLAQLLMITLVYRLDGGSGMNVSXXXXXXXXXXXXXXXXXRYFSNR 60 M LFLRE P I + QL ++ VY LDG + ++ + RYFS+R Sbjct: 1 MNLFLREHIPFICFSIIQLFVVLTVYWLDGYNHLSTALYSVFLGGCFLIAFLLYRYFSHR 60 Query: 61 SFYERLLNLPASLDDSGGPAQSSPLAESLRGVLAHQFRLYQNDLHSYRHKLEEHIHFINQ 120 FY +L N +L+DS S+PL+ +L+ VL Q+ Y L ++ +K +EH+ FINQ Sbjct: 61 RFYNKLSNPSETLEDSLEELDSTPLSVALQRVLKTQYSQYHQQLKTWEYKQKEHLTFINQ 120 Query: 121 WVHGMKTPLSVIHLIIQDKDGPPFTAIGDELDRLKKGLDTVLYTARLDTFEHDFYVERLE 180 WVH MKTPLSVI LI Q+++G F +I +E+D+++ GL+ VLY ARL TFE DFYVER+ Sbjct: 121 WVHQMKTPLSVIELITQEENGEVFESIVEEVDQMQYGLEMVLYMARLQTFEQDFYVERVS 180 Query: 181 LAAIVRGVTSEQKRLFIRKRVFPAIRVENGLFITSDEKWLSFVLTQLITNALRYTVEEGR 240 L IV+ V E KRLFIR V+P ++V+ + + +D KWL FV+ Q+I+NA++Y+ + Sbjct: 181 LQEIVQEVIRENKRLFIRSYVYPEVKVKQTIMVETDRKWLRFVIHQVISNAIKYSAGSRK 240 Query: 241 FVHFHGYAGEQGRPVLEVRDEGVGIPPGDLPRVFDAYFTGVNGRSFQESTGMGLYLVKQI 300 V E+ +LE+ D GVGIP DLPRVF ++TG+NGR F+ESTGMGLYLVK I Sbjct: 241 NVTITTLEEERS-VILEIHDHGVGIPKEDLPRVFRPFYTGINGRKFKESTGMGLYLVKNI 299 Query: 301 CGKLGHQVEISSEVGQGTAVRIIF 324 +L H +EI SEVG+GT + IIF Sbjct: 300 IKRLEHDIEIKSEVGKGTTICIIF 323 >C2SKG3.1 C2SKG3_BACCE Putative uncharacterized protein Length = 328 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 151/324 (46%), Positives = 209/324 (64%), Gaps = 1/324 (0%) Query: 1 MKLFLREQTPLIVIYLAQLLMITLVYRLDGGSGMNVSXXXXXXXXXXXXXXXXXRYFSNR 60 M LFLRE P I + QL ++ VY LDG + ++ + RYFS+R Sbjct: 1 MNLFLREHIPFICFSIIQLFVVLTVYWLDGYNHLSTALYSVFLGGCFLIAFLLYRYFSHR 60 Query: 61 SFYERLLNLPASLDDSGGPAQSSPLAESLRGVLAHQFRLYQNDLHSYRHKLEEHIHFINQ 120 FY +L N +L+DS S+PL+ +L+ VL Q+ Y L ++ +K +EH+ FINQ Sbjct: 61 RFYNKLSNPSETLEDSLEELDSTPLSVALQRVLKTQYSQYHQQLKTWEYKQKEHLTFINQ 120 Query: 121 WVHGMKTPLSVIHLIIQDKDGPPFTAIGDELDRLKKGLDTVLYTARLDTFEHDFYVERLE 180 WVH MKTPLSVI LI Q+++G F +I +E+D+++ GL+ VLY ARL TFE DFYVER+ Sbjct: 121 WVHQMKTPLSVIELITQEENGEVFESIVEEVDQMQYGLEMVLYMARLQTFEQDFYVERVS 180 Query: 181 LAAIVRGVTSEQKRLFIRKRVFPAIRVENGLFITSDEKWLSFVLTQLITNALRYTVEEGR 240 L IV+ V E KRLFIR V+P ++V+ + + +D KWL FV+ Q+I+NA++Y+ + Sbjct: 181 LQEIVQEVIRENKRLFIRSYVYPEVKVKQTIMVETDRKWLRFVIHQVISNAIKYSAGSRK 240 Query: 241 FVHFHGYAGEQGRPVLEVRDEGVGIPPGDLPRVFDAYFTGVNGRSFQESTGMGLYLVKQI 300 V E+ +LE+ D GVGIP DLPRVF ++TG+NGR F+ESTGMGLYLVK I Sbjct: 241 NVTITTLEEERS-VILEIHDHGVGIPKEDLPRVFRPFYTGINGRKFKESTGMGLYLVKNI 299 Query: 301 CGKLGHQVEISSEVGQGTAVRIIF 324 +L H +EI SEVG+GT + IIF Sbjct: 300 IKRLEHDIEIKSEVGKGTTICIIF 323 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.142 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,904,203,706 Number of extensions: 79886410 Number of successful extensions: 229860 Number of sequences better than 1.0e-05: 6754 Number of HSP's gapped: 233562 Number of HSP's successfully gapped: 6761 Length of query: 324 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 188 Effective length of database: 1,779,438,163 Effective search space: 334534374644 Effective search space used: 334534374644 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)