BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0135.0007.p
         (88 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q3F0P3.1 Q3F0P3_BACTI Putative uncharacterized protein                 69   9e-11
C3IWM6.1 C3IWM6_BACTU Putative uncharacterized protein                 69   1e-10

>Q3F0P3.1 Q3F0P3_BACTI Putative uncharacterized protein
          Length = 121

 Score = 69.3 bits (168), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 3/89 (3%)

Query: 1  VMQLLGGMILSLGWIPQIARILKTKSVADXXXXXXXXXXXGIALMEAYAVNL--TLTGAG 58
          ++Q +GG+ILS+G+IPQI +ILKTKSV D           G+  MEAYAV +   +  AG
Sbjct: 9  LLQFIGGIILSVGYIPQIIKILKTKSVQDFSRIYVGGIFTGVLFMEAYAVYMWFVMHTAG 68

Query: 59 LAFLITNTLSLCVVSAVIVLILRYAGRSK 87
           AF+ITNT+SL +      LI  Y  +S 
Sbjct: 69 -AFMITNTISLLLSGLEFFLIFLYYNKSN 96


>C3IWM6.1 C3IWM6_BACTU Putative uncharacterized protein
          Length = 139

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 1   VMQLLGGMILSLGWIPQIARILKTKSVADXXXXXXXXXXXGIALMEAYAVNL--TLTGAG 58
           ++Q +GG+ILS+G+IPQI +ILKTKSV D           G+  MEAYAV +   +  AG
Sbjct: 27  LLQFIGGIILSVGYIPQIIKILKTKSVQDFSRIYVGGIFTGVLFMEAYAVYMWFVMHTAG 86

Query: 59  LAFLITNTLSLCVVSAVIVLILRYAGRSKG 88
            AF+ITNT+SL +      LI  Y  +S  
Sbjct: 87  -AFMITNTISLLLSGLEFFLIFLYYNKSNN 115


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.140    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 364,530,124
Number of extensions: 8307926
Number of successful extensions: 33121
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 33122
Number of HSP's successfully gapped: 2
Length of query: 88
Length of database: 3,060,696,203
Length adjustment: 58
Effective length of query: 30
Effective length of database: 2,514,277,333
Effective search space: 75428319990
Effective search space used: 75428319990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)