BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0135.0006.p
         (127 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A8FDS7.1 A8FDS7_BACP2 MarR family transcriptional regulator           122   1e-26
Q04J20.1 Q04J20_STRP2 Transcriptional regulator, putative              83   8e-15
C1CT13.1 C1CT13_STRZT Transcriptional regulator, putative              83   8e-15
C1CM89.1 C1CM89_STRZP Transcriptional regulator, putative              83   8e-15
C1CFZ4.1 C1CFZ4_STRZJ Transcriptional regulator, putative              83   8e-15

>A8FDS7.1 A8FDS7_BACP2 MarR family transcriptional regulator
          Length = 143

 Score =  122 bits (306), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 75/98 (76%)

Query: 2   KVAGELEAKLQETFGWSLNEFYLMYFLSEAPEKKLRLQQLESMVGLSQSAVSRLVSRFEA 61
           K+  ELE  L+E    SL EFY+MY+LS+  ++KLRLQQL+ ++GLSQSA+SRLV R EA
Sbjct: 22  KIINELETALKEQNNISLKEFYVMYYLSQETDRKLRLQQLQELIGLSQSAMSRLVGRLEA 81

Query: 62  KGCGALQRTTCDDDRRSIYTSLTPIGQEKLDRAQVTVN 99
           K CG+L+R+TC+DD+R IYTSLT  G+E+  RA  T N
Sbjct: 82  KTCGSLERSTCEDDKRGIYTSLTQSGEERFGRALQTFN 119


>Q04J20.1 Q04J20_STRP2 Transcriptional regulator, putative
          Length = 126

 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 60/103 (58%), Gaps = 6/103 (5%)

Query: 6   ELEAKLQETFG------WSLNEFYLMYFLSEAPEKKLRLQQLESMVGLSQSAVSRLVSRF 59
           E+E+ L+ET         +L EFYL+Y+L  A EK LR   L   + LS SAVSR+V+R 
Sbjct: 16  EIESLLEETIAQQSEQSLTLKEFYLLYYLDLAEEKSLRQIDLPDKLHLSPSAVSRMVARL 75

Query: 60  EAKGCGALQRTTCDDDRRSIYTSLTPIGQEKLDRAQVTVNEVL 102
           EAK CG L R  C  DRRS +  LT  GQ+ L   Q TV E L
Sbjct: 76  EAKNCGLLSRMCCHQDRRSSFICLTNDGQKTLASLQKTVEESL 118


>C1CT13.1 C1CT13_STRZT Transcriptional regulator, putative
          Length = 126

 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 60/103 (58%), Gaps = 6/103 (5%)

Query: 6   ELEAKLQETFG------WSLNEFYLMYFLSEAPEKKLRLQQLESMVGLSQSAVSRLVSRF 59
           E+E+ L+ET         +L EFYL+Y+L  A EK LR   L   + LS SAVSR+V+R 
Sbjct: 16  EIESLLEETIAQQSEQSLTLKEFYLLYYLDLAEEKSLRQIDLPDKLHLSPSAVSRMVARL 75

Query: 60  EAKGCGALQRTTCDDDRRSIYTSLTPIGQEKLDRAQVTVNEVL 102
           EAK CG L R  C  DRRS +  LT  GQ+ L   Q TV E L
Sbjct: 76  EAKNCGLLSRMCCHQDRRSSFICLTNDGQKTLASLQKTVEESL 118


>C1CM89.1 C1CM89_STRZP Transcriptional regulator, putative
          Length = 126

 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 60/103 (58%), Gaps = 6/103 (5%)

Query: 6   ELEAKLQETFG------WSLNEFYLMYFLSEAPEKKLRLQQLESMVGLSQSAVSRLVSRF 59
           E+E+ L+ET         +L EFYL+Y+L  A EK LR   L   + LS SAVSR+V+R 
Sbjct: 16  EIESLLEETIAQQSEQSLTLKEFYLLYYLDLAEEKSLRQIDLPDKLHLSPSAVSRMVARL 75

Query: 60  EAKGCGALQRTTCDDDRRSIYTSLTPIGQEKLDRAQVTVNEVL 102
           EAK CG L R  C  DRRS +  LT  GQ+ L   Q TV E L
Sbjct: 76  EAKNCGLLSRMCCHQDRRSSFICLTNDGQKTLASLQKTVEESL 118


>C1CFZ4.1 C1CFZ4_STRZJ Transcriptional regulator, putative
          Length = 126

 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 60/103 (58%), Gaps = 6/103 (5%)

Query: 6   ELEAKLQETFG------WSLNEFYLMYFLSEAPEKKLRLQQLESMVGLSQSAVSRLVSRF 59
           E+E+ L+ET         +L EFYL+Y+L  A EK LR   L   + LS SAVSR+V+R 
Sbjct: 16  EIESLLEETIAQQSEQSLTLKEFYLLYYLDLAEEKSLRQIDLPDKLHLSPSAVSRMVARL 75

Query: 60  EAKGCGALQRTTCDDDRRSIYTSLTPIGQEKLDRAQVTVNEVL 102
           EAK CG L R  C  DRRS +  LT  GQ+ L   Q TV E L
Sbjct: 76  EAKNCGLLSRMCCHQDRRSSFICLTNDGQKTLASLQKTVEESL 118


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 634,687,809
Number of extensions: 19964413
Number of successful extensions: 65963
Number of sequences better than 1.0e-05: 101
Number of HSP's gapped: 66089
Number of HSP's successfully gapped: 101
Length of query: 127
Length of database: 3,060,696,203
Length adjustment: 92
Effective length of query: 35
Effective length of database: 2,193,962,823
Effective search space: 76788698805
Effective search space used: 76788698805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)