BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0135.0005.p (360 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1IA99.1 C1IA99_9CLOT NADH-dependent flavin dehydrogenase 529 e-148 C1P8A1.1 C1P8A1_BACCO NADH:flavin oxidoreductase/NADH oxidase 525 e-147 B1D5Y7.1 B1D5Y7_9BACL NADH:flavin oxidoreductase/NADH oxidase 513 e-143 A8FDS6.1 A8FDS6_BACP2 NADH-dependent flavin dehydrogenase 485 e-135 C0ZJV8.1 C0ZJV8_BREBN NADPH dehydrogenase EC=1.6.99.1 455 e-126 >C1IA99.1 C1IA99_9CLOT NADH-dependent flavin dehydrogenase Length = 347 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 243/343 (70%), Positives = 287/343 (83%) Query: 16 MKDLFTPYALQNLKLKNRVVMPPMCQYSVTDKDGIATDWHYNHYVSRAVGGTGLIIMEMT 75 MKDLFTPY ++ L+LKNR+VMPPMCQYSV +KDGIAT+WHY HYVSRA+GGTGLII+EMT Sbjct: 1 MKDLFTPYKIKGLELKNRIVMPPMCQYSVENKDGIATEWHYMHYVSRAIGGTGLIIVEMT 60 Query: 76 DVDPDGRITDYDLGIWSDEHIPALARIVEACHSYGAKVGIQIAHAGRKAEDAQLPVAPSA 135 DV+PDGRITDYDLG+W D+ I L RI++ CH YGAKV +QIAHAGRKAEDA++PVAPSA Sbjct: 61 DVEPDGRITDYDLGLWCDDQIEPLKRIIDECHKYGAKVAVQIAHAGRKAEDAEIPVAPSA 120 Query: 136 IPFSAEYKTPRELTTEEVKAMVQKFQAGVERAVQAGFDVIELHGAHGYLIHQFHSPLTNK 195 IPF KTPREL+TEEVK M++KF+ V RAV+AGFD IE+HGAHGYLIHQFHSPLTNK Sbjct: 121 IPFDHSSKTPRELSTEEVKKMIEKFRLAVRRAVKAGFDAIEIHGAHGYLIHQFHSPLTNK 180 Query: 196 RTDEYGKDLTLFGREVIQAAKKVMPEGMPLIMRISAQEYVEGGYGIRESLEIGRAYKEAG 255 R+DEYGKDLT FG EVI+AAK MPE MPLIMRIS +EYVEGGYGI + +E+ +AY++AG Sbjct: 181 RSDEYGKDLTKFGSEVIKAAKNEMPEDMPLIMRISGREYVEGGYGIEKGIELAKAYQKAG 240 Query: 256 ADIFHVSXXXXXXXXXXXKPGTHAAYQIPLARAFKQELNVPVIAVGRLDEAVLANAVIGN 315 AD+FH+S +PGTHAAYQ+P A+A K+ LN VIAVG+LDE LANAVIGN Sbjct: 241 ADMFHISAGGEGPIAAAGRPGTHAAYQVPYAKAIKEALNTEVIAVGKLDEPELANAVIGN 300 Query: 316 DEADLVAVGRGMLRNPYWTLEAGVQLGKDAGLPKQYELGFPRS 358 +EADLVA+GR M RNPYW L+A V+L K LPKQY+LGFPR+ Sbjct: 301 EEADLVAIGRAMFRNPYWALQAAVKLNKKTDLPKQYKLGFPRN 343 >C1P8A1.1 C1P8A1_BACCO NADH:flavin oxidoreductase/NADH oxidase Length = 343 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 248/342 (72%), Positives = 283/342 (82%) Query: 16 MKDLFTPYALQNLKLKNRVVMPPMCQYSVTDKDGIATDWHYNHYVSRAVGGTGLIIMEMT 75 M DLFTPY L++L++KNR+VMPPMCQYSV KDG+ATDWHY HYVSRA+GGTGLIIMEMT Sbjct: 1 MNDLFTPYKLKSLEVKNRIVMPPMCQYSVEKKDGVATDWHYVHYVSRAIGGTGLIIMEMT 60 Query: 76 DVDPDGRITDYDLGIWSDEHIPALARIVEACHSYGAKVGIQIAHAGRKAEDAQLPVAPSA 135 DV+PDGRITD DLG+WSDE I LA+IVEACH YGAKVGIQI HAGRKA+DA+ PVAPS Sbjct: 61 DVEPDGRITDNDLGLWSDEQIAPLAKIVEACHQYGAKVGIQIGHAGRKAQDAKQPVAPSP 120 Query: 136 IPFSAEYKTPRELTTEEVKAMVQKFQAGVERAVQAGFDVIELHGAHGYLIHQFHSPLTNK 195 IPF KTPR LT EE+K +V+KF V RAVQAGFD IELHGAHGYLIH+F S TNK Sbjct: 121 IPFDDHAKTPRALTKEEIKEIVRKFGESVRRAVQAGFDTIELHGAHGYLIHEFQSRYTNK 180 Query: 196 RTDEYGKDLTLFGREVIQAAKKVMPEGMPLIMRISAQEYVEGGYGIRESLEIGRAYKEAG 255 R+DEYG+DL LFG+EVI AAK MP MPLIMRISA+EYV+GGYGI ES+ + +AYKEAG Sbjct: 181 RSDEYGQDLALFGKEVIAAAKSEMPADMPLIMRISAREYVDGGYGIEESIALSKAYKEAG 240 Query: 256 ADIFHVSXXXXXXXXXXXKPGTHAAYQIPLARAFKQELNVPVIAVGRLDEAVLANAVIGN 315 D+FH+S +PGTHAAYQ+PLAR K+ LNVPVIAVGRL++ VLANAVIGN Sbjct: 241 VDLFHISSGGEGHIGAAGRPGTHAAYQVPLARQIKEALNVPVIAVGRLEDPVLANAVIGN 300 Query: 316 DEADLVAVGRGMLRNPYWTLEAGVQLGKDAGLPKQYELGFPR 357 +EADLVAVGRGMLRNPYW L AG+ LGKDAG+P QY GFP+ Sbjct: 301 EEADLVAVGRGMLRNPYWALNAGIALGKDAGVPIQYTRGFPK 342 >B1D5Y7.1 B1D5Y7_9BACL NADH:flavin oxidoreductase/NADH oxidase Length = 343 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 242/342 (70%), Positives = 280/342 (81%) Query: 16 MKDLFTPYALQNLKLKNRVVMPPMCQYSVTDKDGIATDWHYNHYVSRAVGGTGLIIMEMT 75 MK LFTPY +++L LKNRVVMPPMCQYSVT K GIA DWHY HYVSRAVGG GLII+EMT Sbjct: 1 MKHLFTPYEIKSLSLKNRVVMPPMCQYSVTAKGGIANDWHYAHYVSRAVGGAGLIIIEMT 60 Query: 76 DVDPDGRITDYDLGIWSDEHIPALARIVEACHSYGAKVGIQIAHAGRKAEDAQLPVAPSA 135 DV+PDGRITDYDLG+WSD+HIPALARIVEA H +GAK+GIQIAHAGRKAEDA+LPVAPSA Sbjct: 61 DVEPDGRITDYDLGLWSDDHIPALARIVEAVHQHGAKIGIQIAHAGRKAEDAELPVAPSA 120 Query: 136 IPFSAEYKTPRELTTEEVKAMVQKFQAGVERAVQAGFDVIELHGAHGYLIHQFHSPLTNK 195 IPF KTPR LTTEE + MV+KF+ V RAVQAG D IE+HGAHGYLIHQF SPLTNK Sbjct: 121 IPFDENSKTPRALTTEEAEQMVEKFRLAVRRAVQAGVDTIEIHGAHGYLIHQFVSPLTNK 180 Query: 196 RTDEYGKDLTLFGREVIQAAKKVMPEGMPLIMRISAQEYVEGGYGIRESLEIGRAYKEAG 255 R D+YG+D TLFG+EVI+AAK MP MPL MRISA+EY EGGYGI ES+ + +KEAG Sbjct: 181 RADKYGQDRTLFGKEVIKAAKSEMPAHMPLFMRISAREYAEGGYGINESIAFAKEFKEAG 240 Query: 256 ADIFHVSXXXXXXXXXXXKPGTHAAYQIPLARAFKQELNVPVIAVGRLDEAVLANAVIGN 315 D+FH+S +PGTHA YQ+PLARA ++ L++PVIAVGRLD+ LAN+VIGN Sbjct: 241 VDVFHISAGGEGQIAAAGRPGTHAGYQVPLARAIREALDIPVIAVGRLDDPALANSVIGN 300 Query: 316 DEADLVAVGRGMLRNPYWTLEAGVQLGKDAGLPKQYELGFPR 357 ++ADLVAVGRGMLRNPYW LEA L K+ +P+QY+ GF R Sbjct: 301 EDADLVAVGRGMLRNPYWALEAASVLHKEIEVPRQYDRGFAR 342 >A8FDS6.1 A8FDS6_BACP2 NADH-dependent flavin dehydrogenase Length = 344 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 222/341 (65%), Positives = 281/341 (82%), Gaps = 2/341 (0%) Query: 17 KDLFTPYALQNLKLKNRVVMPPMCQYSVTDKDGIATDWHYNHYVSRAVGGTGLIIMEMTD 76 +++F P+ L+ L++KNR++M PMCQYSV KDGIATDWHY HYVSRA+GG GL+++EMTD Sbjct: 4 QNIFDPFTLKGLEVKNRIMMSPMCQYSVDKKDGIATDWHYIHYVSRAIGGAGLVMVEMTD 63 Query: 77 VDPDGRITDYDLGIWSDEHIPALARIVEACHSYGAKVGIQIAHAGRKAEDAQLPVAPSAI 136 ++PDGRI++YDLG+WS+E +PAL RIV+ H YGAK IQIAHAGRKAEDA++PVAPSAI Sbjct: 64 IEPDGRISNYDLGLWSEEQVPALQRIVDGIHQYGAKAAIQIAHAGRKAEDAEVPVAPSAI 123 Query: 137 PFSAEYKTPRELTTEEVKAMVQKFQAGVERAVQAGFDVIELHGAHGYLIHQFHSPLTNKR 196 PF KTPRELTT+EV +++KF+ V AV+AGFD IE+HGAHGYLIHQFHSPLTNKR Sbjct: 124 PFDENSKTPRELTTDEVYELIEKFRRSVRLAVKAGFDAIEIHGAHGYLIHQFHSPLTNKR 183 Query: 197 TDEYGKDLTLFGREVIQAAKKVMPEGMPLIMRISAQEYVEGGYGIRESLEIGRAYKEAGA 256 TDE+G+DLT FG E+++AAK+ +P+ MPLIMRISA+EYV+GGY I++++E+ AY +AGA Sbjct: 184 TDEFGQDLTKFGSEILKAAKEEIPDDMPLIMRISAKEYVDGGYNIQDAIELANAYHQAGA 243 Query: 257 DIFHVSXXXXXXXXXXXKPGTHAAYQIPLARAFKQELNVPVIAVGRLDEAVLANAVIGND 316 +IF ++ +PGTHAAYQ+PLAR K+ LNVPVIAVGRLD+ +LANAV+G + Sbjct: 244 EIFDITSGGEGQIPAMNRPGTHAAYQVPLAREIKKALNVPVIAVGRLDDPILANAVVGME 303 Query: 317 EADLVAVGRGMLRNPYWTLEAGVQLGK--DAGLPKQYELGF 355 +ADLVAVGRGMLRNPYW +EA QL K D +PKQYE GF Sbjct: 304 DADLVAVGRGMLRNPYWAMEAAKQLKKSTDELVPKQYEAGF 344 >C0ZJV8.1 C0ZJV8_BREBN NADPH dehydrogenase EC=1.6.99.1 Length = 342 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 224/342 (65%), Positives = 258/342 (75%), Gaps = 2/342 (0%) Query: 16 MKDLFTPYALQNLKLKNRVVMPPMCQYSVTDKDGIATDWHYNHYVSRAVGGTGLIIMEMT 75 M L TP+ + L LKNR+VMPPMCQYSV DG TDWH+ HYVSRAVGGTGLII+EMT Sbjct: 1 MALLSTPFQFKGLSLKNRIVMPPMCQYSVDAHDGTPTDWHFVHYVSRAVGGTGLIIVEMT 60 Query: 76 DVDPDGRITDYDLGIWSDEHIPALARIVEACHSYGAKVGIQIAHAGRKAEDAQLPVAPSA 135 DV+PDGRI++ DLG+WSDE IPA ARIV H YGAK+GIQIAHAGRKAEDA++PV+ SA Sbjct: 61 DVEPDGRISNGDLGLWSDEQIPAYARIVSEVHKYGAKIGIQIAHAGRKAEDAEVPVSSSA 120 Query: 136 IPF-SAEYKTPRELTTEEVKAMVQKFQAGVERAVQAGFDVIELHGAHGYLIHQFHSPLTN 194 I F YKTPR LTTEEVK MV KFQ RAV+AGFD IE+HGAHGYL+HQFHSPLTN Sbjct: 121 IAFPGGRYKTPRALTTEEVKQMVVKFQDSARRAVEAGFDTIEIHGAHGYLVHQFHSPLTN 180 Query: 195 KRTDEYGKDLTLFGREVIQAAKKVMPEGMPLIMRISAQEYVEGGYGIRESLEIGRAYKEA 254 +R DEYG+D LFG E+IQA K+V+P MPLIMR+SA EYV+GGYG+ S E+ R YKEA Sbjct: 181 QRDDEYGRDKALFGVEIIQAIKEVIPADMPLIMRVSAVEYVDGGYGLDYSTELCRRYKEA 240 Query: 255 GADIFHVSXXXXXXXXXXXKPGTHAAYQIPLARAFKQELNVPVIAVGRLDEAVLANAVIG 314 G DIFH+S +PG H YQ+PLARA KQ L+VPVIAVG LD+ +A A IG Sbjct: 241 GVDIFHISSGGEGPIGSAGRPGVHPGYQVPLARAIKQALDVPVIAVGNLDDPQVAEASIG 300 Query: 315 NDEADLVAVGRGMLRNPYWTLEAGVQLGKDA-GLPKQYELGF 355 N + DLVAVGRGMLR+PYW L A +L D PKQY F Sbjct: 301 NGDTDLVAVGRGMLRDPYWALHAIHELSADELQPPKQYSRAF 342 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,116,167,179 Number of extensions: 86872338 Number of successful extensions: 241626 Number of sequences better than 1.0e-05: 3837 Number of HSP's gapped: 230734 Number of HSP's successfully gapped: 3857 Length of query: 360 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 223 Effective length of database: 1,770,017,148 Effective search space: 394713824004 Effective search space used: 394713824004 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)