BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0135.0004.p (256 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K513.1 B3K513_9BACI ABC transporter related 363 9e-99 B7HSC2.1 B7HSC2_BACC7 ABC transporter, ATP-binding protein 335 3e-90 C0ZK71.1 C0ZK71_BREBN ABC transporter ATP-binding protein 335 3e-90 C2QCC3.1 C2QCC3_BACCE ABC transporter ATP-binding protein yxdL 335 3e-90 C2S430.1 C2S430_BACCE ABC transporter ATP-binding protein yxdL 335 3e-90 >B3K513.1 B3K513_9BACI ABC transporter related Length = 256 Score = 363 bits (932), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 176/256 (68%), Positives = 208/256 (81%) Query: 1 LPILDVHNLSKIYEGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDEPTS 60 +PIL V +LSKIYEGKV+ ALN+I F + +GEFVGIMGPSGSGKTTLLN+IATID+PT+ Sbjct: 1 MPILSVKHLSKIYEGKVAFQALNNIHFNISKGEFVGIMGPSGSGKTTLLNLIATIDQPTA 60 Query: 61 GEVMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQEME 120 GEV+I GR+P LGR D ALFRR+ELGFVFQHFNLLDTLTVEEN+VLPLTL G + EM Sbjct: 61 GEVIIAGRNPHLLGRSDTALFRRRELGFVFQHFNLLDTLTVEENIVLPLTLEGMPLDEMG 120 Query: 121 YRLGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKAAGE 180 RL +ADRLGI ++L K T EISGGQMQR AIARA+I PSLILADEPTG+LDS+A+ E Sbjct: 121 TRLNRIADRLGIGSILHKHTYEISGGQMQRTAIARALIQEPSLILADEPTGNLDSRASKE 180 Query: 181 VMNLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNIIDM 240 VM L+ + T+LMVTHD VAAS+C RV+FIKDG+ ++EMY G +R AFFQ IIDM Sbjct: 181 VMQTLSASSKEASATILMVTHDPVAASYCDRVLFIKDGQLYNEMYCGDNRQAFFQKIIDM 240 Query: 241 LSLLGGGGHDLPAVRL 256 L+LLGGG HDL +R Sbjct: 241 LALLGGGSHDLSTIRF 256 >B7HSC2.1 B7HSC2_BACC7 ABC transporter, ATP-binding protein Length = 256 Score = 335 bits (858), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 154/256 (60%), Positives = 204/256 (79%) Query: 1 LPILDVHNLSKIYEGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDEPTS 60 + IL N+SK+Y+GK+ AL I ++++GEF+GIMGPSGSGKTTLLN+++TID PTS Sbjct: 1 MEILHAKNISKVYKGKIPFKALVDIDLSIQEGEFIGIMGPSGSGKTTLLNMVSTIDSPTS 60 Query: 61 GEVMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQEME 120 GE++ING +P L +D ALFRRK+LGFVFQ FNLL TLTV+EN+VLP+TL G +VQEM Sbjct: 61 GEIVINGTNPFQLSSEDLALFRRKQLGFVFQSFNLLSTLTVKENIVLPMTLDGVSVQEMN 120 Query: 121 YRLGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKAAGE 180 R+ E+A++L I +L+KRT EISGGQ QR AIARA++H+P L+LADEPTG+LDSK++ + Sbjct: 121 KRVEEIAEKLNITDILNKRTFEISGGQAQRTAIARAIVHKPQLLLADEPTGNLDSKSSND 180 Query: 181 VMNLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNIIDM 240 VM +L +N E T+++VTHD AASFC RVIFIKDG+ ++E+YRG SR F+Q I+D+ Sbjct: 181 VMEMLDTLNKEEKATMMLVTHDPYAASFCSRVIFIKDGQLYNEIYRGESRQTFYQKIMDV 240 Query: 241 LSLLGGGGHDLPAVRL 256 LSLLGG HD +VR+ Sbjct: 241 LSLLGGKRHDFSSVRI 256 >C0ZK71.1 C0ZK71_BREBN ABC transporter ATP-binding protein Length = 256 Score = 335 bits (858), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 162/256 (63%), Positives = 202/256 (78%) Query: 1 LPILDVHNLSKIYEGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDEPTS 60 + +L V++LSKIY GKV+ AL I F++ +GEFVGIMGPSGSGKTTLLN+I+TID PTS Sbjct: 1 MEMLAVNSLSKIYGGKVTYRALTDIDFSIRKGEFVGIMGPSGSGKTTLLNMISTIDTPTS 60 Query: 61 GEVMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQEME 120 G V++NG +P L + ALFRR+ELGFVFQ FNLLDTLT+ EN+VLPLTL V ME Sbjct: 61 GAVLLNGTNPHHLKKDKLALFRRRELGFVFQDFNLLDTLTIGENIVLPLTLDNEKVAVME 120 Query: 121 YRLGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKAAGE 180 +L VA++LGI+ +L+KRT E+SGGQ QR AIARA+IH PSL+LADEPTG+LDSK++ Sbjct: 121 EKLQSVAEKLGIQDILEKRTFEVSGGQRQRTAIARAIIHSPSLLLADEPTGNLDSKSSRN 180 Query: 181 VMNLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNIIDM 240 VM L +N + TT++MVTHDA+AAS+CHRVIFIKDG+ H+EMYRG SR FFQ IID Sbjct: 181 VMETLEAINKRDNTTMMMVTHDALAASYCHRVIFIKDGQLHNEMYRGESRQVFFQKIIDS 240 Query: 241 LSLLGGGGHDLPAVRL 256 LS LGG +DL +R+ Sbjct: 241 LSFLGGNTYDLSTIRV 256 >C2QCC3.1 C2QCC3_BACCE ABC transporter ATP-binding protein yxdL Length = 277 Score = 335 bits (858), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 155/256 (60%), Positives = 204/256 (79%) Query: 1 LPILDVHNLSKIYEGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDEPTS 60 + IL N+SK+Y+GK+ AL I ++++GEF+GIMGPSGSGKTTLLN+++TID PTS Sbjct: 22 MEILHAKNISKVYKGKIPFKALVDIDLSIQEGEFIGIMGPSGSGKTTLLNMVSTIDSPTS 81 Query: 61 GEVMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQEME 120 GE++ING +P L +D ALFRRK+LGFVFQ FNLL TLTV+EN+VLP+TL G +VQEM Sbjct: 82 GEIVINGTNPFQLSSEDLALFRRKQLGFVFQSFNLLSTLTVKENIVLPMTLDGVSVQEMN 141 Query: 121 YRLGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKAAGE 180 R+ E+A +L I +L+KRT EISGGQ QR AIARA++H+P L+LADEPTG+LDSK++ + Sbjct: 142 KRVEEIAAKLNITDILNKRTFEISGGQAQRTAIARAIVHKPQLLLADEPTGNLDSKSSND 201 Query: 181 VMNLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNIIDM 240 VM +L +N E T+++VTHD AASFC RVIFIKDG+ ++E+YRG SR AF+Q I+D+ Sbjct: 202 VMEMLDTLNKEEKATMMLVTHDPYAASFCSRVIFIKDGQLYNEIYRGESRQAFYQKIMDV 261 Query: 241 LSLLGGGGHDLPAVRL 256 LSLLGG HD +VR+ Sbjct: 262 LSLLGGKRHDFSSVRI 277 >C2S430.1 C2S430_BACCE ABC transporter ATP-binding protein yxdL Length = 266 Score = 335 bits (858), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 154/256 (60%), Positives = 204/256 (79%) Query: 1 LPILDVHNLSKIYEGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDEPTS 60 + IL N+SK+Y+GK+ AL I ++++GEF+GIMGPSGSGKTTLLN+++TID PTS Sbjct: 11 MEILHAKNISKVYKGKIPFKALVDIDLSIQEGEFIGIMGPSGSGKTTLLNMVSTIDSPTS 70 Query: 61 GEVMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQEME 120 GE++ING +P L +D ALFRRK+LGFVFQ FNLL TLTV+EN+VLP+TL G +VQEM Sbjct: 71 GEIVINGTNPFQLSSEDLALFRRKQLGFVFQSFNLLSTLTVKENIVLPMTLDGVSVQEMN 130 Query: 121 YRLGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKAAGE 180 R+ E+A++L I +L+KRT EISGGQ QR AIARA++H+P L+LADEPTG+LDSK++ + Sbjct: 131 KRVEEIAEKLNITDILNKRTFEISGGQAQRTAIARAIVHKPQLLLADEPTGNLDSKSSND 190 Query: 181 VMNLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNIIDM 240 VM +L +N E T+++VTHD AASFC RVIFIKDG+ ++E+YRG SR F+Q I+D+ Sbjct: 191 VMEMLDTLNKEEKATMMLVTHDPYAASFCSRVIFIKDGQLYNEIYRGESRQTFYQKIMDV 250 Query: 241 LSLLGGGGHDLPAVRL 256 LSLLGG HD +VR+ Sbjct: 251 LSLLGGKRHDFSSVRI 266 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,476,482,092 Number of extensions: 59955961 Number of successful extensions: 514589 Number of sequences better than 1.0e-05: 96994 Number of HSP's gapped: 398516 Number of HSP's successfully gapped: 104802 Length of query: 256 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 123 Effective length of database: 1,807,701,208 Effective search space: 222347248584 Effective search space used: 222347248584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)