BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0135.0003.p (649 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K512.1 B3K512_9BACI Putative uncharacterized protein 562 e-158 B5UVH2.1 B5UVH2_BACCE Putative membrane protein 290 3e-76 B5UZE8.1 B5UZE8_BACCE Efflux ABC transporter, permease protein 288 2e-75 B9J1X0.1 B9J1X0_BACCQ Permease, putative domain protein 286 3e-75 B7HSC3.1 B7HSC3_BACC7 Efflux ABC transporter, permease protein 284 2e-74 >B3K512.1 B3K512_9BACI Putative uncharacterized protein Length = 649 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 309/654 (47%), Positives = 407/654 (62%), Gaps = 10/654 (1%) Query: 1 MTFRQFAYRNVARNKRKXXXXXXXXXXXXXXXXLCALFIYHPAISRDMILGTAADTMMAA 60 MTFRQFA+RNV RNKR +CALF++HP+I+ +M M+ A Sbjct: 1 MTFRQFAFRNVLRNKRTYAAYFLSSAFSVMIFFVCALFLFHPSITDEMFYPVVIQAMVGA 60 Query: 61 EGIIYVFCSLFVLVSVGSFLQSRKLEFGILLMHGMTKRQLKLMVFLENMMXXXXXXXXXX 120 E I+YVF FVL SVG+FL++RK EFGIL MHGMT RQ MVFLENM+ Sbjct: 61 ELIMYVFSFFFVLYSVGAFLKTRKREFGILFMHGMTDRQFNKMVFLENMIIGVSAIATGI 120 Query: 121 XXXXXXXXXXXXXXSGFLGIEPLEFHLSWQAPVLTICSFVLLFMLISLLTFAFIGNESPR 180 S FLG+ PL F LS +A LTI S+ LLF++ISL T + ++ Sbjct: 121 LFGIITGKLFLMAGSAFLGVPPLPFRLSLRALGLTIASYALLFLIISLCTSWLLRPKALI 180 Query: 181 GLFRGGGRGEAEPEVSXXXXXXXXXXXXXXXXXXXVTTAATIEIMMFPVVLITICGTYLF 240 LF+ G R + P S T+A+T+ + MFPV L+T+ GTYL Sbjct: 181 DLFQSGQRPKTAPRTSPWLSTLAAVLLLVSYGLAATTSASTLALRMFPVTLMTMIGTYLI 240 Query: 241 YTQLSLYIVGMLRKLRRFYWKHTHILTFAGLSYRWKDNGRMFFMVTIVSAVSFTSVGVFA 300 Y+QL + +V L++ RRF W+ T +++ + L YR KD+ +MF MVTIV AVSF SVGVFA Sbjct: 241 YSQLGVALVRRLKESRRFTWRRTKLISLSSLQYRLKDHAQMFSMVTIVLAVSFCSVGVFA 300 Query: 301 SIHTLSRELKLDYPXXXXXXXXXXXXXSSEKRDLQGITAALERLGLPYETLRIPLKYA-- 358 SI L+++ D+P +SE++ L I LE +P+ETL +KY Sbjct: 301 SIPVLTKQFNEDFPAAIGYLAKTGD--TSEEQHLNEIRQDLESRKIPFETLSFRVKYTDA 358 Query: 359 -AIVSQTGPDHTKQLPLMSYSNYKLALRHAGFSSDEPPLAGNQGLVMIGSQRDRSLTAAR 417 +Q GP L L+++S+YK A+ AG DE P +G + LV+I SQ DR+ T R Sbjct: 359 EPASAQAGPSEIP-LTLIAFSDYKAAVVMAGLPFDEQPPSGEEALVLIASQNDRAYTRNR 417 Query: 418 FKATYTLKQ-GTRIQEIGYTQHVPIAEYLLPELDGRGGGDFSGLVVSDSLYSGIV-PVHQ 475 A+Y L+ G R++EIGY+ HV + EYLLPE+D F GLVVSD +++ + PV Q Sbjct: 418 DYASYRLRDSGIRLREIGYSDHVGVPEYLLPEMDD--DSRFGGLVVSDDIFAAVTDPVRQ 475 Query: 476 DWYTGFYMEDFPRTAGIAPELAATGKVPYEAKSSYAVVISGTLFEIQRTLYSTMLFASLL 535 + YTGFY++DF T GI P LA G V YE ++A+ +SGTLF ++ +LY+ +LFA+LL Sbjct: 476 ERYTGFYVDDFTETEGIVPHLAPGGAVRYEMDRTFALAVSGTLFALRDSLYNMLLFAALL 535 Query: 536 VGTVFFIAAGSFLYFRLYVDLDHDRLQYSTLSKMGLTDRELDRIATLQLALMFFVPVLLA 595 VGTVFFIAAGSFLYFRLY DLD DR Y+T+S++G+TDRE RI T QLAL+FFVP+ LA Sbjct: 536 VGTVFFIAAGSFLYFRLYADLDFDRRHYATISRLGMTDREFRRIVTGQLALLFFVPIGLA 595 Query: 596 VLHSLFAFIALQRMFYLSIAAETGAVLTGYLAAQTLYFFFIRSRYLRNLKKNLI 649 ++HS+FAFIALQ FYLSIAAE G VL +L Q LYFFFIR +YLR LK+ LI Sbjct: 596 IVHSIFAFIALQSYFYLSIAAEMGIVLISFLMMQVLYFFFIRGQYLRKLKQTLI 649 >B5UVH2.1 B5UVH2_BACCE Putative membrane protein Length = 626 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 201/656 (30%), Positives = 320/656 (48%), Gaps = 41/656 (6%) Query: 1 MTFRQFAYRNVARNKRKXXXXXXXXXXXXXXXXLCALFIYHPAISRDMILGTAADTMMAA 60 M R+ AYRNV RN+R + + F +HPA+S + +M A Sbjct: 1 MNIRELAYRNVTRNRRTYSAYFLSSAFAIMAFFVYSFFAFHPALSAGELGQYVFVSMSFA 60 Query: 61 EGIIYVFCSLFVLVSVGSFLQSRKLEFGILLMHGMTKRQLKLMVFLENMMXXXXXXXXXX 120 + IIY+F F+L S+G FL++RK E GIL+M GMTK QLK ++F EN+M Sbjct: 61 QSIIYLFTFFFILYSMGMFLKTRKRELGILMMLGMTKYQLKRLIFFENIMIGIGAIIFGI 120 Query: 121 XXXXXXXXXXXXXXSGFLGIE-PLEFHLSWQAPVLTICSFVLLFMLISLLTFAFIGNESP 179 L ++ L +++ +A V+T F +LFM+ISL + I Sbjct: 121 ISGMLFSGVLLFVAPMILKLDISLSYYIPMKAIVVTSIMFFILFMIISLFSAGMIRKNKI 180 Query: 180 RGLFRGGGRGEAEPEVSXXXXXXXXXXXXXXXXXXXVTTAATIEIMMFPVVLITICGTYL 239 LFRG + EP+ S ++ A + IMM PV + I GTYL Sbjct: 181 MKLFRGSAEAKPEPKASIISSILAVVLLSAGYVGALLSHGAMVFIMMIPVTTVVIIGTYL 240 Query: 240 FYTQLSLYIVGMLRKLRRFYWKHTHILTFAGLSYRWKDNGRMFFMVTIVSAVSFTSVGVF 299 Y QLS++I+ + +K +RFYW T+I+T + L+YR +DN RMFF+VTI+S V+F+++G Sbjct: 241 LYKQLSVFIIRLCKKSKRFYWTQTNIITLSDLAYRMRDNARMFFIVTIISTVAFSAIGTL 300 Query: 300 ASIHTLSRELKLDYPXXXXXXXXXXXXXSSEKRDLQGITAALERLGLPYETLRIPLKYAA 359 ++++ + ++ P S+E + +Q I L++ + I K Sbjct: 301 VGFASMTKGI-MERPIAFHYHSKQGN--SNESQHIQMIDKGLKKHSIAASKTNISTK--- 354 Query: 360 IVSQTGPDHTKQLPLMSYSNYKLALRHAGFSSDEPPLAGNQGLVMIGSQRDRSLTAARFK 419 +T + + S+YK ++A + + N+ +V + + Sbjct: 355 ---KTEEQSLRSATFIKESDYK---KYAKLTGEPFNTVANKEVVFLSANIPGP------- 401 Query: 420 ATYTLKQGTRIQEIGYTQHVPIAEYLLPELDGRGGGDFSGLVVSDSLYSGIVPVHQDWY- 478 T+K+ I +++ + + L G+ V+S++ Y + QD + Sbjct: 402 ---TMKERKEITLPNMNENLKVKKVTSSSLGKILRGNV--YVISNNQYDSL----QDGFI 452 Query: 479 -TGFYMEDFPRTAG---IAPELAATGKVPYEAKSSYAVVISGTLFEIQRTLY--STMLFA 532 T YM RT I EL K PY+ S++ S +E ++L +LF Sbjct: 453 ETKDYMYKTERTKDEIEIGKELTHQIK-PYQEYSTF----SAEEYEQNQSLQIAGPILFV 507 Query: 533 SLLVGTVFFIAAGSFLYFRLYVDLDHDRLQYSTLSKMGLTDRELDRIATLQLALMFFVPV 592 +G VFF+ AGSFLYFRL+ DL+ D + + K+GLT REL ++ T++LAL+FFVP+ Sbjct: 508 GFFIGIVFFVCAGSFLYFRLFSDLEDDVRLFEMIRKVGLTSRELSKVVTIRLALLFFVPI 567 Query: 593 LLAVLHSLFAFIALQRMFYLSIAAETGAVLTGYLAAQTLYFFFIRSRYLRNLKKNL 648 +A LH A AL +MF S+ E VL+ ++ Q +YF IRSRY++ LK+ L Sbjct: 568 GVATLHGAVALTALGQMFEYSLFKENTVVLSIFIGIQVVYFLLIRSRYVKQLKERL 623 >B5UZE8.1 B5UZE8_BACCE Efflux ABC transporter, permease protein Length = 643 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 210/668 (31%), Positives = 326/668 (48%), Gaps = 47/668 (7%) Query: 1 MTFRQFAYRNVARNKRKXXXXXXXXXXXXXXXXLCALFIYHPAISRDMILGTAADTM--- 57 MTFRQFA+ N+ RNKR AL ++HP + + L + + T+ Sbjct: 1 MTFRQFAFNNIFRNKRTYAAHFLSSAFSIMIFFTYALLLFHPDLQGE--LKSTSKTISTF 58 Query: 58 -----MAAEGIIYVFCSLFVLVSVGSFLQSRKLEFGILLMHGMTKRQLKLMVFLENMMXX 112 ++G+I+VF F+L SV SFL++RK EFGIL+M GM+ RQLK ++ +ENM+ Sbjct: 59 GTLGFQISQGLIFVFSFFFILYSVSSFLKTRKKEFGILMMQGMSMRQLKKLLLIENMLIG 118 Query: 113 XXXXXXXXXXXXXXXXXXXXXXSGFLGIEP-LEFHLSWQAPVLTICSFVLLFMLISLLTF 171 + L I L F++ QA +LT+ +F++LF+++SL+TF Sbjct: 119 LGSICIGILIGLIFSKLVLLISASVLMISNGLPFYIPVQAVLLTVFTFLVLFLIVSLVTF 178 Query: 172 AFIGNESPRGLFRGGGRGEAEPEVSXXXXXXXXXXXXXXXXXXXVTTAATIEIMMFPVVL 231 + L + G + + EP+ S M+ VL Sbjct: 179 KTVKVTELVELIQAGEKPKPEPKASIILSLLSLISIGYGYISVFGFIQNHSFTMLVMGVL 238 Query: 232 ITICGTYLFYTQLSLYIVGMLRKLRRFYWKHTHILTFAGLSYRWKDNGRMFFMVTIVSAV 291 + I GTY YTQ S+YI+ ++++ F+ K T+ILTF+ L YR KDN MFF+V+I+SAV Sbjct: 239 LVIIGTYFLYTQCSVYILHLVKRSEFFFLKRTNILTFSELIYRMKDNATMFFIVSIISAV 298 Query: 292 SFTSVGVFASIHTLSREL-KLDYPXXXXXXXXXXXXXSSEKRDLQGITAALERLGLPYET 350 +FT++G A+I ++EL ++ P + L I L +PY T Sbjct: 299 AFTAIGTTAAIG--NKELVRMTNPYTFLYIGPEKDKVVD--KHLSIIKKHLADANIPYRT 354 Query: 351 LRIPLKYAAIVSQTGPDHTKQLPLMSYSNYKLALRHAGFSSDEPPLAGNQGLVMIGSQRD 410 KY + +M S Y R G+ + L+ + Sbjct: 355 ASSSYKYTE----------SNVYVMKLSEYNELARALGYQQEMIEKEDEMLLIPGMVSQK 404 Query: 411 RSLTAARFKATYTLKQGTRIQEIGYTQHVPIAEYLLPELDGRGGGDFSGL--VVSDSLYS 468 + +K + QG I+ + V +LP D SG+ V D +Y Sbjct: 405 QEFKNGDYKKNIEVIQGDWIKTFRVKKAVE--NLVLPH-------DTSGIFIAVQDRVYD 455 Query: 469 GIVP--------VHQDWYTGFYMEDFPRTAGIAPELAATGKVPYEAKSSYAVVISGTLFE 520 GI P V QD GF ++D+ +T I+ +L + + Y ++ +L E Sbjct: 456 GI-PFNINQDDVVIQDRTYGFVVDDWIKTKEISNQLNSIFNADAREDNFYFQALTLSLLE 514 Query: 521 IQRTLYSTMLFASLLVGTVFFIAAGSFLYFRLYVDLDHDRLQYSTLSKMGLTDRELDRIA 580 ++T +L AS+LVG VFF A SF+YFRLY DLD D+ QY +SKMGL+ REL ++ Sbjct: 515 AKQT-NGLLLMASVLVGIVFFTFAASFIYFRLYTDLDRDQQQYKMISKMGLSKRELKKVV 573 Query: 581 TLQLALMFFVPVLLAVLHSLFAFIALQRMFYLSIAAETGAVLTGYLAAQTLYFFFIRSRY 640 T QL LMFF+P+++AV+H++ A++ALQ++ SI + +L ++ Q LYF+ R RY Sbjct: 574 TRQLLLMFFLPIIIAVIHTVVAYMALQQLVDFSILNSSIVILISFICIQVLYFYITRWRY 633 Query: 641 LRNLKKNL 648 L+ L K + Sbjct: 634 LQKLYKTM 641 >B9J1X0.1 B9J1X0_BACCQ Permease, putative domain protein Length = 643 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 208/667 (31%), Positives = 325/667 (48%), Gaps = 45/667 (6%) Query: 1 MTFRQFAYRNVARNKRKXXXXXXXXXXXXXXXXLCALFIYHPAISRDMILGTAADTM--- 57 MTFRQFA+ N+ RNKR AL ++HP + + L + + T+ Sbjct: 1 MTFRQFAFNNIFRNKRTYAAHFLSSAFSIMIFFTYALLLFHPDLQGE--LKSTSKTISTF 58 Query: 58 -----MAAEGIIYVFCSLFVLVSVGSFLQSRKLEFGILLMHGMTKRQLKLMVFLENMMXX 112 ++G+I+VF F+L SV SFL++RK EFGIL+M GM+ RQLK ++ +ENM+ Sbjct: 59 GTLGFQISQGLIFVFSFFFILYSVSSFLKTRKKEFGILMMQGMSMRQLKQLLLIENMLIG 118 Query: 113 XXXXXXXXXXXXXXXXXXXXXXSGFLGIEP-LEFHLSWQAPVLTICSFVLLFMLISLLTF 171 + L I L F++ QA +LT+ +F++LF+++SL+TF Sbjct: 119 LGSICIGILIGLIFSKLVLLISASVLMISNGLPFYIPVQAVLLTVFTFLVLFLIVSLVTF 178 Query: 172 AFIGNESPRGLFRGGGRGEAEPEVSXXXXXXXXXXXXXXXXXXXVTTAATIEIMMFPVVL 231 + L + G + + EP+ S IM+ VL Sbjct: 179 KTVKVTELVELIQAGEKPKPEPKASIVLSLLSLISIGYGYISVFRFIQNHSFIMLVMGVL 238 Query: 232 ITICGTYLFYTQLSLYIVGMLRKLRRFYWKHTHILTFAGLSYRWKDNGRMFFMVTIVSAV 291 + I GTY YTQ S+YI+ + ++ F+ K T+ILTF+ L YR KDN MFF+V+I+SAV Sbjct: 239 LVIIGTYFLYTQCSVYILHLAKRSEFFFLKRTNILTFSELIYRMKDNATMFFIVSIISAV 298 Query: 292 SFTSVGVFASIHTLSREL-KLDYPXXXXXXXXXXXXXSSEKRDLQGITAALERLGLPYET 350 +FT++G A+I ++EL ++ P + L I L +PY T Sbjct: 299 AFTAIGTTAAIG--NKELVRMTNPYTFLYIGPEKDKVVD--KHLSIIKKHLADANIPYRT 354 Query: 351 LRIPLKYAAIVSQTGPDHTKQLPLMSYSNYKLALRHAGFSSDEPPLAGNQGLVMIGSQRD 410 KY + +M S Y R G+ + L+ + Sbjct: 355 ASSSYKYTE----------SNVYVMKLSEYNELARALGYQQETIEKEDEILLIPGMVSQK 404 Query: 411 RSLTAARFKATYTLKQGTRIQEIGYTQHVPIAEYLLPELDGRGGGDFSGL--VVSDSLYS 468 + +K + +G I+ + V +LP D SG+ V D +Y Sbjct: 405 QEFKNGDYKKNIEVIEGDWIKTFRVKKAVE--NLVLPH-------DTSGIFIAVQDRVYD 455 Query: 469 GI-VPVHQDWYT------GFYMEDFPRTAGIAPELAATGKVPYEAKSSYAVVISGTLFEI 521 GI ++QD GF ++D+ +T I+ +L + + Y ++ +L E Sbjct: 456 GIPFNINQDDVVIQHRTYGFVVDDWIKTKEISNQLNSIFNADGREGNFYFQALTLSLLEA 515 Query: 522 QRTLYSTMLFASLLVGTVFFIAAGSFLYFRLYVDLDHDRLQYSTLSKMGLTDRELDRIAT 581 ++T +L AS+LVG VFF A SF+YFRLY DLD D+ QY +SKMGL+ REL ++ T Sbjct: 516 KQT-NGLLLMASVLVGIVFFTFAASFIYFRLYTDLDRDQQQYKMISKMGLSKRELKKVVT 574 Query: 582 LQLALMFFVPVLLAVLHSLFAFIALQRMFYLSIAAETGAVLTGYLAAQTLYFFFIRSRYL 641 QL LMFF+P+ +AV+H++ A++ALQ++ SI + +L ++ Q LYF+ R RYL Sbjct: 575 RQLLLMFFLPITIAVIHTVVAYMALQQLVDFSILNSSIVILISFICIQVLYFYITRWRYL 634 Query: 642 RNLKKNL 648 + L K + Sbjct: 635 QKLYKTM 641 >B7HSC3.1 B7HSC3_BACC7 Efflux ABC transporter, permease protein Length = 643 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 208/667 (31%), Positives = 325/667 (48%), Gaps = 45/667 (6%) Query: 1 MTFRQFAYRNVARNKRKXXXXXXXXXXXXXXXXLCALFIYHPAISRDMILGTAADTM--- 57 MTFRQFA+ N+ RNKR AL ++HP + + L + + T+ Sbjct: 1 MTFRQFAFNNIFRNKRTYAAHFLSSAFSIMIFFTYALLLFHPDLQGE--LKSTSKTISTF 58 Query: 58 -----MAAEGIIYVFCSLFVLVSVGSFLQSRKLEFGILLMHGMTKRQLKLMVFLENMMXX 112 ++G+I+VF F+L SV SFL++RK EFGIL+M GM+ RQLK ++ +ENM+ Sbjct: 59 GTLGFQISQGLIFVFSFFFILYSVSSFLKTRKKEFGILMMQGMSMRQLKQLLLIENMLIG 118 Query: 113 XXXXXXXXXXXXXXXXXXXXXXSGFLGIEP-LEFHLSWQAPVLTICSFVLLFMLISLLTF 171 + L I L F++ QA +LT+ +F++LF+++SL+TF Sbjct: 119 LGSICIGILIGLIFSKLVLLISASVLMISNGLPFYIPVQAVLLTVFTFLVLFLIVSLVTF 178 Query: 172 AFIGNESPRGLFRGGGRGEAEPEVSXXXXXXXXXXXXXXXXXXXVTTAATIEIMMFPVVL 231 + L + G + + EP+ S IM+ VL Sbjct: 179 KTVKVTELVELIQAGEKPKPEPKASIILSLLSLISIGYGYISVFRFIQNHSFIMLVMGVL 238 Query: 232 ITICGTYLFYTQLSLYIVGMLRKLRRFYWKHTHILTFAGLSYRWKDNGRMFFMVTIVSAV 291 + I GTY YTQ S+YI+ + ++ F+ K T+ILTF+ L YR KDN MFF+V+I+SAV Sbjct: 239 LVIIGTYFLYTQCSVYILHLAKRSEFFFLKRTNILTFSELIYRMKDNATMFFIVSIISAV 298 Query: 292 SFTSVGVFASIHTLSREL-KLDYPXXXXXXXXXXXXXSSEKRDLQGITAALERLGLPYET 350 +FT++G A+I ++EL ++ P + L I L +PY T Sbjct: 299 AFTAIGTTAAIG--NKELVRMTNPYTFLYIGPEKDKVVD--KHLSIIKKHLADANIPYRT 354 Query: 351 LRIPLKYAAIVSQTGPDHTKQLPLMSYSNYKLALRHAGFSSDEPPLAGNQGLVMIGSQRD 410 KY + +M S Y R G+ + L+ + Sbjct: 355 ASSSYKYTE----------SNVYVMKLSEYNELARALGYQQETIEKEDEILLIPGMVSQK 404 Query: 411 RSLTAARFKATYTLKQGTRIQEIGYTQHVPIAEYLLPELDGRGGGDFSGL--VVSDSLYS 468 + +K + +G I+ + V +LP D SG+ V D +Y Sbjct: 405 QEFKNGDYKKNIEVIEGDWIKTFRVKKAVE--NLVLPH-------DTSGIFIAVQDRVYD 455 Query: 469 GI-VPVHQDWYT------GFYMEDFPRTAGIAPELAATGKVPYEAKSSYAVVISGTLFEI 521 GI ++QD GF ++D+ +T I+ +L + + Y ++ +L E Sbjct: 456 GIPFNINQDDVVIQHRTYGFVVDDWIKTKEISNQLNSIFNADAREGNFYFQALTLSLLEA 515 Query: 522 QRTLYSTMLFASLLVGTVFFIAAGSFLYFRLYVDLDHDRLQYSTLSKMGLTDRELDRIAT 581 ++T +L AS+LVG VFF A SF+YFRLY DLD D+ QY +SKMGL+ REL ++ T Sbjct: 516 KQT-NGLLLMASVLVGIVFFTFAASFIYFRLYTDLDRDQQQYKMISKMGLSKRELKKVVT 574 Query: 582 LQLALMFFVPVLLAVLHSLFAFIALQRMFYLSIAAETGAVLTGYLAAQTLYFFFIRSRYL 641 QL LMFF+P+ +AV+H++ A++ALQ++ SI + +L ++ Q LYF+ R RYL Sbjct: 575 RQLLLMFFLPITIAVIHTVVAYMALQQLVDFSILNSSIVILISFICIQVLYFYITRWRYL 634 Query: 642 RNLKKNL 648 + L K + Sbjct: 635 QKLYKTM 641 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.141 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,176,081,572 Number of extensions: 120913373 Number of successful extensions: 361542 Number of sequences better than 1.0e-05: 858 Number of HSP's gapped: 360006 Number of HSP's successfully gapped: 1512 Length of query: 649 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 507 Effective length of database: 1,722,912,073 Effective search space: 873516421011 Effective search space used: 873516421011 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 135 (56.6 bits)