BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0135.0001.p (289 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5D3Y4.1 C5D3Y4_9BACI Undecaprenol kinase EC=3.6.1.27 446 e-124 B3K510.1 B3K510_9BACI Undecaprenol kinase EC=3.6.1.27 441 e-122 B4BRG5.1 B4BRG5_9BACI Undecaprenol kinase EC=3.6.1.27 417 e-115 A4IJS3.1 UPPP_GEOTN Undecaprenyl-diphosphatase EC=3.6.1.27 416 e-114 C3J475.1 C3J475_9BACI Undecaprenol kinase EC=3.6.1.27 409 e-112 >C5D3Y4.1 C5D3Y4_9BACI Undecaprenol kinase EC=3.6.1.27 Length = 273 Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust. Identities = 224/286 (78%), Positives = 255/286 (89%), Gaps = 13/286 (4%) Query: 1 MELLTIIKAIILGIVEGLTEFAPVSSTGHMIIVDDMWLKSQEFLGKYAANTFKVVIQLGS 60 M+++ IIKAIILG+VEGLTEFAPVSSTGHMIIVDDMWLKSQEFLGKYAANTFKVVIQLGS Sbjct: 1 MDIVEIIKAIILGMVEGLTEFAPVSSTGHMIIVDDMWLKSQEFLGKYAANTFKVVIQLGS 60 Query: 61 ILAVVVIFRNRFIDLLGLKRFSRKELTAVPEGQPAVETTGRLKLAQVIVGLIPAGVLGFL 120 ILAVVV+F++RFIDLLGL+ R +G+P RLKL QVIVGLIPAGVLG L Sbjct: 61 ILAVVVVFKDRFIDLLGLRGRHR-------DGKP------RLKLMQVIVGLIPAGVLGVL 107 Query: 121 FEDYIDEHLFSTSTVLIGLVVGAILMICADLLAPKKIKTESVDQITYRQALSVGLIQCLS 180 FEDYIDEHLFST+TVLIGLV+GA+LMI AD+ A K K ++VDQITY+QAL VGL+QCLS Sbjct: 108 FEDYIDEHLFSTATVLIGLVLGALLMIAADVFAKKAPKAQTVDQITYKQALIVGLVQCLS 167 Query: 181 LWPGFSRSGSTISGGVLLGMSHRAAADFTFIMAVPIMAGASLISLLKNWQYFTLDDLPFF 240 LWPGFSRSGSTISGGVL+GMSHRAAADFTFIMAVPIM GAS++SLLKNWQYFT+D LPFF Sbjct: 168 LWPGFSRSGSTISGGVLVGMSHRAAADFTFIMAVPIMMGASVLSLLKNWQYFTIDALPFF 227 Query: 241 IAGFISAFLFALLSMRFFLKLINRIKLMPFAIYRIILAAVVYFVWF 286 AGFISAFLFAL+S+RFFLKLIN+I+L+PFA+YRI+LA V+Y V+F Sbjct: 228 TAGFISAFLFALISIRFFLKLINQIRLVPFAVYRIVLALVIYIVYF 273 >B3K510.1 B3K510_9BACI Undecaprenol kinase EC=3.6.1.27 Length = 280 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 224/287 (78%), Positives = 253/287 (88%), Gaps = 9/287 (3%) Query: 1 MELLTIIKAIILGIVEGLTEFAPVSSTGHMIIVDDMWLKSQEFLGKYAANTFKVVIQLGS 60 M+ LTI+KAIILGIVEGLTEFAPVSSTGHMIIVDDMWLKS+EFL KY ANTFKVVIQLGS Sbjct: 1 MDFLTILKAIILGIVEGLTEFAPVSSTGHMIIVDDMWLKSEEFLTKYVANTFKVVIQLGS 60 Query: 61 ILAVVVIFRNRFIDLLGLKRFSRKELTAVPEGQPAVETTGRLKLAQVIVGLIPAGVLGFL 120 ILAV+V+F++RF+DLLGLKR +K VP G TGRL+L+QVIVGLIPAGVLG L Sbjct: 61 ILAVIVVFKDRFLDLLGLKR--KKPEAGVPAG------TGRLRLSQVIVGLIPAGVLGVL 112 Query: 121 FEDYIDEHLFSTSTVLIGLVVGAILMICADLLAPKK-IKTESVDQITYRQALSVGLIQCL 179 FED IDEHLFST TVLIGLV+GAI MI AD ++ KK K +VDQITYRQA SVGLIQCL Sbjct: 113 FEDLIDEHLFSTETVLIGLVIGAIFMIVADKVSSKKEPKVVTVDQITYRQAFSVGLIQCL 172 Query: 180 SLWPGFSRSGSTISGGVLLGMSHRAAADFTFIMAVPIMAGASLISLLKNWQYFTLDDLPF 239 SLWPGFSRSGSTISGGV+LGMSHRAAADFTFIMAVPIM GAS +SLLKNW+YFTL+ LPF Sbjct: 173 SLWPGFSRSGSTISGGVMLGMSHRAAADFTFIMAVPIMFGASFLSLLKNWEYFTLEALPF 232 Query: 240 FIAGFISAFLFALLSMRFFLKLINRIKLMPFAIYRIILAAVVYFVWF 286 FIAGF++AF+FAL+S+RFFLKLINRIKL+PFAIYRI+LAA++ V + Sbjct: 233 FIAGFVAAFVFALISIRFFLKLINRIKLVPFAIYRIVLAAIIALVLY 279 >B4BRG5.1 B4BRG5_9BACI Undecaprenol kinase EC=3.6.1.27 Length = 273 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 207/286 (72%), Positives = 246/286 (86%), Gaps = 13/286 (4%) Query: 1 MELLTIIKAIILGIVEGLTEFAPVSSTGHMIIVDDMWLKSQEFLGKYAANTFKVVIQLGS 60 M+ + ++KA+ILG+VEGLTEFAPVSSTGHMIIVDD+WLKS EFLGKYAANTFKVVIQLGS Sbjct: 1 MDWMELLKAVILGMVEGLTEFAPVSSTGHMIIVDDLWLKSTEFLGKYAANTFKVVIQLGS 60 Query: 61 ILAVVVIFRNRFIDLLGLKRFSRKELTAVPEGQPAVETTGRLKLAQVIVGLIPAGVLGFL 120 ILA VV+F++RF+DLLG++ R P G+P RL L VI+GL+PAGVLG L Sbjct: 61 ILAAVVVFKDRFLDLLGIR--GRH-----PGGKP------RLTLLHVIIGLLPAGVLGVL 107 Query: 121 FEDYIDEHLFSTSTVLIGLVVGAILMICADLLAPKKIKTESVDQITYRQALSVGLIQCLS 180 FEDYIDEHLFST TVLIGLV+GA+LMI AD A K + ++VDQITY+QA VGL+QCLS Sbjct: 108 FEDYIDEHLFSTKTVLIGLVLGALLMIVADRFAKKAARAQTVDQITYKQAFLVGLVQCLS 167 Query: 181 LWPGFSRSGSTISGGVLLGMSHRAAADFTFIMAVPIMAGASLISLLKNWQYFTLDDLPFF 240 LWPGFSRSGSTI+GGVL+GMSHRAAADFTFIMAVPIMAGAS +SLLKNWQY T+ D+PFF Sbjct: 168 LWPGFSRSGSTIAGGVLVGMSHRAAADFTFIMAVPIMAGASGLSLLKNWQYVTVADIPFF 227 Query: 241 IAGFISAFLFALLSMRFFLKLINRIKLMPFAIYRIILAAVVYFVWF 286 IAGF+SAF+FALL++RFFL LINRI+L+PFA+YRI LA ++YF++F Sbjct: 228 IAGFLSAFVFALLAIRFFLHLINRIRLVPFAVYRIALAFIIYFLYF 273 >A4IJS3.1 UPPP_GEOTN Undecaprenyl-diphosphatase EC=3.6.1.27 Length = 273 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 206/286 (72%), Positives = 246/286 (86%), Gaps = 13/286 (4%) Query: 1 MELLTIIKAIILGIVEGLTEFAPVSSTGHMIIVDDMWLKSQEFLGKYAANTFKVVIQLGS 60 M+ + ++KA+ILG+VEGLTEFAPVSSTGHMIIVDD+WLKS EFLGKYAANTFKVVIQLGS Sbjct: 1 MDWMELLKAVILGMVEGLTEFAPVSSTGHMIIVDDLWLKSTEFLGKYAANTFKVVIQLGS 60 Query: 61 ILAVVVIFRNRFIDLLGLKRFSRKELTAVPEGQPAVETTGRLKLAQVIVGLIPAGVLGFL 120 ILA VV+F++RF++LLG++ R P G+P RL L VI+GL+PAGVLG L Sbjct: 61 ILAAVVVFKDRFLELLGIR--GRH-----PGGKP------RLTLLHVIIGLLPAGVLGVL 107 Query: 121 FEDYIDEHLFSTSTVLIGLVVGAILMICADLLAPKKIKTESVDQITYRQALSVGLIQCLS 180 FEDYIDEHLFST TVLIGLV+GA+LMI AD A K + ++VDQITY+QA VGL+QCLS Sbjct: 108 FEDYIDEHLFSTKTVLIGLVLGALLMIVADRFAKKAARAQTVDQITYKQAFLVGLVQCLS 167 Query: 181 LWPGFSRSGSTISGGVLLGMSHRAAADFTFIMAVPIMAGASLISLLKNWQYFTLDDLPFF 240 LWPGFSRSGSTI+GGVL+GMSHRAAADFTFIMAVPIMAGAS +SLLKNWQY T+ D+PFF Sbjct: 168 LWPGFSRSGSTIAGGVLVGMSHRAAADFTFIMAVPIMAGASGLSLLKNWQYVTVADIPFF 227 Query: 241 IAGFISAFLFALLSMRFFLKLINRIKLMPFAIYRIILAAVVYFVWF 286 IAGF+SAF+FALL++RFFL LINRI+L+PFA+YRI LA ++YF++F Sbjct: 228 IAGFLSAFVFALLAIRFFLHLINRIRLVPFAVYRIALAFIIYFLYF 273 >C3J475.1 C3J475_9BACI Undecaprenol kinase EC=3.6.1.27 Length = 273 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/286 (73%), Positives = 244/286 (85%), Gaps = 13/286 (4%) Query: 1 MELLTIIKAIILGIVEGLTEFAPVSSTGHMIIVDDMWLKSQEFLGKYAANTFKVVIQLGS 60 M + + KAIILG+VEGLTEFAPVSSTGHMIIVDD+WLKS EFLGKYAANTFKVVIQLGS Sbjct: 1 MHWMELWKAIILGMVEGLTEFAPVSSTGHMIIVDDLWLKSTEFLGKYAANTFKVVIQLGS 60 Query: 61 ILAVVVIFRNRFIDLLGLKRFSRKELTAVPEGQPAVETTGRLKLAQVIVGLIPAGVLGFL 120 ILA VV+F++RF+DLLG++ R P G P RL L VI+GL+PAGVLG L Sbjct: 61 ILAAVVVFKDRFLDLLGVR--GRH-----PGGHP------RLNLIHVIIGLLPAGVLGVL 107 Query: 121 FEDYIDEHLFSTSTVLIGLVVGAILMICADLLAPKKIKTESVDQITYRQALSVGLIQCLS 180 FEDYIDEHLFST TVLIGLV+GA+LMI AD A K +T++VDQITY+QA VGL+QCLS Sbjct: 108 FEDYIDEHLFSTKTVLIGLVLGALLMIAADKFAKKAARTQTVDQITYKQAFFVGLMQCLS 167 Query: 181 LWPGFSRSGSTISGGVLLGMSHRAAADFTFIMAVPIMAGASLISLLKNWQYFTLDDLPFF 240 LWPGFSRSGSTISGGVL+GMSHRAAADFTFIMAVPIMAGAS +SLLKNWQY T D+PFF Sbjct: 168 LWPGFSRSGSTISGGVLVGMSHRAAADFTFIMAVPIMAGASGLSLLKNWQYVTAADIPFF 227 Query: 241 IAGFISAFLFALLSMRFFLKLINRIKLMPFAIYRIILAAVVYFVWF 286 IAGF SAF+FALL++RFFL+LINRI+L+PFA+YRI+LA V+YF++F Sbjct: 228 IAGFFSAFVFALLAIRFFLELINRIRLVPFAVYRIVLAVVIYFLYF 273 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.144 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,590,128,645 Number of extensions: 63517583 Number of successful extensions: 297927 Number of sequences better than 1.0e-05: 1660 Number of HSP's gapped: 292997 Number of HSP's successfully gapped: 1671 Length of query: 289 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 155 Effective length of database: 1,798,280,193 Effective search space: 278733429915 Effective search space used: 278733429915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)