BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0040.p
         (86 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2B889.1 Q2B889_9BACI Putative uncharacterized protein                 61   3e-08
B8FYI1.1 B8FYI1_DESHD Collagen triple helix repeat protein             60   8e-08
Q24PD9.1 Q24PD9_DESHY Putative uncharacterized protein                 59   1e-07
Q24P15.1 Q24P15_DESHY Putative uncharacterized protein                 57   5e-07
B8FX64.1 B8FX64_DESHD Collagen triple helix repeat protein             57   5e-07

>Q2B889.1 Q2B889_9BACI Putative uncharacterized protein
          Length = 118

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 1   VVTNNYFADLDAFEFIITTASPSPADDPVQVSLWGKSSTGQLVTAHRLVSAELLGE 56
           V T NYF ++DAFE++ TT+ P+ A    Q+SLWG+S+ G +    RLVS E+LG+
Sbjct: 64  VATRNYFGNVDAFEYVFTTSGPAEAS--TQISLWGRSAAGAITFTQRLVSDEILGQ 117


>B8FYI1.1 B8FYI1_DESHD Collagen triple helix repeat protein
          Length = 380

 Score = 59.7 bits (143), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 5/53 (9%)

Query: 1   VVTNNYFADLDAFEFIITTASPSPADDPVQVSLWGKSSTGQLVTAHRLVSAEL 53
           V+T  YFADLDAFEF+ +T+S     + V +S+WGK + G LV AHR++ AEL
Sbjct: 64  VITREYFADLDAFEFVFSTSS-----ETVAISVWGKDAEGNLVDAHRVLPAEL 111


>Q24PD9.1 Q24PD9_DESHY Putative uncharacterized protein
          Length = 384

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 5/53 (9%)

Query: 1   VVTNNYFADLDAFEFIITTASPSPADDPVQVSLWGKSSTGQLVTAHRLVSAEL 53
           V+T  YFADLDAFEF+ +T+S     + V +S+WGK + G LV AHR++ AEL
Sbjct: 74  VITREYFADLDAFEFVFSTSS-----EMVAISVWGKDAEGNLVDAHRVLPAEL 121


>Q24P15.1 Q24P15_DESHY Putative uncharacterized protein
          Length = 533

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 5/53 (9%)

Query: 1   VVTNNYFADLDAFEFIITTASPSPADDPVQVSLWGKSSTGQLVTAHRLVSAEL 53
           VV   YFADLDAFEF+ +T+S     + V +S+WGK + G LV AHR++ AEL
Sbjct: 64  VVLREYFADLDAFEFVFSTSS-----ETVVISVWGKDAEGNLVDAHRVLPAEL 111


>B8FX64.1 B8FX64_DESHD Collagen triple helix repeat protein
          Length = 566

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 5/53 (9%)

Query: 1   VVTNNYFADLDAFEFIITTASPSPADDPVQVSLWGKSSTGQLVTAHRLVSAEL 53
           VV   YFADLDAFEF+ +T+S     + V +S+WGK + G LV AHR++ AEL
Sbjct: 64  VVLREYFADLDAFEFVFSTSS-----ETVVISVWGKDAEGNLVDAHRVLPAEL 111


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 371,180,521
Number of extensions: 9589247
Number of successful extensions: 17147
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 17145
Number of HSP's successfully gapped: 7
Length of query: 86
Length of database: 3,060,696,203
Length adjustment: 56
Effective length of query: 30
Effective length of database: 2,533,119,363
Effective search space: 75993580890
Effective search space used: 75993580890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)