BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0039.p (329 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0CSV1.1 C0CSV1_9CLOT Putative uncharacterized protein 290 2e-76 Q67RD8.1 Q67RD8_SYMTH LacI family transcriptional repressor 224 7e-57 Q2RJ13.1 Q2RJ13_MOOTA Transcriptional regulator, LacI family 224 1e-56 B0K1M1.1 B0K1M1_THEPX Periplasmic binding protein/LacI transcrip... 221 6e-56 Q2RGW9.1 Q2RGW9_MOOTA Transcriptional regulator, LacI family 220 2e-55 >C0CSV1.1 C0CSV1_9CLOT Putative uncharacterized protein Length = 333 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 148/328 (45%), Positives = 204/328 (62%), Gaps = 3/328 (0%) Query: 2 KVSIFDVAKKSGLSVVTVSRVINGAGSVREKNRQKVLEAIKELDYRPNAAARSLASGKTG 61 +VS+ DVA+ GLS VTVSRV+N + SVRE NRQKV+EAI+ L Y PNAAAR+LA G TG Sbjct: 6 QVSLEDVARYCGLSTVTVSRVLNHSPSVREYNRQKVMEAIEALGYIPNAAARTLARGTTG 65 Query: 62 IIGLIVTTLQDSFFDAVVKELNEVLALHGYFLAISISTGIGSDENHYLIQEDRVDGLILL 121 IIG+I LQD FF +V+E+N L H FLAISI+ G D Y++Q+ RVDG++LL Sbjct: 66 IIGMITPGLQDPFFSQIVQEVNNGLISHNLFLAISITANQGCD---YILQQQRVDGMMLL 122 Query: 122 SPMQEDNYIVELKRRGIPYVLIDNQQPENDSYSITIDNVKGGYAAARHLLELGHTSIAHL 181 +P ED ++ LK + +P+V++D+Q D I +DN GGY RH L+LGH I + Sbjct: 123 APGMEDEFVPRLKSQKVPFVVLDSQNRNADYSCILVDNFDGGYQVGRHFLDLGHRRIGFI 182 Query: 182 CGQEMFRSTRERRAGFLKALEEQGLAPFEVVHGDFEIAQGYDTAKRWLAEGKLPTAVFTG 241 G ++ ER G AL +GL+ G F A GY W+ +G +P A+F Sbjct: 183 GGPRELINSSEREHGLQAALSGEGLSVVRSERGQFCFADGYRIMTAWIGQGVVPPAIFAA 242 Query: 242 DDNIALGVINALMEAGVRIPEEVSIVGYDDHYIASQLRPHLTTLRQPADKIGMAAADMLL 301 D N+ALGVI AL E G R+P++VS+ G+DD +A + P LT + QP + A + L+ Sbjct: 243 DCNLALGVITALREHGYRVPQDVSVCGFDDEPMAQEYIPALTIVAQPVSALAECAIEQLM 302 Query: 302 KRIGGTMKRGANVRIDPELIVRESTSSK 329 IGG + R+ P+L+VREST+ + Sbjct: 303 IWIGGGRPKQLIYRLKPKLVVRESTAPR 330 >Q67RD8.1 Q67RD8_SYMTH LacI family transcriptional repressor Length = 336 Score = 224 bits (572), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 128/332 (38%), Positives = 195/332 (58%), Gaps = 5/332 (1%) Query: 3 VSIFDVAKKSGLSVVTVSRVINGAGSVREKNRQKVLEAIKELDYRPNAAARSLASGKTGI 62 ++I DVA+++G+ V TVSRV+NG G V+ + R++VL A EL Y P+ AR L +G Sbjct: 1 MTIRDVARRAGVGVATVSRVLNGTGYVKAETRERVLAAAAELGYVPSQLARGLVRRLSGT 60 Query: 63 IGLIVTTLQDSFFDAVVKELNEVLALHGY--FLAISISTGIGSDENHYLIQEDRVDGLIL 120 +GL+V + + FF + + + + + GY FL + + + ++ ++E RVDG+I Sbjct: 61 VGLVVPDITNPFFPLITRGVEDAASEAGYTVFLCNTDNDPVLEAQDVRKLREHRVDGIIF 120 Query: 121 LSPMQEDNYIVELKRRGIPYVLIDNQQPENDSYSITIDNVKGGYAAARHLLELGHTSIAH 180 + + + +L IP V++D Q D ++T+DNV G AA RHL+ELGH IAH Sbjct: 121 VGTTERRELVDQLLADDIPVVVMDRQLEHADVDTVTVDNVAGAQAACRHLIELGHRRIAH 180 Query: 181 LCGQEMFRSTRERRAGFLKALEEQGLA--PFEVVHGDFEIAQGYDTAKRWLAEGKLPTAV 238 G + R+ ++R G+ ALEE + P V GDF G+ + L PTAV Sbjct: 181 AAGHQSTRTGQDRCQGYRMALEEADIPYDPACVTWGDFTFESGFRVGQVLLGLSPRPTAV 240 Query: 239 FTGDDNIALGVINALMEAGVRIPEEVSIVGYDDHYIASQLRPHLTTLRQPADKIGMAAAD 298 F G+D IALGVI A EAG+ +P+++S+VG+D+ +A+ +RP LTT+RQPA ++G A Sbjct: 241 FAGNDLIALGVIRAAEEAGLSVPDDLSVVGFDNIQMAALVRPGLTTVRQPAREMGRLAMT 300 Query: 299 MLLKRIGGTMKRGANVRI-DPELIVRESTSSK 329 MLL+RI G + PELIVR +T + Sbjct: 301 MLLERIRGEFSGPGRRHVYPPELIVRGTTRRR 332 >Q2RJ13.1 Q2RJ13_MOOTA Transcriptional regulator, LacI family Length = 347 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 203/331 (61%), Gaps = 4/331 (1%) Query: 1 MKVSIFDVAKKSGLSVVTVSRVINGAGSVREKNRQKVLEAIKELDYRPNAAARSLASGKT 60 M+++I D+A++SG+S TVSRV+ +V K R++V + I EL YRP+ AR L G+ Sbjct: 11 MRITIKDIAQRSGVSCSTVSRVLTNHPNVDPKTRERVKQVIDELGYRPSRIARGLVMGQI 70 Query: 61 GIIGLIVTTLQDSFFDAVVKELNEVLALHGYFLAISISTGIGSDENHYL--IQEDRVDGL 118 ++ LI+ +++ F+ + + + ++L GY + +S S E Y+ +E G+ Sbjct: 71 NVVALIIGDIRNPFYAELTRAVKDILNKEGYMVVVSDSDYDPQKEEIYIRAAEEYGFAGI 130 Query: 119 ILLSPMQEDNYIVELKRRGIPYVLIDNQQPENDSYSITIDNVKGGYAAARHLLELGHTSI 178 I+++ M+ + I +L++ P VL++ P ++ I++DN GGY AA HL++LGH +I Sbjct: 131 IMITAMETEALIQQLEKLRCPVVLLNRYLPSVETDVISVDNYLGGYLAAEHLIKLGHRNI 190 Query: 179 AHLCGQEMFRSTRERRAGFLKALEEQG--LAPFEVVHGDFEIAQGYDTAKRWLAEGKLPT 236 AHL G + +TR+R GF+ A G L +V+G+ ++ GY AK +L++ + T Sbjct: 191 AHLAGFKNSSATRDRLRGFIDAHVHYGIQLNQERIVYGNLQMEAGYKFAKEYLSQNEDIT 250 Query: 237 AVFTGDDNIALGVINALMEAGVRIPEEVSIVGYDDHYIASQLRPHLTTLRQPADKIGMAA 296 AVF G+D +ALG+I AL E G IP ++S++GYDD +AS R LTT+RQP ++G A Sbjct: 251 AVFCGNDLMALGLIEALYEEGKEIPRDISVIGYDDIDMASLARVKLTTIRQPQYEMGQTA 310 Query: 297 ADMLLKRIGGTMKRGANVRIDPELIVRESTS 327 A++L+ R+ G + + P+LI+REST+ Sbjct: 311 AEVLIDRMKGKIGAPKRIIFTPKLIIRESTA 341 >B0K1M1.1 B0K1M1_THEPX Periplasmic binding protein/LacI transcriptional regulator Length = 336 Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 122/334 (36%), Positives = 199/334 (59%), Gaps = 6/334 (1%) Query: 1 MKVSIFDVAKKSGLSVVTVSRVINGAGS-VREKNRQKVLEAIKELDYRPNAAARSLASGK 59 M V+I D+AK + +S+ TVSRVIN V E+ R ++L+ +KEL Y+PNA AR L + K Sbjct: 1 MAVTIKDIAKLANVSITTVSRVINNKSEGVSEETRNRILQLVKELGYQPNAIARGLVTKK 60 Query: 60 TGIIGLIVTTLQDSFFDAVVKELNEVLALHGYFLAISISTGIGSDENHYL--IQEDRVDG 117 T IGLI+ + + FF + + + + ++GY + + + E+ Y+ ++E VDG Sbjct: 61 TKTIGLIIPDISNPFFPDIARGVEDSAHIYGYNVFLCNTDDNLEKESEYINALKEKYVDG 120 Query: 118 LILLSP-MQEDNYIVELKRRGIPYVLIDNQQPENDSYSITIDNVKGGYAAARHLLELGHT 176 +I S + + +I+EL + GIP V++D + D Y + +DN +GGY A +HL++LGH Sbjct: 121 IIFTSSSIPKHEHIMELVKSGIPIVIMDRRVDSEDIYGVFLDNYEGGYIATKHLIDLGHK 180 Query: 177 SIAHLCGQEMFRSTRERRAGFLKALEEQGLAPFE--VVHGDFEIAQGYDTAKRWLAEGKL 234 IA + G +S +ER G+ KAL E G+ E + GD++I G ++ L + Sbjct: 181 KIACITGPLYTKSAKERLEGYKKALVENGMDVDERLIFEGDYKINSGIIGTEKLLGNNEN 240 Query: 235 PTAVFTGDDNIALGVINALMEAGVRIPEEVSIVGYDDHYIASQLRPHLTTLRQPADKIGM 294 TA+F +D +A G + G +IP+++SIVG+DD ++ L P LTT++QPA +G+ Sbjct: 241 VTAIFACNDLMAYGAYKTIRSYGYKIPDDISIVGFDDIQLSQILEPQLTTIKQPAYDMGL 300 Query: 295 AAADMLLKRIGGTMKRGANVRIDPELIVRESTSS 328 AAA ML+K + G + + P+LI+R+ST + Sbjct: 301 AAARMLIKLVEGKKLKKKIINFRPQLIIRQSTKN 334 >Q2RGW9.1 Q2RGW9_MOOTA Transcriptional regulator, LacI family Length = 348 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 128/331 (38%), Positives = 201/331 (60%), Gaps = 7/331 (2%) Query: 4 SIFDVAKKSGLSVVTVSRVINGAGSVREKNRQKVLEAIKELDYRPNAAARSLASGKTGII 63 +I DVA+++G+S TVSRV+NG V E+ R++VLEAIKEL+YRP+A ARSL KT I Sbjct: 3 NISDVARRAGVSRTTVSRVLNGKDDVNEETRRRVLEAIKELNYRPSALARSLVKQKTDTI 62 Query: 64 GLIVTTLQDSFFDAVVKELNEVLALHGYFLAISISTGIGSDENHY--LIQEDRVDGLILL 121 G+I++ + D FF +++ + +V GY + + +++Y ++ RVDGL+++ Sbjct: 63 GVILSDITDPFFSLIIQGVEDVAHKFGYGIVYASMRWDPQIKHNYVSFLRNGRVDGLLMM 122 Query: 122 S-PMQEDNYIVELKRRGIPYVLIDNQQPENDSYSITIDNVKGGYAAARHLLELGHTSIAH 180 + ++Y+ E+ P VL++ + I+IDN GGY A RHLL LGH IAH Sbjct: 123 GHTVGNEDYVREMVEDKFPLVLVEYWIENLKANFISIDNKGGGYLATRHLLGLGHRRIAH 182 Query: 181 LCGQEMFRSTRERRAGFLKALEEQGLAPFE---VVHGDFEIAQGYDTAKRWLAEGKLPTA 237 + G + R ++ER AG+ +ALEE G P++ VV+ DF AK+ L+ + PTA Sbjct: 183 VAGHKNARVSQERLAGYRQALEEAG-RPYDESLVVYSDFTTEGAIPVAKKLLSLPERPTA 241 Query: 238 VFTGDDNIALGVINALMEAGVRIPEEVSIVGYDDHYIASQLRPHLTTLRQPADKIGMAAA 297 +F +D +A GVI+A E G+R+P+++++VGYDD +AS + P LTT+ QP +IG AA Sbjct: 242 IFAANDLMAYGVIHAARELGLRVPKDLAVVGYDDIELASLVTPPLTTIHQPRYEIGSMAA 301 Query: 298 DMLLKRIGGTMKRGANVRIDPELIVRESTSS 328 L+++I + L++RES + Sbjct: 302 WSLIQQIENKEMQPTVTEFKTSLVIRESCGA 332 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,890,488,450 Number of extensions: 79579760 Number of successful extensions: 255671 Number of sequences better than 1.0e-05: 9746 Number of HSP's gapped: 237845 Number of HSP's successfully gapped: 9763 Length of query: 329 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 193 Effective length of database: 1,779,438,163 Effective search space: 343431565459 Effective search space used: 343431565459 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)