BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0037.p (293 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0V077.1 C0V077_9BACT Carbohydrate ABC transporter membrane prot... 231 6e-59 B7DT28.1 B7DT28_9BACL Binding-protein-dependent transport system... 231 8e-59 Q5WL95.1 Q5WL95_BACSK Sugar ABC transporter permease 220 2e-55 Q5WBF2.1 Q5WBF2_BACSK Sugar ABC transporter permease 216 2e-54 A8F6R7.1 A8F6R7_THELT Binding-protein-dependent transport system... 213 2e-53 >C0V077.1 C0V077_9BACT Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 301 Score = 231 bits (589), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 119/252 (47%), Positives = 167/252 (66%), Gaps = 10/252 (3%) Query: 46 VSTSLKSKKEMLKFPPTFLPESWAWSNYRDIFDTLQFGTLYKNSLIIAVLTVIGTLISSG 105 +STSLK ++ ++PP ++P WSNY + TL FG KN+L+I VL ++G L+SS Sbjct: 55 ISTSLKETWQVFRYPPQWIPNPVRWSNYPEALTTLPFGLYVKNTLVITVLNMVGILLSSS 114 Query: 106 LVAYGFARFRGRGNQFLFVLVLSTMMLPYPAIMIPQFVLFSHMNWIDTFLPLIVPAFFGS 165 L AYGFAR R G +F+++LST+MLPY MIP +++F ++ WIDT+ PLIVP +FG Sbjct: 115 LCAYGFARLRFPGRDLIFMVLLSTLMLPYAVTMIPSYIIFKYLGWIDTYYPLIVPNWFGG 174 Query: 166 A-YNIFLLRQFFSTLPEELFDAGRIDGCGELRMWWKIALPLXXXXXXXXXXXXXXXXXWN 224 +NIFLLRQFF T+P EL +A RIDG E R++W+I LPL WN Sbjct: 175 GIFNIFLLRQFFRTIPVELSEAARIDGASEFRIYWQIILPL-ARPALTVVAIFTFLNNWN 233 Query: 225 DLLTPVLYLSSSEKFTLPVGMAS---LTSSRFRIPPWHLLMVASVLAMLPIVTLFALAQK 281 D + P++YLSS EK+T+ +G+A+ L S++ W LM AS + +LP++ LF LAQ+ Sbjct: 234 DFIGPLIYLSSPEKYTVALGLATFKGLYSTQ-----WQYLMAASTVMILPVIALFFLAQR 288 Query: 282 QFVEGIVLTGIK 293 FV+GIVLTG+K Sbjct: 289 YFVQGIVLTGLK 300 >B7DT28.1 B7DT28_9BACL Binding-protein-dependent transport systems inner membrane component Length = 292 Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 121/248 (48%), Positives = 163/248 (65%), Gaps = 3/248 (1%) Query: 46 VSTSLKSKKEMLKFPPTFLPESWAWSNYRDIFDTLQFGTLYKNSLIIAVLTVIGTLISSG 105 V +SLK ++ FPPT+ P+ WSNY + FG NSL+IA++ VIG L+S+ Sbjct: 47 VISSLKPNDQIFVFPPTWWPKPVEWSNYIQALTSQPFGRYALNSLLIALVNVIGNLVSNS 106 Query: 106 LVAYGFARFRGRGNQFLFVLVLSTMMLPYPAIMIPQFVLFSHMNWIDTFLPLIVPAFFGS 165 VAYGFARFR G + LF+L+L+TMM+P +++PQF+LF + WIDTFLPL VP+FFGS Sbjct: 107 FVAYGFARFRFPGRRLLFMLLLATMMVPSQVLLVPQFILFHDLGWIDTFLPLTVPSFFGS 166 Query: 166 AYNIFLLRQFFSTLPEELFDAGRIDGCGELRMWWKIALPLXXXXXXXXXXXXXXXXXWND 225 A+ +FLLRQFF T+P EL +A RIDG G LR+++ + LPL WND Sbjct: 167 AFYVFLLRQFFMTIPVELEEAARIDGAGPLRIFFSVVLPL-IRPALTAVAIFSFQGAWND 225 Query: 226 LLTPVLYLSSSEKFTLPVGMASLTSSRFRIPPWHLLMVASVLAMLPIVTLFALAQKQFVE 285 LTP++YLS KFTL +G+A S W+L+M ASV+ MLP+ +F +AQK FV+ Sbjct: 226 FLTPLIYLSDPSKFTLQLGLAQFQGSFHT--DWNLIMAASVVVMLPMAIIFFVAQKYFVQ 283 Query: 286 GIVLTGIK 293 GI +TG K Sbjct: 284 GITMTGTK 291 >Q5WL95.1 Q5WL95_BACSK Sugar ABC transporter permease Length = 310 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 106/248 (42%), Positives = 162/248 (65%), Gaps = 3/248 (1%) Query: 46 VSTSLKSKKEMLKFPPTFLPESWAWSNYRDIFDTLQFGTLYKNSLIIAVLTVIGTLISSG 105 VSTS+K++ + + +PPT P + ++NYR++F+ + F Y N++++ LTVIGT+ SS Sbjct: 65 VSTSIKTESQAISYPPTLWPAPFDFANYREVFELVPFLQFYSNTIVVTGLTVIGTVASSA 124 Query: 106 LVAYGFARFRGRGNQFLFVLVLSTMMLPYPAIMIPQFVLFSHMNWIDTFLPLIVPAFFGS 165 +VAY FAR +GRG F+L+L TMMLP MIP +++F+ + W++TFLPL+VPAF G+ Sbjct: 125 VVAYAFARIKGRGRSVWFILLLCTMMLPPQVTMIPVYLIFTELGWVNTFLPLVVPAFLGN 184 Query: 166 AYNIFLLRQFFSTLPEELFDAGRIDGCGELRMWWKIALPLXXXXXXXXXXXXXXXXXWND 225 A+ IFLLRQFF +P+EL ++ IDGC ++W+I +PL WND Sbjct: 185 AFFIFLLRQFFRAIPKELEESAIIDGCSLFGIFWRIVVPL-SKPALITVAILSFMGSWND 243 Query: 226 LLTPVLYLSSSEKFTLPVGMASLTSSRFRIPPWHLLMVASVLAMLPIVTLFALAQKQFVE 285 LTP++YL+ +K+TL +G+ + W +M AS + + P+V LF +AQK F++ Sbjct: 244 FLTPLIYLNDIDKYTLALGLQMFNGQQTM--QWGPMMAASTMVIFPLVVLFFIAQKHFIQ 301 Query: 286 GIVLTGIK 293 GI L+GIK Sbjct: 302 GIALSGIK 309 >Q5WBF2.1 Q5WBF2_BACSK Sugar ABC transporter permease Length = 288 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/248 (45%), Positives = 164/248 (66%), Gaps = 2/248 (0%) Query: 46 VSTSLKSKKEMLKFPPTFLPESWAWSNYRDIFDTLQFGTLYKNSLIIAVLTVIGTLISSG 105 V TSLKS ++++ P + LP +W WSNY ++F FGT N+ ++TV GT+ S Sbjct: 42 VFTSLKSLEQIVSEPLSLLPNNWNWSNYVEVFQNHPFGTYLWNTTWYTIVTVCGTVFFSA 101 Query: 106 LVAYGFARFRGRGNQFLFVLVLSTMMLPYPAIMIPQFVLFSHMNWIDTFLPLIVPAFFGS 165 +A+GFARFR RG FLF +VLSTMMLP MIPQ++LF+ + W+D++LPL VP GS Sbjct: 102 FIAFGFARFRARGKTFLFAIVLSTMMLPPQVTMIPQYLLFNKIGWVDSYLPLTVPMLAGS 161 Query: 166 AYNIFLLRQFFSTLPEELFDAGRIDGCGELRMWWKIALPLXXXXXXXXXXXXXXXXXWND 225 A+ IFLLRQF+ LP+EL +A IDG G ++++I LPL WND Sbjct: 162 AFLIFLLRQFYMGLPKELDEAVTIDGGGYFTIFFRIILPL-SFPAMATAAILEFMFRWND 220 Query: 226 LLTPVLYLSSSEKFTLPVGMASLTSSRFRIPPWHLLMVASVLAMLPIVTLFALAQKQFVE 285 L+ P++YL++ + + L +G+A+ T++ + PW LLM ASV+A++P + LF LAQK F++ Sbjct: 221 LIGPLIYLNTQDLYPLSLGLANFTAA-YAATPWQLLMAASVMAVIPPLVLFFLAQKYFIQ 279 Query: 286 GIVLTGIK 293 G+V++G K Sbjct: 280 GVVISGTK 287 >A8F6R7.1 A8F6R7_THELT Binding-protein-dependent transport systems inner membrane component Length = 271 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/248 (43%), Positives = 156/248 (62%), Gaps = 4/248 (1%) Query: 47 STSLKS-KKEMLKFPPTFLPESWAWSNYRDIFDTLQFGTLYKNSLIIAVLTVIGTLISSG 105 STSLKS + E+ +PP LPE++ +SNY+ + + + T KNS II L+ IG ++SS Sbjct: 26 STSLKSGEDEIFSYPPKLLPETFNFSNYKKVLELFPWLTFLKNSAIITGLSTIGIVLSSS 85 Query: 106 LVAYGFARFRGRGNQFLFVLVLSTMMLPYPAIMIPQFVLFSHMNWIDTFLPLIVPAFFGS 165 L A+ FA +G LF+LV+STMM+PY +IPQ++LFS + WIDT PL VP+FFGS Sbjct: 86 LAAFAFATLEFKGRDKLFILVISTMMVPYYTTLIPQYILFSKLGWIDTLKPLWVPSFFGS 145 Query: 166 AYNIFLLRQFFSTLPEELFDAGRIDGCGELRMWWKIALPLXXXXXXXXXXXXXXXXXWND 225 AY IFLLRQFF ++P+ELF+A +IDGC ++++KI PL W D Sbjct: 146 AYFIFLLRQFFKSIPKELFEAAKIDGCSIFQIFYKIYFPL-AKPAVITVVILQFMSAWGD 204 Query: 226 LLTPVLYLSSSEKFTLPVGMASLTSSRFRIPPWHLLMVASVLAMLPIVTLFALAQKQFVE 285 P++YL S EK+TL +G+ + + WH LM A+ + +P + +FAL QK + Sbjct: 205 FFGPLIYLQSEEKYTLVLGLNAFRGMYYT--SWHYLMAATCMVTIPSLIVFALGQKHIIG 262 Query: 286 GIVLTGIK 293 GI +TG+K Sbjct: 263 GITITGMK 270 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.140 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,497,189,109 Number of extensions: 57676442 Number of successful extensions: 179457 Number of sequences better than 1.0e-05: 5692 Number of HSP's gapped: 167414 Number of HSP's successfully gapped: 5692 Length of query: 293 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 159 Effective length of database: 1,798,280,193 Effective search space: 285926550687 Effective search space used: 285926550687 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)