BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0036.p (297 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0V0J9.1 C0V0J9_9BACT Carbohydrate ABC transporter membrane prot... 286 2e-75 Q5WBF3.1 Q5WBF3_BACSK Sugar ABC transporter permease 270 1e-70 Q5WL96.1 Q5WL96_BACSK Sugar ABC transporter permease 266 2e-69 Q2B461.1 Q2B461_9BACI Sugar ABC transporter permease 261 4e-68 C0Z9S7.1 C0Z9S7_BREBN Probable ABC transporter permease protein 261 7e-68 >C0V0J9.1 C0V0J9_9BACT Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 306 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 150/295 (50%), Positives = 207/295 (70%) Query: 2 IKSESRRQTFYMYMFISPWLVGFLVFALYPILSSLYYSFTDYDIIHPPKFIGLANYTEMF 61 I + SRR+ + Y+FISPWLVGFLVF L PIL+S+ S TD+ ++ PP+F+GLANY + Sbjct: 10 ILTASRREVLFGYLFISPWLVGFLVFQLGPILASVGISLTDWSLLRPPRFVGLANYRRLA 69 Query: 62 HNELFWKSVTVTLRYTLVSVPIQXXXXXXXXXXXHQTIPLRGFFRTAMYFPSMVSGVAMS 121 + LF++S+ VT YT VSVP+ ++ + FFRT Y P++++GV + Sbjct: 70 TDPLFFQSLKVTATYTAVSVPLGVVAALLVAVLLNRAVFGISFFRTLFYLPTVLAGVGTA 129 Query: 122 LLWYWIFNPQIGLFNYMLSWFGIHGPSWLMNPDTALYALIIMSFWTAGSGMILFLAGLQG 181 ++W W+F+P G+ NY+LS FG+ GP WL +P+ AL ALIIMSFW G +++FLA LQG Sbjct: 130 VIWGWMFDPNFGVVNYVLSIFGVRGPDWLASPEWALPALIIMSFWGIGGAIVIFLAALQG 189 Query: 182 VPASLIEAANLDGAGRFRIFLNITLPMISPVLLFQLIMGLIDSFQVFTQAFVMTQGGPNY 241 VP +L EAA +DGAGR +T+PMISPV+LF +I G+I SFQ FT A+V+T GGPNY Sbjct: 190 VPRALYEAAEIDGAGRLAKLWYVTIPMISPVILFNVITGVISSFQTFTYAYVLTGGGPNY 249 Query: 242 STWFYVYNLYTSAFKEYRAGYSSALAWVLLIVVMILTAIIMKLSNRYVHYEGGGR 296 +T FYV LY +AF + GY+SALAWVL ++++ LT +I++LS YVHYEG R Sbjct: 250 ATLFYVLYLYENAFHWFEMGYASALAWVLFLLIIGLTILILRLSRAYVHYEGALR 304 >Q5WBF3.1 Q5WBF3_BACSK Sugar ABC transporter permease Length = 312 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 135/288 (46%), Positives = 194/288 (67%), Gaps = 1/288 (0%) Query: 6 SRRQTFYMYMFISPWLVGFLVFALYPILSSLYYSFTDYDIIHPPKFIGLANYTEMFHNEL 65 +RR+ Y ++FISPWLVGFL+F PIL+SLY+SFTDY I+ F+GL N+ +F + L Sbjct: 22 ARREEKYFWLFISPWLVGFLLFIGGPILASLYFSFTDYAIMDTATFVGLQNFINLFSDPL 81 Query: 66 FWKSVTVTLRYTLVSVPIQXXXXXXXXXXXHQTIPLRGFFRTAMYFPSMVSGVAMSLLWY 125 F++S+ VT Y +++P + I + FFRT Y PS++SGV+++ LW Sbjct: 82 FYRSLFVTFAYAALAIPFTMIVGLGLAMLLNMKIKGQAFFRTFFYAPSIISGVSVAFLWM 141 Query: 126 WIFNPQIGLFNYML-SWFGIHGPSWLMNPDTALYALIIMSFWTAGSGMILFLAGLQGVPA 184 WI NPQ G+ N +L FGI GP W +P T + + ++M GS MI+FLA LQ +P Sbjct: 142 WILNPQFGIVNSILYELFGIQGPGWFTDPYTVIPSFVLMQLTAVGSTMIIFLASLQQLPK 201 Query: 185 SLIEAANLDGAGRFRIFLNITLPMISPVLLFQLIMGLIDSFQVFTQAFVMTQGGPNYSTW 244 L EAA +DGAG +R F NIT+P+ISPV+LF I+ LI SFQ+FTQA+V+T GGP++ ++ Sbjct: 202 ELYEAAAIDGAGAWRRFRNITVPLISPVILFNGIIALISSFQIFTQAYVITDGGPDWMSY 261 Query: 245 FYVYNLYTSAFKEYRAGYSSALAWVLLIVVMILTAIIMKLSNRYVHYE 292 FYVY L+ +AF + R GY+SA AW+L +++ LT + + +S + VHYE Sbjct: 262 FYVYYLFETAFFQNRIGYASAQAWILFLIIFALTFLSLYVSRKSVHYE 309 >Q5WL96.1 Q5WL96_BACSK Sugar ABC transporter permease Length = 300 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/287 (48%), Positives = 188/287 (65%), Gaps = 1/287 (0%) Query: 7 RRQTFYMYMFISPWLVGFLVFALYPILSSLYYSFTDYDIIHPPKFIGLANYTEMF-HNEL 65 R +T Y+FISPWL+GFL A P++ S Y SFT++ ++ ++IGL NY +F H+ L Sbjct: 11 RSKTLAFYLFISPWLIGFLALAAGPMIYSFYMSFTEWQVMGGAEWIGLENYERLFFHDPL 70 Query: 66 FWKSVTVTLRYTLVSVPIQXXXXXXXXXXXHQTIPLRGFFRTAMYFPSMVSGVAMSLLWY 125 FWK++ T YT + VP+ +Q + G FRT Y PS+V VA SLLW Sbjct: 71 FWKTMWNTFFYTFLGVPLGLAFGYLLAVLLNQKVKFMGVFRTIFYLPSIVPAVASSLLWV 130 Query: 126 WIFNPQIGLFNYMLSWFGIHGPSWLMNPDTALYALIIMSFWTAGSGMILFLAGLQGVPAS 185 IF P+ GL N +L G+ WL++ ALIIMS W G GMI++LAGLQGVP S Sbjct: 131 LIFQPEFGLANALLDSVGLPTSRWLLSESMVKPALIIMSLWGVGGGMIIYLAGLQGVPPS 190 Query: 186 LIEAANLDGAGRFRIFLNITLPMISPVLLFQLIMGLIDSFQVFTQAFVMTQGGPNYSTWF 245 L EAA +DGAG++R F +IT+PM S V+ F LIMG+I SFQVFTQA+VM+ GGPNY++ F Sbjct: 191 LYEAAEIDGAGKWRKFWHITIPMTSHVIFFNLIMGVIGSFQVFTQAYVMSGGGPNYASLF 250 Query: 246 YVYNLYTSAFKEYRAGYSSALAWVLLIVVMILTAIIMKLSNRYVHYE 292 YV LY +AF+ + GY+SALAWVL ++V+I T + K + V+YE Sbjct: 251 YVLYLYQNAFEFFNMGYASALAWVLFVIVLIFTLLQFKFFGKKVYYE 297 >Q2B461.1 Q2B461_9BACI Sugar ABC transporter permease Length = 311 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 136/305 (44%), Positives = 194/305 (63%), Gaps = 10/305 (3%) Query: 3 KSESRR------QTFYMYMFISPWLVGFLVFALYPILSSLYYSFTDYDIIHPPKFIGLAN 56 KSE +R + Y+FISPW++GFL L P+L SL+ SFTDY+I FIGL N Sbjct: 7 KSEPKRLSRKAKDNLFGYLFISPWIIGFLGLTLGPLLFSLFASFTDYNITSRMNFIGLDN 66 Query: 57 YTEMFH-NELFWKSVTVTLRYTLVSVPIQXXXXXXXXXXXHQTIPLRGFFRTAMYFPSMV 115 + MF ++LF S+ T+ Y L SVP+ +Q + FFRT Y P+++ Sbjct: 67 FKRMFTIDDLFKTSLWNTIYYVLFSVPLTTAGAILLAVLLNQRVKGMKFFRTVYYLPAIL 126 Query: 116 SGVAMSLLWYWIFNPQIGLFNYMLSWFGIHGPSWLMNPDTALYALIIMSFWTAGSGMILF 175 SGVA+ LW + +P GL N L+WF I GP+WL +P+ AL++M W+ G GM+L+ Sbjct: 127 SGVAVYFLWMQLLSPSTGLVNTFLAWFDIEGPAWLFDPEWTKPALLLMKMWSVGGGMLLY 186 Query: 176 LAGLQGVPASLIEAANLDGAGRFRIFLNITLPMISPVLLFQLIMGLIDSFQVFTQAFVMT 235 LA LQGV A + EAA+LDGA F+ F +ITLPMISP++ F +I I SFQ+F +A+VMT Sbjct: 187 LASLQGVSAQMYEAADLDGASSFQKFFHITLPMISPIIFFDVITSTIGSFQIFQEAYVMT 246 Query: 236 Q---GGPNYSTWFYVYNLYTSAFKEYRAGYSSALAWVLLIVVMILTAIIMKLSNRYVHYE 292 + GGP S FY +++ +AF+ + GY+SA+AW+L ++VM+LT I + L ++VHYE Sbjct: 247 ENGDGGPGNSLLFYNLHMWNNAFEIFDMGYASAMAWLLFLIVMVLTVINLTLGKKWVHYE 306 Query: 293 GGGRR 297 GG + Sbjct: 307 GGDNK 311 >C0Z9S7.1 C0Z9S7_BREBN Probable ABC transporter permease protein Length = 313 Score = 261 bits (666), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 129/296 (43%), Positives = 194/296 (65%), Gaps = 1/296 (0%) Query: 3 KSESRRQTFYMYMFISPWLVGFLVFALYPILSSLYYSFTDYDIIHPPKFIGLANYTEMFH 62 K R Y+FI PW++GFL F L P+L SL SF D+ ++ F+GL NY MF Sbjct: 13 KKLKGRAFLTPYLFILPWILGFLAFTLGPMLFSLVMSFFDWPVVGEVTFVGLDNYINMFT 72 Query: 63 NE-LFWKSVTVTLRYTLVSVPIQXXXXXXXXXXXHQTIPLRGFFRTAMYFPSMVSGVAMS 121 ++ LFW+S+ VT+++ L+ VP+ +Q + GFFRT Y PS++SGVA++ Sbjct: 73 DDPLFWQSLWVTIKFALLFVPLNLFIALFLAMMLNQKVKGSGFFRTVFYLPSVISGVALA 132 Query: 122 LLWYWIFNPQIGLFNYMLSWFGIHGPSWLMNPDTALYALIIMSFWTAGSGMILFLAGLQG 181 ++W W+++ + G+FNY+LS GI GP WL + AL A++I S W GS +++FLAGL+ Sbjct: 133 MIWAWVYDGEYGIFNYLLSLVGITGPDWLNDTSWALVAMVIASLWGQGSMVLIFLAGLKS 192 Query: 182 VPASLIEAANLDGAGRFRIFLNITLPMISPVLLFQLIMGLIDSFQVFTQAFVMTQGGPNY 241 +P SL EAA++DGAG + F ITLPM+SP +LF LIM +I +FQ + A ++T GGP Sbjct: 193 IPESLYEAASIDGAGAVQKFFRITLPMVSPTILFNLIMTIISAFQQLSLALLLTGGGPLQ 252 Query: 242 STWFYVYNLYTSAFKEYRAGYSSALAWVLLIVVMILTAIIMKLSNRYVHYEGGGRR 297 ST+FY Y +AFK ++ GY+SA +W + ++++LT ++ K S ++V+YEG RR Sbjct: 253 STYFYAMYAYDNAFKYFKMGYASANSWFMFAIILVLTFLVFKTSGKWVYYEGDNRR 308 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.143 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,737,949,279 Number of extensions: 69770799 Number of successful extensions: 292410 Number of sequences better than 1.0e-05: 5907 Number of HSP's gapped: 280538 Number of HSP's successfully gapped: 5920 Length of query: 297 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 162 Effective length of database: 1,788,859,178 Effective search space: 289795186836 Effective search space used: 289795186836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 131 (55.1 bits)