BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0033.p (385 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9JLW0.1 B9JLW0_AGRRK Acetylornithine deacetylase protein 254 8e-66 B5XSB4.1 B5XSB4_KLEP3 Peptidase, ArgE/DapE family EC=3.4.-.- 252 5e-65 A9CL51.1 A9CL51_AGRT5 Acetylornithine deacetylase 244 1e-62 C4CQ16.1 C4CQ16_9CHLR Acetylornithine deacetylase or succinyl-di... 212 6e-53 C4CRJ6.1 C4CRJ6_9CHLR Acetylornithine deacetylase or succinyl-di... 211 8e-53 >B9JLW0.1 B9JLW0_AGRRK Acetylornithine deacetylase protein Length = 390 Score = 254 bits (650), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 152/375 (40%), Positives = 205/375 (54%), Gaps = 3/375 (0%) Query: 10 RVIQLLADLIGFQSVNPGGTEGDAAAYVAKVMRKAGCEVELQEIEPGRPNVIARLKGAGG 69 R+ + LA+LI ++ NP G E DAA YV ++ AG V++ E +PGR NV ARL G Sbjct: 14 RMKRELAELIAIRTENPPGREADAAVYVRDMLLSAGFAVDITEYKPGRFNVEARLDN-GP 72 Query: 70 GRTIILNTHMDVVPAGEGWSSDPFTLLRKGERVYGRGVMDAKGPLXXXXXXXXXXXXXXX 129 G NTHMD VPAG+GWSSDPFTL ++YGRG D KGPL Sbjct: 73 GPVFAFNTHMDTVPAGDGWSSDPFTLREADGKLYGRGACDCKGPLIAMVEAMRMLASDRS 132 Query: 130 HLPGDIVLAAVVDEEAASLGARNLPDNLHG-DLAVIGEATAGNLAVAHRGSIRPVLAAEG 188 G ++ V DEE AS GA+ D AV+GE T+ AH+GS+RPV+ G Sbjct: 133 TWSGTLLGVFVGDEEIASEGAKFYAAGKPKIDFAVVGEPTSNTTFAAHKGSLRPVVRVHG 192 Query: 189 VSAHSSTPHLGVNAVSLMVRTLMALEDFAEQELTKRLHPLTGQSTLSVTVINGGIKESMI 248 +AHS TPHLG NA+ + L +E + + R HPL G+++L+VT I+GG ++++ Sbjct: 193 QAAHSGTPHLGENAIYRAGQLLSLIEAHHNEVVRGRTHPLVGEASLTVTRISGGHADNVV 252 Query: 249 PDRCEALIDRRLIPGEAEEDALQEIRQIIAGLPA-LGGRVRIDRLVPTTGVASETRPDHP 307 P C+ L+DRR++PGE EE QE ++A A G R I TTG A+ET D Sbjct: 253 PYACDLLLDRRMVPGENEEVVKQEFADLLALAQARFGVRAEIIDYKATTGGATETAIDSA 312 Query: 308 MVELAAAAIERVYGRRPELTGLTANCDMTHFVKRGIPSVIYGPGDFSVAHTIGEWVTVSE 367 +V+ + AA P G CD+ HF + G + GPGD SVAH E+V V E Sbjct: 313 IVQASMAACRSHGIANPGPFGFQGGCDLVHFRQIGAQGTVIGPGDLSVAHKPDEFVPVDE 372 Query: 368 LENASRVYASIAMEV 382 AS +Y +A + Sbjct: 373 FVTASLIYRDVAQSM 387 >B5XSB4.1 B5XSB4_KLEP3 Peptidase, ArgE/DapE family EC=3.4.-.- Length = 391 Score = 252 bits (643), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 151/378 (39%), Positives = 206/378 (54%), Gaps = 4/378 (1%) Query: 6 IRSERVIQLLADLIGFQSVNPGGTEGDAAAYVAKVMRKAGCEVELQEIEPGRPNVIARLK 65 + S R+ + LA L+ + NP G E +AA + + AG ++ E PGR NVIA L Sbjct: 6 VDSARMKKDLATLVAINTENPPGHEREAAECLEGWLLTAGFDLSFSEYAPGRTNVIAVLN 65 Query: 66 GAGGGRTIILNTHMDVVPAGEGWSSDPFTLLRKGERVYGRGVMDAKGPLXXXXXXXXXXX 125 G G NTH+D VPAG GW+SDPFTL + R+YGRG DAKGPL Sbjct: 66 N-GPGPCFAFNTHLDTVPAGSGWASDPFTLTERDGRLYGRGACDAKGPLVAMVEALRLLA 124 Query: 126 XXXXHLPGDIVLAAVVDEEAASLGAR-NLPDNLHG-DLAVIGEATAGNLAVAHRGSIRPV 183 G ++ DEE AS GA+ + DN D AVIGE T+ AH+GS+RP Sbjct: 125 ANRQQWSGTLMGVFTADEEVASEGAKFYVRDNPPAIDFAVIGEPTSNATFSAHKGSLRPR 184 Query: 184 LAAEGVSAHSSTPHLGVNAVSLMVRTLMALEDFAEQELTKRLHPLTGQSTLSVTVINGGI 243 + +GV+AHS TP LGVNA+ R L +E+ Q++ R H L G ++L+VT I+GG Sbjct: 185 VRVKGVTAHSGTPELGVNAIYQSARLLGLIEEAHHQQVRCRCHDLVGNASLTVTRIHGGH 244 Query: 244 KESMIPDRCEALIDRRLIPGEAEEDALQEIRQIIAGLPALGG-RVRIDRLVPTTGVASET 302 ++++PD CE L+DRR++PGE EE E++Q++ A G I PTTG A++T Sbjct: 245 ADNVVPDSCELLLDRRMVPGEDEEVVKAELQQLLDHAYAHAGVEAEIIAWQPTTGGATQT 304 Query: 303 RPDHPMVELAAAAIERVYGRRPELTGLTANCDMTHFVKRGIPSVIYGPGDFSVAHTIGEW 362 +VE + AA R P G CD+ HF G V+ GPG +VAH E+ Sbjct: 305 DSREAIVEQSLAACRRHGQSEPGPFGFQGGCDLVHFRSLGAKGVVIGPGSLAVAHKPDEF 364 Query: 363 VTVSELENASRVYASIAM 380 V V E A+ +Y IA+ Sbjct: 365 VPVDEFIAAAYLYLDIAL 382 >A9CL51.1 A9CL51_AGRT5 Acetylornithine deacetylase Length = 387 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 140/375 (37%), Positives = 200/375 (53%), Gaps = 3/375 (0%) Query: 10 RVIQLLADLIGFQSVNPGGTEGDAAAYVAKVMRKAGCEVELQEIEPGRPNVIARLKGAGG 69 R+ + LA++I +S NP G E D A YV ++++ G V L E +PGR NV AR++ G Sbjct: 9 RMKRELAEIIAIRSENPPGGEADVAVYVERLLKDEGFSVSLTEYKPGRFNVEARIEN-GP 67 Query: 70 GRTIILNTHMDVVPAGEGWSSDPFTLLRKGERVYGRGVMDAKGPLXXXXXXXXXXXXXXX 129 G NTHMD VPAG+GW++D F L +++GRG D KGPL Sbjct: 68 GPVFAFNTHMDTVPAGDGWTTDAFILREDDGKLFGRGACDCKGPLIAMIEAMRMLAADRT 127 Query: 130 HLPGDIVLAAVVDEEAASLGARNLPDNLHG-DLAVIGEATAGNLAVAHRGSIRPVLAAEG 188 G ++ V DEE AS GA+ D AV+GE T+ AH+GS+RPV+ G Sbjct: 128 AWSGTLLGVFVGDEEIASEGAKYYAAARPKIDFAVVGEPTSNTTYSAHKGSLRPVVRVHG 187 Query: 189 VSAHSSTPHLGVNAVSLMVRTLMALEDFAEQELTKRLHPLTGQSTLSVTVINGGIKESMI 248 V+AHS TPHLG NA+ + L +E F + KR HPL G+++L+VT I+GG ++++ Sbjct: 188 VTAHSGTPHLGDNAIYRAGQLLTLVEAFHNNVVRKRTHPLVGEASLTVTRISGGHADNVL 247 Query: 249 PDRCEALIDRRLIPGEAEEDALQEIRQIIA-GLPALGGRVRIDRLVPTTGVASETRPDHP 307 P C+ L+DRR++PGE+E+ QE ++ G + I TTG A+ET D Sbjct: 248 PGSCDLLLDRRMVPGESEDAVKQEFATLLKDAYDRFGVKAEIVDYKATTGSATETAADQS 307 Query: 308 MVELAAAAIERVYGRRPELTGLTANCDMTHFVKRGIPSVIYGPGDFSVAHTIGEWVTVSE 367 +V + A P G CD+ HF G + GPG SVAH E+V + E Sbjct: 308 IVAASLEACRASGTSDPGPFGFQGGCDLVHFRSLGAQGTVIGPGSLSVAHKADEFVPLDE 367 Query: 368 LENASRVYASIAMEV 382 S +Y +A ++ Sbjct: 368 FVTCSVIYRDVARKM 382 >C4CQ16.1 C4CQ16_9CHLR Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Length = 385 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 147/385 (38%), Positives = 201/385 (52%), Gaps = 15/385 (3%) Query: 11 VIQLLADLIGFQSVNP---GGTEGDAA--AYVAKVMRKAGCEVELQEIEPGRPNVIARLK 65 V++LLA L+ +SVNP G G+AA +VA R AG EV +EI PGRPNV+A L+ Sbjct: 6 VVELLAQLVAIESVNPAYPGPASGEAAIAGFVADFCRAAGAEVRTREILPGRPNVVATLR 65 Query: 66 GAGGGRTIILNTHMDVVPAGEGWSSDPFTLLR---KGERVYGRGVMDAKGPLXXXXXXXX 122 G ++ H+D V G LR +G+R+YGRG D KG L Sbjct: 66 SGRPGPALVFEAHLDTV----GILDMGEAALRPRIEGDRLYGRGACDVKGGLAAMLAALA 121 Query: 123 XXXXXXXHLPGDIVLAAVVDEEAASLGARNLPDN-LHGDLAVIGEATAGNLAVAHRGSIR 181 LP D+VLAAV+DEEA G R D L AV+ E T + +AH+G +R Sbjct: 122 KLAPRRDELPQDLVLAAVMDEEATFQGVRGFLDEGLPIAAAVVAEPTELRVVIAHKGCVR 181 Query: 182 PVLAAEGVSAHSSTPHLGVNAVSLMVRTLMALEDFAEQELTKRLHPLTGQSTLSVTVING 241 + G +AHS+ P G+NA+ M + AL + L R HPL G+ TLSV I G Sbjct: 182 WRIRTVGRAAHSARPDEGLNAIDQMAEVVRALRRELQPRLAMRSHPLLGRPTLSVGTIAG 241 Query: 242 GIKESMIPDRCEALIDRRLIPGEAEEDALQEIRQIIAGLPALGGRVRIDRLVP-TTGVAS 300 G +++P C +DRRLIPGE AL E+ ++A L + ++R P Sbjct: 242 GTGVNVVPAECVIEVDRRLIPGETGASALAEVDAVLADLRRAEPWITVEREEPWIVDGCL 301 Query: 301 ETRPDHPMVELAAAAIERVYGRRPELTGLTANCDMTHFVKRGIPSVIYGPGDFSVAHTIG 360 +T PD P+V A AA R G E TG+ D + F RGIPS++ GPG + AH+ Sbjct: 302 DTSPDAPIVRAALAAC-RQAGYPGEPTGVPYGTDASKFAARGIPSIVLGPGSIAHAHSAH 360 Query: 361 EWVTVSELENASRVYASIAMEVAGS 385 E++ + EL +A +YA IA+ GS Sbjct: 361 EFIPLPELRHAVEIYAQIALSPLGS 385 >C4CRJ6.1 C4CRJ6_9CHLR Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Length = 405 Score = 211 bits (538), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 136/388 (35%), Positives = 199/388 (51%), Gaps = 13/388 (3%) Query: 6 IRSERVIQLLADLIGFQSVNPGGTEGDAAAYVAKVMRKAGCEVELQEIEPGRPNVIARLK 65 I V++ L L+ SVNP G DA A + + AG +E+ E +PN+IARL+ Sbjct: 20 IDEREVVEFLQSLVRIPSVNPPGDVRDAIARCREPLEAAGFAIEILAEEETKPNLIARLE 79 Query: 66 GAGGGRTIILNTHMDVVPAGE--GWSSDPFTLLRKGERVYGRGVMDAKGPLXXXXXXXXX 123 G G ++ N H+DVVP GE W+ PF RVYGRG D K + Sbjct: 80 -RGSGPVLLWNAHVDVVPTGEESAWTYPPFGAEIHDRRVYGRGAGDDKASVTAQIMAALA 138 Query: 124 XXXXXXHLPGDIVLAAVVDEE-AASLGARNL--PDNLHGDLAVIGEATAGNLAVAHRGSI 180 L G +++ V DEE LG++ + DN+ D ++GE T + V +G Sbjct: 139 LARSGVPLRGTLIVNTVADEEIGGGLGSQLVAESDNIRPDFVIVGEQTLNRVCVGEKGGQ 198 Query: 181 RPVLAAEGVSAHSSTPHLGVNAVSLMVRTLMALEDFAEQELTKRLHPLTGQSTLSVTVIN 240 + G +AH + P G NA+ M R ++AL+D EL KR HP S+ V++I Sbjct: 199 GVRVTVYGRAAHGALPWEGANAIEGMARVIVALQDELWPELAKRTHPYFHPSSACVSLIE 258 Query: 241 GGIKESMIPDRCEALIDRRLIPGEAEEDALQEIR----QIIAGLPALGGRVRIDRLVPTT 296 GG+K +++PDRC IDRR++PGE + ++EIR Q + +P L RV ++ Sbjct: 259 GGVKSNVVPDRCTIHIDRRIVPGEKPAEVVEEIRRVAEQAVTRIPGL--RVEVEPAGWGG 316 Query: 297 GVASETRPDHPMVELAAAAIERVYGRRPELTGLTANCDMTHFVKRGIPSVIYGPGDFSVA 356 A+ D P+V+ AA + G LTG + D HF RG P++IYGPGD S+A Sbjct: 317 REATVVAEDSPIVKAMLAA-NQYLGFDTTLTGFSMATDGRHFAARGYPTIIYGPGDPSLA 375 Query: 357 HTIGEWVTVSELENASRVYASIAMEVAG 384 H EWV + E+ +A+R YA + + G Sbjct: 376 HKPDEWVGIDEVLDATRAYALAGLAILG 403 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,209,277,126 Number of extensions: 91393802 Number of successful extensions: 254923 Number of sequences better than 1.0e-05: 2721 Number of HSP's gapped: 250208 Number of HSP's successfully gapped: 2742 Length of query: 385 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 248 Effective length of database: 1,770,017,148 Effective search space: 438964252704 Effective search space used: 438964252704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)