BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0032.p (261 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B5F6.1 Q2B5F6_9BACI 3-oxoacyl-(Acyl carrier protein) reductase 295 2e-78 C5D805.1 C5D805_9BACI Short-chain dehydrogenase/reductase SDR 290 6e-77 C3J576.1 C3J576_9BACI Short-chain dehydrogenase/reductase SDR 286 2e-75 B7YFF2.1 B7YFF2_9BACI Short-chain dehydrogenase/reductase SDR 286 2e-75 Q5L169.1 Q5L169_GEOKA 3-oxoacyl-(Acyl carrier protein) reductase 284 5e-75 >Q2B5F6.1 Q2B5F6_9BACI 3-oxoacyl-(Acyl carrier protein) reductase Length = 260 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 144/261 (55%), Positives = 187/261 (71%), Gaps = 1/261 (0%) Query: 1 MSGQFAGKTALVAAASKGLGRAVAFELARGGAKVALFSRNXXXXXXXXXXXXXXXGMPSL 60 M GKTALVAA+S+GLG+A+A L + GA V L SR+ G Sbjct: 1 MELNLKGKTALVAASSQGLGKAIAKALLQEGANVMLASRDEGKLKEVKSELENLGGEVEF 60 Query: 61 GLQADVCSASDLSRCVEETFSAFGGLHVLVTNAGGPPAGNFESLKEEDWKYAYELTVLSV 120 ++ADV S +D+ V+ FGG+ +LV NAGGPP+G+FE+L +E+W ++EL +LS Sbjct: 61 -IRADVTSENDIKNMVKAAAERFGGIDILVNNAGGPPSGSFETLSDEEWFQSFELNLLSY 119 Query: 121 VRLIRDALPHLKEQGGAIVNLASSSVKQPIPGLTLSNVMRTGVAGLSKTLAEELAPYGIR 180 VR IR+ALP+LK+ GG I+N+ASSS+K+PIPGL LSN RTG+ GLSKTLA+E APYGI Sbjct: 120 VRNIREALPYLKKNGGKIINIASSSIKEPIPGLVLSNTFRTGIVGLSKTLAQEFAPYGIL 179 Query: 181 VNTVAPGRIDTDRVRSLDRIRADKAGVEPEAIKAQSERQIPLGRYGQPDEFARVVAFLCS 240 VNT+APGRIDTDRV+ LD++ +KAGV PE +K +SE+ IPL RYG P+EFA+V FL S Sbjct: 180 VNTLAPGRIDTDRVKHLDQVNGEKAGVSPEEMKEKSEKSIPLNRYGTPEEFAKVAVFLAS 239 Query: 241 DGASYVTGQTLLVDGGMVKSL 261 D SY+TG + LVDGGMVKS+ Sbjct: 240 DANSYMTGSSFLVDGGMVKSI 260 >C5D805.1 C5D805_9BACI Short-chain dehydrogenase/reductase SDR Length = 261 Score = 290 bits (743), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 138/261 (52%), Positives = 187/261 (71%) Query: 1 MSGQFAGKTALVAAASKGLGRAVAFELARGGAKVALFSRNXXXXXXXXXXXXXXXGMPSL 60 M + +GKTALV A+S+GLG+A+A +L GA V + SRN Sbjct: 1 MELRLSGKTALVVASSQGLGKAIARQLVLEGANVMITSRNEEKLQEVEKELRDLHKGQVA 60 Query: 61 GLQADVCSASDLSRCVEETFSAFGGLHVLVTNAGGPPAGNFESLKEEDWKYAYELTVLSV 120 LQAD+ A D+ R V++T +G + +LV NAGGPPAG FE++ +EDW +A+EL +LS Sbjct: 61 HLQADITKAEDIRRLVQKTVDIYGTIDLLVNNAGGPPAGTFETISDEDWYHAFELNLLSY 120 Query: 121 VRLIRDALPHLKEQGGAIVNLASSSVKQPIPGLTLSNVMRTGVAGLSKTLAEELAPYGIR 180 +R+IR+ALP+LK++GG IVN+ASSS+K+PIPGL LSN RTG+ GL+KTLA E APY I Sbjct: 121 IRMIREALPYLKKKGGKIVNIASSSIKEPIPGLLLSNTFRTGIVGLTKTLAFEFAPYNIL 180 Query: 181 VNTVAPGRIDTDRVRSLDRIRADKAGVEPEAIKAQSERQIPLGRYGQPDEFARVVAFLCS 240 +NTVAPGRI T+RV LD+I A+K G+ E ++A+ + IPLGRYG P+EFA VV FL S Sbjct: 181 INTVAPGRIATERVAFLDKINAEKLGISKEEMEARMKSMIPLGRYGTPEEFANVVTFLLS 240 Query: 241 DGASYVTGQTLLVDGGMVKSL 261 + +Y+TGQ+L+VDGGMVK++ Sbjct: 241 EANTYITGQSLIVDGGMVKAI 261 >C3J576.1 C3J576_9BACI Short-chain dehydrogenase/reductase SDR Length = 261 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 141/257 (54%), Positives = 184/257 (71%) Query: 5 FAGKTALVAAASKGLGRAVAFELARGGAKVALFSRNXXXXXXXXXXXXXXXGMPSLGLQA 64 AGKTALVAA+S+GLG+A+A L GA V + SRN + Sbjct: 5 LAGKTALVAASSQGLGKAIARALVLEGANVMITSRNEEKLHEVAEELNSLHKGRVAYTRT 64 Query: 65 DVCSASDLSRCVEETFSAFGGLHVLVTNAGGPPAGNFESLKEEDWKYAYELTVLSVVRLI 124 DV +A D+ + V +T FG + +LV NAGGPPAG FE++ +EDW+YA+EL +LS +RLI Sbjct: 65 DVTNADDIRQLVAKTVETFGTIDLLVNNAGGPPAGTFETVSDEDWQYAFELNLLSYIRLI 124 Query: 125 RDALPHLKEQGGAIVNLASSSVKQPIPGLTLSNVMRTGVAGLSKTLAEELAPYGIRVNTV 184 R+ALP+LK++GG IVN+ASSS+K+PIPGL LSN RTG+ GL+KTLA ELAP GI +NTV Sbjct: 125 REALPYLKKKGGKIVNIASSSIKEPIPGLILSNTFRTGIVGLTKTLAVELAPDGILINTV 184 Query: 185 APGRIDTDRVRSLDRIRADKAGVEPEAIKAQSERQIPLGRYGQPDEFARVVAFLCSDGAS 244 APGRI T+RV LD++ A+K G+ E ++A+ + IPLGRYG P+EFA VV FL S+ S Sbjct: 185 APGRIATERVAFLDKVNAEKLGITKEEMEARMKSAIPLGRYGTPEEFANVVVFLLSEANS 244 Query: 245 YVTGQTLLVDGGMVKSL 261 YVTGQ L+VDGGMVK++ Sbjct: 245 YVTGQALIVDGGMVKAI 261 >B7YFF2.1 B7YFF2_9BACI Short-chain dehydrogenase/reductase SDR Length = 261 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 141/257 (54%), Positives = 184/257 (71%) Query: 5 FAGKTALVAAASKGLGRAVAFELARGGAKVALFSRNXXXXXXXXXXXXXXXGMPSLGLQA 64 AGKTALVAA+S+GLG+A+A L GA V + SRN + Sbjct: 5 LAGKTALVAASSQGLGKAIARALVLEGANVMITSRNEEKLHEVAEELNSLHKGRVAYTRT 64 Query: 65 DVCSASDLSRCVEETFSAFGGLHVLVTNAGGPPAGNFESLKEEDWKYAYELTVLSVVRLI 124 DV +A D+ + V +T FG + +LV NAGGPPAG FE++ +EDW+YA+EL +LS +RLI Sbjct: 65 DVTNADDIRQLVAKTVETFGTIDLLVNNAGGPPAGTFETVSDEDWQYAFELNLLSYIRLI 124 Query: 125 RDALPHLKEQGGAIVNLASSSVKQPIPGLTLSNVMRTGVAGLSKTLAEELAPYGIRVNTV 184 R+ALP+LK++GG IVN+ASSS+K+PIPGL LSN RTG+ GL+KTLA ELAP GI +NTV Sbjct: 125 REALPYLKKKGGKIVNIASSSIKEPIPGLILSNTFRTGIVGLTKTLAVELAPDGILINTV 184 Query: 185 APGRIDTDRVRSLDRIRADKAGVEPEAIKAQSERQIPLGRYGQPDEFARVVAFLCSDGAS 244 APGRI T+RV LD++ A+K G+ E ++A+ + IPLGRYG P+EFA VV FL S+ S Sbjct: 185 APGRIATERVAFLDKVNAEKLGITKEEMEARMKSAIPLGRYGTPEEFANVVVFLLSEANS 244 Query: 245 YVTGQTLLVDGGMVKSL 261 YVTGQ L+VDGGMVK++ Sbjct: 245 YVTGQALIVDGGMVKAI 261 >Q5L169.1 Q5L169_GEOKA 3-oxoacyl-(Acyl carrier protein) reductase Length = 261 Score = 284 bits (727), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 140/257 (54%), Positives = 183/257 (71%) Query: 5 FAGKTALVAAASKGLGRAVAFELARGGAKVALFSRNXXXXXXXXXXXXXXXGMPSLGLQA 64 AGKTALVAA+S+GLG+A+A L G V + SRN + Sbjct: 5 LAGKTALVAASSQGLGKAIARALVLEGTNVMITSRNEEKLHEVAEELNSLHKGRVAYTRT 64 Query: 65 DVCSASDLSRCVEETFSAFGGLHVLVTNAGGPPAGNFESLKEEDWKYAYELTVLSVVRLI 124 DV +A D+ + V +T FG + +LV NAGGPPAG FE++ +EDW+YA+EL +LS +RLI Sbjct: 65 DVTNADDIRQLVAKTVETFGTIDLLVNNAGGPPAGTFETVSDEDWQYAFELNLLSYIRLI 124 Query: 125 RDALPHLKEQGGAIVNLASSSVKQPIPGLTLSNVMRTGVAGLSKTLAEELAPYGIRVNTV 184 R+ALP+LK++GG IVN+ASSS+K+PIPGL LSN RTG+ GL+KTLA ELAP GI +NTV Sbjct: 125 REALPYLKKKGGKIVNIASSSIKEPIPGLILSNTFRTGIVGLTKTLAVELAPDGILINTV 184 Query: 185 APGRIDTDRVRSLDRIRADKAGVEPEAIKAQSERQIPLGRYGQPDEFARVVAFLCSDGAS 244 APGRI T+RV LD++ A+K G+ E ++A+ + IPLGRYG P+EFA VV FL S+ S Sbjct: 185 APGRIATERVAFLDKVNAEKLGITKEEMEARMKSAIPLGRYGTPEEFANVVVFLLSEANS 244 Query: 245 YVTGQTLLVDGGMVKSL 261 YVTGQ L+VDGGMVK++ Sbjct: 245 YVTGQALIVDGGMVKAI 261 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,407,216,058 Number of extensions: 54045135 Number of successful extensions: 242877 Number of sequences better than 1.0e-05: 27427 Number of HSP's gapped: 191277 Number of HSP's successfully gapped: 27502 Length of query: 261 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 128 Effective length of database: 1,807,701,208 Effective search space: 231385754624 Effective search space used: 231385754624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)