BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0029.p (238 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9JL21.1 B9JL21_AGRRK Amino acid ABC transporter 242 2e-62 B7DB94.1 B7DB94_DESSA ABC transporter related protein 241 3e-62 B9JLW1.1 B9JLW1_AGRRK General L-amino acid ABC transporter 235 2e-60 Q6ANW0.1 Q6ANW0_DESPS Probable glutamine ABC transporter, ATP-bi... 235 2e-60 Q394P4.1 Q394P4_BURS3 ABC polar amino acid transporter, ATPase s... 231 4e-59 >B9JL21.1 B9JL21_AGRRK Amino acid ABC transporter Length = 242 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 125/243 (51%), Positives = 165/243 (67%), Gaps = 6/243 (2%) Query: 1 VLQIEQVSKQYHGDPILKEVSFDIHEGERVVIIGPSGSGKSTLLRCVAGLEPINGGQILY 60 +++I VSK Y +LK S ++ GE VV+ GPSGSGKSTL++CV GLEP G I Sbjct: 1 MIEISGVSKFYGNYEVLKNCSVNVDRGEVVVVCGPSGSGKSTLIKCVNGLEPFQKGSIRV 60 Query: 61 NGQDVNGSR----HAKAEIGMVFQSFDLFQHLNAIQNIMLAPRVVRGEKEQEVRSRAVQL 116 +G +V + + + IGMVFQ+F+LF HL I N+MLA ++V G E +++A+QL Sbjct: 61 HGIEVGDPKTDLPNLRTRIGMVFQNFELFAHLTIIDNLMLAQKIVLGRSETSAKTKAMQL 120 Query: 117 LERVRLRDRAEHYPEQLSXXXXXXXXXXXXLAMNPKLMLFDEPTSALDPEMTAEVLDVIS 176 L+RV L D A YP QLS LAM+P MLFDEPTSALDPEM +EVLDV++ Sbjct: 121 LDRVELADHASKYPSQLSGGQQQRVAIARALAMDPLAMLFDEPTSALDPEMISEVLDVMT 180 Query: 177 DLARDGMTVVIVTHEMEFARRVGDRIIFMDQGKVVEDLPSSQLGEAGKH-PRLKQFLNQI 235 LA+DGMT+++VTHEM FARRV R+IF+DQG++VED PS + AGKH PR + FL +I Sbjct: 181 GLAKDGMTMMVVTHEMGFARRVATRVIFIDQGEIVEDRPSEEF-FAGKHNPRTEAFLGKI 239 Query: 236 TQY 238 Q+ Sbjct: 240 LQH 242 >B7DB94.1 B7DB94_DESSA ABC transporter related protein Length = 245 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 4/239 (1%) Query: 1 VLQIEQVSKQYHGDPILKEVSFDIHEGERVVIIGPSGSGKSTLLRCVAGLEPINGGQILY 60 +++I+ V K + L +VS DI +GE+VVIIGPSGSGKSTLLR + LE IN G I+ Sbjct: 6 IIEIKNVYKFFGDLAALSDVSLDIKQGEKVVIIGPSGSGKSTLLRSINRLEEINKGSIVV 65 Query: 61 NGQDV----NGSRHAKAEIGMVFQSFDLFQHLNAIQNIMLAPRVVRGEKEQEVRSRAVQL 116 +G DV N + E+GMVFQSF+LF H ++N+ +AP ++G +++E ++ AV L Sbjct: 66 DGLDVHDKENDINSIRQELGMVFQSFNLFPHKTVLENLTMAPIRLKGMEQEEAKAIAVDL 125 Query: 117 LERVRLRDRAEHYPEQLSXXXXXXXXXXXXLAMNPKLMLFDEPTSALDPEMTAEVLDVIS 176 L++V +R++A YP +LS LAMNPK+MLFDEPTSALDPEM EVLDV+ Sbjct: 126 LKKVGIREKANVYPSKLSGGQQQRVAIARALAMNPKIMLFDEPTSALDPEMIGEVLDVMK 185 Query: 177 DLARDGMTVVIVTHEMEFARRVGDRIIFMDQGKVVEDLPSSQLGEAGKHPRLKQFLNQI 235 +LAR+GMT+V+VTHEM FAR V DRI+FM+ G+++ P + HPRLKQFL+QI Sbjct: 186 NLAREGMTMVVVTHEMGFAREVADRIVFMEDGRIIACAPPEEFFNNADHPRLKQFLDQI 244 >B9JLW1.1 B9JLW1_AGRRK General L-amino acid ABC transporter Length = 254 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 4/239 (1%) Query: 1 VLQIEQVSKQYHGDPILKEVSFDIHEGERVVIIGPSGSGKSTLLRCVAGLEPINGGQILY 60 +L+I + K + ILK S ++ + VV+IGPSGSGKSTLLRCV LEP +GG I + Sbjct: 14 LLEIIGIDKSFGPARILKTCSLNVFRKQTVVVIGPSGSGKSTLLRCVNLLEPADGGNIFF 73 Query: 61 NGQDVN----GSRHAKAEIGMVFQSFDLFQHLNAIQNIMLAPRVVRGEKEQEVRSRAVQL 116 +G D+ + + +IGMVFQ+F+LFQHL+A +NIMLAP V G + + A+QL Sbjct: 74 DGNDITRDLRNASKIRRDIGMVFQNFELFQHLSAAENIMLAPMKVSGISKLDAHDIAMQL 133 Query: 117 LERVRLRDRAEHYPEQLSXXXXXXXXXXXXLAMNPKLMLFDEPTSALDPEMTAEVLDVIS 176 LE+VR+ ++A+ +P++LS LAM PKLML+DEPTSALDPEM EVLDV++ Sbjct: 134 LEKVRIPEKADFFPDELSGGQQQRVAIARALAMKPKLMLYDEPTSALDPEMIREVLDVMA 193 Query: 177 DLARDGMTVVIVTHEMEFARRVGDRIIFMDQGKVVEDLPSSQLGEAGKHPRLKQFLNQI 235 DL+ DGMT V+VTHEM FARR D+I+FM+ G+V+E+ PS Q + R + FL QI Sbjct: 194 DLSADGMTSVVVTHEMGFARRAADQIVFMENGEVIENAPSEQFFGGTVNDRARLFLGQI 252 >Q6ANW0.1 Q6ANW0_DESPS Probable glutamine ABC transporter, ATP-binding protein Length = 242 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 120/242 (49%), Positives = 159/242 (65%), Gaps = 4/242 (1%) Query: 1 VLQIEQVSKQYHGDPILKEVSFDIHEGERVVIIGPSGSGKSTLLRCVAGLEPINGGQILY 60 ++ V+K Y +LK+++ I EGE VV+ GPSGSGKSTL+RC++ LEPI G I+ Sbjct: 1 MISFTDVNKWYGDFRVLKDINLTIAEGEVVVVCGPSGSGKSTLIRCISRLEPIQRGHIVV 60 Query: 61 NGQDVNGSRHA----KAEIGMVFQSFDLFQHLNAIQNIMLAPRVVRGEKEQEVRSRAVQL 116 +G DVN + +AEIG VFQ F+L+ H+ ++NI LAPR+VRG + + L Sbjct: 61 DGHDVNDLKTNLTLLRAEIGFVFQQFNLYPHMTVLENITLAPRLVRGMTSGDAEKLGMDL 120 Query: 117 LERVRLRDRAEHYPEQLSXXXXXXXXXXXXLAMNPKLMLFDEPTSALDPEMTAEVLDVIS 176 L++V + DRA HYP QLS LAM P++MLFDEPTSALDPEM EVLDV+ Sbjct: 121 LKKVDIPDRANHYPSQLSGGQQQRVAIARGLAMRPRIMLFDEPTSALDPEMINEVLDVMR 180 Query: 177 DLARDGMTVVIVTHEMEFARRVGDRIIFMDQGKVVEDLPSSQLGEAGKHPRLKQFLNQIT 236 +LAR+GMT+V VTHEM FAR V DRIIFMD+G +VE + E +H R K FL++I Sbjct: 181 ELAREGMTMVCVTHEMGFAREVADRIIFMDEGNLVEQNSPHEFFENPQHGRTKDFLSKIL 240 Query: 237 QY 238 + Sbjct: 241 SH 242 >Q394P4.1 Q394P4_BURS3 ABC polar amino acid transporter, ATPase subunit EC=3.6.3.25 Length = 242 Score = 231 bits (589), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 159/240 (66%), Gaps = 4/240 (1%) Query: 1 VLQIEQVSKQYHGDPILKEVSFDIHEGERVVIIGPSGSGKSTLLRCVAGLEPINGGQILY 60 +++ + VSK + P+LK + I GE VV+IGPSGSGKST+LRC+ LE I GG++L Sbjct: 3 MIEFQNVSKSFGHVPVLKHIDLKIDAGEVVVVIGPSGSGKSTMLRCINALEKITGGELLV 62 Query: 61 NGQDVNGS----RHAKAEIGMVFQSFDLFQHLNAIQNIMLAPRVVRGEKEQEVRSRAVQL 116 +GQ V G+ R+ + E GMVFQ F+LF + A++N+M P VRG + R +A+ L Sbjct: 63 DGQSVRGNATTIRNIRLEAGMVFQQFNLFPQMTALENVMFGPIQVRGASRADARDQAMAL 122 Query: 117 LERVRLRDRAEHYPEQLSXXXXXXXXXXXXLAMNPKLMLFDEPTSALDPEMTAEVLDVIS 176 L++V L RA H+P +LS LA+ P+LMLFDEPTSALDPE+ EVL V+ Sbjct: 123 LDKVGLESRANHFPSELSGGQQQRVAIARALAIRPRLMLFDEPTSALDPELRHEVLKVMQ 182 Query: 177 DLARDGMTVVIVTHEMEFARRVGDRIIFMDQGKVVEDLPSSQLGEAGKHPRLKQFLNQIT 236 DLA +GMT+++VTHE+ FA+RVG R++FMDQG + ED L + PRLK+FL ++ Sbjct: 183 DLATEGMTMIVVTHEIGFAKRVGTRLLFMDQGGIAEDGHPVDLIDRPPTPRLKEFLKHVS 242 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,270,554,417 Number of extensions: 47835584 Number of successful extensions: 571651 Number of sequences better than 1.0e-05: 89107 Number of HSP's gapped: 426731 Number of HSP's successfully gapped: 95828 Length of query: 238 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 106 Effective length of database: 1,817,122,223 Effective search space: 192614955638 Effective search space used: 192614955638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)