BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0028.p (238 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9CL49.1 A9CL49_AGRT5 ABC transporter, membrane spanning protein 223 1e-56 B9JLW2.1 B9JLW2_AGRRK Amino acid ABC transporter 220 7e-56 B5XSB2.1 B5XSB2_KLEP3 Amino acid ABC transporter, permease protein 203 1e-50 B9JL24.1 B9JL24_AGRRK Amino acid ABC transporter 197 8e-49 Q1MAR9.1 Q1MAR9_RHIL3 Putative transmembrane component of ABC tr... 190 9e-47 >A9CL49.1 A9CL49_AGRT5 ABC transporter, membrane spanning protein Length = 242 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 116/227 (51%), Positives = 154/227 (67%), Gaps = 1/227 (0%) Query: 7 VWAYLGSRAFLDGAINTMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIWIFRGI 66 V+ Y+ S AF GA+ T+ +T+ S ++ G I+AL + SR + LQ Y+W+FRG Sbjct: 6 VFDYVFSPAFFHGALLTLVITVTSLFFGMIAGLIVALLQESRIRPLQIFTLVYLWLFRGT 65 Query: 67 PVMVQLIFVYTALPQFGIRLTGFQSAFVALALNEAAYMAEIVRSGLASVGKGQHRAANAL 126 PV+ Q+IF+Y LP FG+ L+ F SA +AL+LNE AYMAEI+RSGL +V KGQ A AL Sbjct: 66 PVLFQIIFIYNVLPTFGVMLSAFVSAVIALSLNEGAYMAEIIRSGLQAVKKGQRTAGLAL 125 Query: 127 GMNNWQRMRYVVLPQAFRVIVPPTANQFIGMLKTSAMASVVGYTDLLLTAQQTASANFDY 186 GM + M Y+V+PQA R+++PPT NQ IGMLKTSA+ SVV +LLL A QTAS+NF Y Sbjct: 126 GMTRFAVMCYIVIPQAARIVLPPTGNQMIGMLKTSALVSVVAVEELLLVANQTASSNFKY 185 Query: 187 VDTLIAAVIYYLAFTALFTLVQSYLERRMDITRSRNRKSPLFSLMKR 233 + L AA IYYLA T++F Q LER +D R R ++ + SLM R Sbjct: 186 FEALTAAGIYYLALTSIFMGFQYLLERALDRKRPRGKRRSV-SLMAR 231 >B9JLW2.1 B9JLW2_AGRRK Amino acid ABC transporter Length = 238 Score = 220 bits (561), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 113/218 (51%), Positives = 148/218 (67%) Query: 5 EGVWAYLGSRAFLDGAINTMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIWIFR 64 E V+ YL S AF GA+ T+ +T+VS +++G +IAL + + + ++ Y+W+FR Sbjct: 4 ELVFDYLLSPAFFHGAVLTLLITIVSLFFGIIVGLVIALLQETELRAVKAATLVYLWLFR 63 Query: 65 GIPVMVQLIFVYTALPQFGIRLTGFQSAFVALALNEAAYMAEIVRSGLASVGKGQHRAAN 124 G PV+ Q+IF+Y LP FGIRL+ SA +AL+LNE AYMAEI+RSGL +V KGQ A Sbjct: 64 GTPVLFQIIFIYNVLPGFGIRLSAILSAVLALSLNEGAYMAEILRSGLHAVKKGQRTAGL 123 Query: 125 ALGMNNWQRMRYVVLPQAFRVIVPPTANQFIGMLKTSAMASVVGYTDLLLTAQQTASANF 184 ALGM MR+VV+PQA R+++P NQ IGMLKTSA+ SVV +LLL A QTASANF Sbjct: 124 ALGMTRASVMRFVVMPQAARIVLPAVGNQMIGMLKTSALVSVVAVEELLLVANQTASANF 183 Query: 185 DYVDTLIAAVIYYLAFTALFTLVQSYLERRMDITRSRN 222 Y + L AA IYYLA T +F + QS LER +D R R Sbjct: 184 RYFEALSAAGIYYLALTTIFMVFQSILERSLDPKRGRR 221 >B5XSB2.1 B5XSB2_KLEP3 Amino acid ABC transporter, permease protein Length = 241 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 113/230 (49%), Positives = 155/230 (67%), Gaps = 4/230 (1%) Query: 7 VWAYLGSRAFLDGAINTMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIWIFRGI 66 +W Y S F+ GA T+ +TL S + V+LG ++AL + + ++ +GLA Y+W+FRG Sbjct: 6 MWQYFLSPEFIRGAWMTLLITLCSLLCGVVLGLVLALLQEAPFRAGKGLAFFYLWLFRGT 65 Query: 67 PVMVQLIFVYTALPQFGIRLTGFQSAFVALALNEAAYMAEIVRSGLASVGKGQHRAANAL 126 PV+ Q+IFVY LP FG+R + F A +AL+LNE AYMAEI+RSGL +V GQ A AL Sbjct: 66 PVLFQIIFVYNVLPGFGLRFSAFTCAVLALSLNEGAYMAEILRSGLQAVKSGQRTAGMAL 125 Query: 127 GMNNWQRMRYVVLPQAFRVIVPPTANQFIGMLKTSAMASVVGYTDLLLTAQQTASANFDY 186 GM + Q MR +VLPQA R+++PP NQ I MLK+SA+ SV+ +LLL A Q ASA+F Y Sbjct: 126 GMTHGQIMRKIVLPQAARIVLPPMGNQMISMLKSSALVSVIAVQELLLVANQAASASFRY 185 Query: 187 VDTLIAAVIYYLAFTALFTLVQSYLERRMDI----TRSRNRKSPLFSLMK 232 + L AA IYYL T+LF + QS+LER +D ++S+ R + LF L K Sbjct: 186 FEALCAAGIYYLLLTSLFMIFQSWLERVLDPRQRRSKSQKRLTRLFKLPK 235 >B9JL24.1 B9JL24_AGRRK Amino acid ABC transporter Length = 231 Score = 197 bits (500), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 102/217 (47%), Positives = 146/217 (67%), Gaps = 1/217 (0%) Query: 6 GVWAYLGSRAFLDGAINTMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIWIFRG 65 G + YL + L G T+ LT+VS ++LGF++AL + S ++L + LA YIW+FRG Sbjct: 8 GFFGYLFNPFILGGVFTTIWLTVVSLTAGLILGFVLALMRRSPFRLAKTLAKIYIWLFRG 67 Query: 66 IPVMVQLIFVYTALPQFGIRLTGFQSAFVALALNEAAYMAEIVRSGLASVGKGQHRAANA 125 P++VQLI +YTALPQFGIR T ++A + LALNEAAY+AEI+R+G+ +V +GQ RAA A Sbjct: 68 TPLLVQLIALYTALPQFGIRFTVIEAALIGLALNEAAYLAEIIRAGIEAVPEGQARAARA 127 Query: 126 LGMNNWQRMRYVVLPQAFRVIVPPTANQFIGMLKTSAMASVVGYTDLLLTAQQTASANFD 185 LGM Q MR++V+PQAF+VI+PP N G+LKT+++ SV+ +LL Q +F Sbjct: 128 LGMTERQIMRHIVMPQAFKVIIPPLGNSVNGLLKTTSVTSVISMEELLRRTQVLIQEHFM 187 Query: 186 YVDTLIAAVIYYLAFTALFTLVQSYLERRM-DITRSR 221 ++ A IYYL T L+ VQ+++E+R T SR Sbjct: 188 VLELFAVAAIYYLLLTTLWDFVQNHIEKRFGQATNSR 224 >Q1MAR9.1 Q1MAR9_RHIL3 Putative transmembrane component of ABC transporter Length = 230 Score = 190 bits (483), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 100/216 (46%), Positives = 142/216 (65%) Query: 6 GVWAYLGSRAFLDGAINTMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIWIFRG 65 G + YL + L G T+ LT+VS I ++LGF +AL + S ++ +A +YIW+FRG Sbjct: 8 GFFGYLFNPFILGGVFTTVWLTVVSLIAGLILGFALALMRRSSRRVPYYIAKAYIWLFRG 67 Query: 66 IPVMVQLIFVYTALPQFGIRLTGFQSAFVALALNEAAYMAEIVRSGLASVGKGQHRAANA 125 P++VQLI +YTALP FGI+ T ++A + LALNEAAY+AEI+R+G+ +V +GQ RAA A Sbjct: 68 TPLLVQLIAIYTALPLFGIKFTVIEAALLGLALNEAAYLAEIIRAGIEAVPEGQTRAARA 127 Query: 126 LGMNNWQRMRYVVLPQAFRVIVPPTANQFIGMLKTSAMASVVGYTDLLLTAQQTASANFD 185 LGM Q MRY+V+PQAF+VIVPP N G+LKT+++ SV+ +LL Q F Sbjct: 128 LGMTERQIMRYIVMPQAFKVIVPPLGNSVNGLLKTTSVTSVISVEELLRRTQVLIQERFM 187 Query: 186 YVDTLIAAVIYYLAFTALFTLVQSYLERRMDITRSR 221 ++ A IYYL T L+ QS++E+R+ SR Sbjct: 188 VLELFAVAAIYYLLLTTLWDFFQSHIEKRLGQAGSR 223 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,196,651,685 Number of extensions: 42030673 Number of successful extensions: 183680 Number of sequences better than 1.0e-05: 8102 Number of HSP's gapped: 178535 Number of HSP's successfully gapped: 8199 Length of query: 238 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 106 Effective length of database: 1,817,122,223 Effective search space: 192614955638 Effective search space used: 192614955638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)