BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0027.p (294 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9CL48.1 A9CL48_AGRT5 ABC transporter, substrate binding protein... 246 2e-63 B5XSB1.1 B5XSB1_KLEP3 Amino acid ABC transporter, periplasmic am... 239 2e-61 B9JLW3.1 B9JLW3_AGRRK Amino acid ABC transporter 229 3e-58 A7A4J4.1 A7A4J4_BIFAD Putative uncharacterized protein 143 2e-32 A4AK10.1 A4AK10_9ACTN Secreted protein 142 5e-32 >A9CL48.1 A9CL48_AGRT5 ABC transporter, substrate binding protein (Amino acid) Length = 269 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 161/240 (67%), Gaps = 2/240 (0%) Query: 56 LVEKGVLTYGTAATFPPFEYMLNNEFTGFDIELGQAIAKEMGVEAKIQSMNFDGLIPALQ 115 LVEKG LTYG AATF PFE+ ++ TGFDI+L A++K++ EAK +M F GLIPAL Sbjct: 29 LVEKGALTYGVAATFAPFEFQKGDQLTGFDIDLISALSKKLKAEAKPMNMEFKGLIPALI 88 Query: 116 GKRIDIINSAMYIKPEREEQVDFIPYMGLADSIVVKSGNPHGIKSMDD-LSGYTVAVTRG 174 G RID+INSAMYI P R EQVDFIPY+ + + ++V++GNP I DD L G TV+VT G Sbjct: 89 GGRIDLINSAMYINPARSEQVDFIPYLKIGNMVLVQAGNPKKITGRDDSLCGKTVSVTLG 148 Query: 175 AVEEINVREHNVKLKQADKPEIKILALPTANDAVLATEQGRADAFLHSSPGAAYLQEEKP 234 ++E R + + K +K+L PTA D+ L QGRADA S+PGA LQ P Sbjct: 149 GIQESQARADDTRCKAKGLEGVKVLTFPTAQDSALTLRQGRADATFDSTPGAVVLQSSVP 208 Query: 235 GVFEIAG-SFGADTKIGIAVRKGDTETKTAIEAALKKVVENGTYKQLMEKYHLPAEMSYF 293 GV+E G F ++T IG+A RKGD + AI+ AL ++V +GTYK L+EK+ LPA ++ F Sbjct: 209 GVYETVGEEFESNTSIGMATRKGDAAVQKAIKDALGEIVADGTYKSLIEKWKLPASVAIF 268 >B5XSB1.1 B5XSB1_KLEP3 Amino acid ABC transporter, periplasmic amino acid-binding protein Length = 270 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 157/239 (65%), Gaps = 2/239 (0%) Query: 57 VEKGVLTYGTAATFPPFEYMLNNEFTGFDIELGQAIAKEMGVEAKIQSMNFDGLIPALQG 116 + KG LTYGTAATF PFEY+ + TGFDI+L A++KE+ + M F GLIPALQG Sbjct: 32 IAKGQLTYGTAATFMPFEYVKAGKLTGFDIDLINALSKEIQLTPAPMPMEFKGLIPALQG 91 Query: 117 KRIDIINSAMYIKPEREEQVDFIPYMGLADSIVVKSGNPHGIKSMD-DLSGYTVAVTRGA 175 KR+DIINSAMY+ P R EQVDF+PY+ + +VV+ GNP I D L G +AVT G Sbjct: 92 KRLDIINSAMYVNPTRAEQVDFVPYLKIGSRVVVRKGNPANITGRDLSLCGKNIAVTLGG 151 Query: 176 VEEINVREHNVKLKQADKPEIKILALPTANDAVLATEQGRADAFLHSSPGAAYLQEEKPG 235 +EE R N + +A KP I ++ P A D+ +A QGRADA S+PG L EK G Sbjct: 152 IEESQARADNQRCVEAKKPAINVMTFPAATDSAVAVAQGRADAEFLSTPGTVALFTEKAG 211 Query: 236 VFEIAGS-FGADTKIGIAVRKGDTETKTAIEAALKKVVENGTYKQLMEKYHLPAEMSYF 293 +FE G+ F A+T I AVRKGDT T+ +E L+++V+NGTY QL++K++ P +S F Sbjct: 212 MFEAVGAEFEANTHIAFAVRKGDTATQALLEQGLQRLVKNGTYTQLIKKWNFPDSVSLF 270 >B9JLW3.1 B9JLW3_AGRRK Amino acid ABC transporter Length = 269 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 123/252 (48%), Positives = 164/252 (65%), Gaps = 3/252 (1%) Query: 45 QETASAAAP-SFLVEKGVLTYGTAATFPPFEYMLNNEFTGFDIELGQAIAKEMGVEAKIQ 103 Q +A P S LVE G +TYG AATF PFE+ + +GFDI+L A+A ++ + Sbjct: 17 QSVIAADLPKSGLVENGSITYGVAATFAPFEFQKDGVLSGFDIDLIAALAAKLSAKPVPM 76 Query: 104 SMNFDGLIPALQGKRIDIINSAMYIKPEREEQVDFIPYMGLADSIVVKSGNPHGIKSMDD 163 +M F GLIPAL RIDIINSAMYI +R EQVDFIPYM + + ++V++GNP I DD Sbjct: 77 NMEFKGLIPALLSSRIDIINSAMYINDKRSEQVDFIPYMKIGNQVIVQAGNPAKITGRDD 136 Query: 164 -LSGYTVAVTRGAVEEINVREHNVKLKQADKPEIKILALPTANDAVLATEQGRADAFLHS 222 L G T+AVT G ++E R + + K + +L LPTA D+ L+ QGRADA S Sbjct: 137 TLCGKTIAVTLGGIQENQARADDTRCKAKGLSGVTVLTLPTAQDSALSLRQGRADAEYDS 196 Query: 223 SPGAAYLQEEKPGVFEIAGS-FGADTKIGIAVRKGDTETKTAIEAALKKVVENGTYKQLM 281 +PGA LQ PGV+E+ G F ++T IGIA RKGDT + +I+AAL ++V +GTYK L+ Sbjct: 197 TPGAVVLQAAVPGVYEVVGGEFESNTSIGIATRKGDTALQASIKAALAEIVADGTYKSLI 256 Query: 282 EKYHLPAEMSYF 293 EK+ LPA +S F Sbjct: 257 EKWKLPASVSIF 268 >A7A4J4.1 A7A4J4_BIFAD Putative uncharacterized protein Length = 311 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/295 (31%), Positives = 149/295 (50%), Gaps = 14/295 (4%) Query: 2 MMKNTKXXXXXXXXXXXXXXXXXXGTNGANGGQASSPAGSSNP----------QETASAA 51 MM+N K GT+ QAS + SS+ E + Sbjct: 1 MMRNLKGWAALALSAAMVVSMGACGTSDKTDSQASVDSNSSSTTGYDVSGVKKDEKIAKM 60 Query: 52 APSFLVEKGVLTYGTAATFPPFEYMLNNEFT--GFDIELGQAIAKEMGVEAKIQSMNFDG 109 PS + + G LT G ++ P E++ + T GFD+++ +A+AK G+EA Q+ NFD Sbjct: 61 LPSSVTKDGKLTVGMDTSYAPAEFLAADGKTPVGFDVDIVKALAKTFGLEADPQTSNFDS 120 Query: 110 LIPALQGKRIDIINSAMYIKPEREEQVDFIPYMGLADSIVVKSGNPHGIKSMDDLSGYTV 169 +IP++ G + DI S+ I PER + VDF+ + VVK GNP I + DL G + Sbjct: 121 IIPSI-GSKYDIGVSSFTITPERMKAVDFVSMFKAGSTWVVKKGNPGKIDT-SDLCGLKI 178 Query: 170 AVTRGAVEEINVREHNVKLKQADKPEIKILALPTANDAVLATEQGRADAFLHSSPGAAYL 229 AV G +E V + + K +K +I+IL+ D G+AD F SP A Y Sbjct: 179 AVQTGTTQEEEVNKGAEQCKADNKLDIQILSNKLQTDVTTNVVTGKADVFYADSPVAGYA 238 Query: 230 QEEKPGVFEIAGSFGADTKIGIAVRKGDTETKTAIEAALKKVVENGTYKQLMEKY 284 + G E G TK +A++KGD++T A++AA++K++++GTY ++++ + Sbjct: 239 ISQTDGQLEALGEDVGVTKEAVAIKKGDSDTAKAVQAAMQKLMDDGTYMKILKHW 293 >A4AK10.1 A4AK10_9ACTN Secreted protein Length = 305 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 137/243 (56%), Gaps = 9/243 (3%) Query: 50 AAAPSFLVEKGVLTYGTAATFPPFEYMLNNEFT--GFDIELGQAIAKEMGVEAKIQSMNF 107 A P + E GV+T GT A +PP+E +++ T G D +L AI +GVE K+++M F Sbjct: 52 AMLPDRIQESGVITVGTEAYYPPYESFADDDSTIIGLDPDLLHAIGDVLGVEIKLENMAF 111 Query: 108 DGLIPALQGKRIDIINSAMYIKPEREEQVDFIPYMGLADSIVVKSGNPHGIKSMDDLSGY 167 DGL+PAL KR+DI+++A+ I +R E+ DF+ Y I V + NP G+K+ DDL G Sbjct: 112 DGLLPALDAKRLDIVSAALTINADRVEKYDFVTYFNTPQGITVPADNPKGVKTRDDLCGL 171 Query: 168 TVAVTRGAVEEINVREHNVKLKQADKPEIKILALPTANDAVLATEQGRADAFLHSSPGAA 227 VAV + + + N L AD E+ I A + DA+ + GRADA + P AA Sbjct: 172 NVAVLDASHQLSLLEAMNADLC-ADN-EMTITAFTSDADALQQLQSGRADASISQYPVAA 229 Query: 228 YLQEE--KPGVFEIA--GSFGADTKIGIAVRKGDTETKTAIEAALKKVVENGTYKQLMEK 283 + +F SFG + +G RK D++ + A++AA+ ++E+G Y+++++ Sbjct: 230 FSAANFGNGKIFTAISDASFGP-SLLGEVFRKDDSQLRDAVQAAINDLIESGVYEEVLDA 288 Query: 284 YHL 286 + L Sbjct: 289 HGL 291 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.130 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,645,398,746 Number of extensions: 66751651 Number of successful extensions: 193161 Number of sequences better than 1.0e-05: 5522 Number of HSP's gapped: 187160 Number of HSP's successfully gapped: 5541 Length of query: 294 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 160 Effective length of database: 1,798,280,193 Effective search space: 287724830880 Effective search space used: 287724830880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)