BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0026.p (213 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A5UX34.1 A5UX34_ROSS1 Transcriptional regulator, GntR family 121 4e-26 A7NM75.1 A7NM75_ROSCS Transcriptional regulator, GntR family 118 3e-25 Q3AFM3.1 Q3AFM3_CARHZ Transcriptional regulator, GntR family 113 1e-23 A5D655.1 A5D655_PELTS Transcriptional regulator 112 3e-23 B1I1R6.1 B1I1R6_DESAP Transcriptional regulator, GntR family 111 3e-23 >A5UX34.1 A5UX34_ROSS1 Transcriptional regulator, GntR family Length = 235 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/205 (40%), Positives = 118/205 (57%), Gaps = 6/205 (2%) Query: 1 VYSILKQWVLSGELAPGERIDQDAVASRLGVSKMPVRSALDKLAAQDLVLLHSHRGVTVT 60 V + L+ +LSGELAPG R+DQ+ +A R GVS +P+R AL +L + LV + HRGV V Sbjct: 13 VMARLRDMILSGELAPGSRLDQNDLARRFGVSLVPLREALARLQSSGLVRIVPHRGVFVE 72 Query: 61 PLSAQHLEDIYLVRCNLEGLAVQLATELLKPEDVTLLNNMIQKQEDLANHRNPDTEAILA 120 LS + L DIY VR LE LA +LA L D+ L+ + + E A + D EA L Sbjct: 73 SLSVEELLDIYQVREALEDLASRLAAPRLSAADLATLDRLKIEMEQTA--KIDDFEAFLD 130 Query: 121 ANREFHLFIYSLAQRPVLLSIIERLWEQSERYRRI-LLIQPGMVDGSLNEHRRLVELMTH 179 +R+FH IY A R LL ++ +LW+ S RYRR L P + SL E + ++E H Sbjct: 131 LHRDFHFTIYRAAGRRHLLQLLTQLWDLSARYRRFQLYAFPERMHTSLFEIQAILE-ACH 189 Query: 180 RQAEEASRFLVEHNRKTQQVVLSVM 204 R+ +A LV + K Q V+S++ Sbjct: 190 RRDPDALALLVRY--KVHQTVVSLL 212 >A7NM75.1 A7NM75_ROSCS Transcriptional regulator, GntR family Length = 245 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/205 (40%), Positives = 117/205 (57%), Gaps = 6/205 (2%) Query: 1 VYSILKQWVLSGELAPGERIDQDAVASRLGVSKMPVRSALDKLAAQDLVLLHSHRGVTVT 60 V + L+ +LSGELAPG R+DQ+ +A R GVS +P+R AL +L ++ LV + HRGV V Sbjct: 13 VMARLRDMILSGELAPGSRLDQNELARRFGVSLVPLREALARLQSRGLVRIVPHRGVFVE 72 Query: 61 PLSAQHLEDIYLVRCNLEGLAVQLATELLKPEDVTLLNNMIQKQEDLANHRNPDTEAILA 120 LS + L DIY VR LE LA +LA L D+ L+ + + E A D +A L Sbjct: 73 SLSVEELLDIYQVREALEELAARLAAPRLTVADLATLDRLKIEMEQTAT--IDDFDAFLD 130 Query: 121 ANREFHLFIYSLAQRPVLLSIIERLWEQSERYRRILLIQ-PGMVDGSLNEHRRLVELMTH 179 +REFH IY A R L+ +I +LW+ S RYRR L P SL E + +++ H Sbjct: 131 LHREFHFTIYRAAGRRHLVQLIAQLWDLSARYRRFQLYAFPERARASLFEIQAILD-ACH 189 Query: 180 RQAEEASRFLVEHNRKTQQVVLSVM 204 R+ +A +V + K Q V+S++ Sbjct: 190 RRDPDALACMVRY--KVHQTVVSLL 212 >Q3AFM3.1 Q3AFM3_CARHZ Transcriptional regulator, GntR family Length = 229 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 114/202 (56%), Gaps = 2/202 (0%) Query: 1 VYSILKQWVLSGELAPGERIDQDAVASRLGVSKMPVRSALDKLAAQDLVLLHSHRGVTVT 60 V+ L++ +++G L PGER+ + +A LGVS+ PVR A+ KL + V++ +G V Sbjct: 19 VFETLREAIINGVLKPGERLMEVQLAEELGVSRTPVREAIRKLELEGFVVMIPRKGAYVA 78 Query: 61 PLSAQHLEDIYLVRCNLEGLAVQLATELLKPEDVTLLNNMIQKQEDLANHRNPDTEAILA 120 +S + + D++ VR LE LA LA E + E++ L ++ +Q+ LA + E I+ Sbjct: 79 GISLKDVADVFEVRAALESLAAGLAAERITDEEIEELERVLVQQQSLAE--SDRLEDIIR 136 Query: 121 ANREFHLFIYSLAQRPVLLSIIERLWEQSERYRRILLIQPGMVDGSLNEHRRLVELMTHR 180 A+ +FH +Y ++ L+ I+ L EQ +R+R L QPG + +L EH+ +VE + R Sbjct: 137 ADTDFHEVLYRASRNERLIQIVSHLREQIQRFRTASLSQPGRLRLALEEHKEIVEAIAER 196 Query: 181 QAEEASRFLVEHNRKTQQVVLS 202 E+A EH +Q +++ Sbjct: 197 NVEKAQALAREHIENAEQSMIN 218 >A5D655.1 A5D655_PELTS Transcriptional regulator Length = 226 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 109/204 (53%), Gaps = 3/204 (1%) Query: 1 VYSILKQWVLSGELAPGERIDQDAVASRLGVSKMPVRSALDKLAAQDLVLLHSHRGVTVT 60 V+ L++ ++ G L PGER+ + +A +GVS+ PVR A+ KL + V++ +G V Sbjct: 21 VFESLREAIILGRLKPGERLMEIQLAEEMGVSRTPVREAIRKLELEGFVVMVPRKGAYVA 80 Query: 61 PLSAQHLEDIYLVRCNLEGLAVQLATELLKPEDVTLLNNMIQKQEDLANHRNPDTEAILA 120 +S + + D++ VR LEGLA LA E + E++ L + K ++ D AI+ Sbjct: 81 GISLKDIADVFEVRAALEGLAAGLAAERITEEEMDELERSLLK---ISTGVEEDFNAIVE 137 Query: 121 ANREFHLFIYSLAQRPVLLSIIERLWEQSERYRRILLIQPGMVDGSLNEHRRLVELMTHR 180 + FH IY ++ L+SII L EQ R+R L QPG +L+EH+ +VE + R Sbjct: 138 GDSSFHDLIYKASRNQRLVSIITHLKEQIHRFRMTSLSQPGRTKIALDEHKMIVEAICDR 197 Query: 181 QAEEASRFLVEHNRKTQQVVLSVM 204 E A EH +Q +L+ + Sbjct: 198 NVELAQTLAREHVENAEQSLLNAL 221 >B1I1R6.1 B1I1R6_DESAP Transcriptional regulator, GntR family Length = 233 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 114/214 (53%), Gaps = 3/214 (1%) Query: 1 VYSILKQWVLSGELAPGERIDQDAVASRLGVSKMPVRSALDKLAAQDLVLLHSHRGVTVT 60 VY L++ +L G APG+R+ + +A+ LGVS+ PVR AL L + LV H G V Sbjct: 22 VYENLRRALLEGRYAPGDRLVERKLAAELGVSRTPVREALRALEQEGLVYHMPHSGAVVA 81 Query: 61 PLSAQHLEDIYLVRCNLEGLAVQLATELLKPEDVTLLNNMIQKQEDLANHRNPDTEAILA 120 L +Q +++IY +R LEGLA ++A E + P + L ++++ E LA+ DT + + Sbjct: 82 RLDSQEVQEIYRIRAVLEGLAARMAAERISPGRLKQLEALLEQIEALAD--RGDTCQLES 139 Query: 121 ANREFHLFIYSLAQRPVLLSIIERLWEQSERYRRILLIQPGMVDGSLNEHRRLVELMTHR 180 +REF+ IY A+ P L ++ L + + R+ PG + + +EHRRLV + R Sbjct: 140 VHREFNHVIYKAAESPRLYDMVTSLADHIDLCVRVGYAHPGRLAEATDEHRRLVAAIRLR 199 Query: 181 QAEEASRFLVEH-NRKTQQVVLSVMHNNENSEER 213 + A EH NR + V N S+E+ Sbjct: 200 DGDLAEHVAREHVNRSRHAYLQEVARNATKSQEK 233 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,146,507,165 Number of extensions: 41248547 Number of successful extensions: 131941 Number of sequences better than 1.0e-05: 3383 Number of HSP's gapped: 130507 Number of HSP's successfully gapped: 3383 Length of query: 213 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 83 Effective length of database: 1,835,964,253 Effective search space: 152385032999 Effective search space used: 152385032999 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)