BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0023.p (563 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q24Z37.1 Q24Z37_DESHY Putative uncharacterized protein 317 2e-84 B8FRC7.1 B8FRC7_DESHD Zinc finger SWIM domain protein 317 2e-84 C4IIH9.1 C4IIH9_CLOBU Swim zinc finger domain protein 245 8e-63 B1R262.1 B1R262_CLOBU Swim zinc finger domain protein 245 8e-63 B7R772.1 B7R772_9THEO SWIM zinc finger domain protein 227 3e-57 >Q24Z37.1 Q24Z37_DESHY Putative uncharacterized protein Length = 566 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 183/566 (32%), Positives = 298/566 (52%), Gaps = 9/566 (1%) Query: 1 MNLADLSRSISSVIMARGEHYLRSGYVESVRELKPGLYRARFAGTELYEVLVQLGEQDKV 60 MNL + I+ RG Y + G++ S++E + GLY+A G Y + V+L E + + Sbjct: 1 MNLDSFEHEMEKKILERGYQYYQDGHIRSLKETEAGLYQAEVEGNARYRIYVELAEDNTI 60 Query: 61 LSSSCSCPYDMDAICKHQAAVLMYLRDHLQENAS------PAGFESAPAASLQQMLEMKG 114 L+S C CPYD+ CKH+AAV LR+ E P + ++++MLE Sbjct: 61 LASECDCPYDLGEFCKHEAAVYFALRERKSEVQEQQVIPMPKSRQGPQKEAIKKMLEKAS 120 Query: 115 KXXXXXXXXXXXXXXXQTEQIIRIYLSDAQNSDGIGDYRDLIRSYINLYADKHGFVGWGK 174 + + + I + D + + R LI+SYI+ +D+HGF+G+ + Sbjct: 121 QEALADFLLMLAEGSEELKTRIELAFGDENDQQEVKRCRKLIQSYIDKNSDRHGFIGYDQ 180 Query: 175 VDKALQGAELVAAKAVQVFEENNPLQAVRINLCILEEMLELLQASDDSDGTVSGMIEDSL 234 + +AL+G ELV K+ V + +QAVR+ L ++ E +++ Q DDSDG + + D Sbjct: 181 MWEALKGTELVLEKSRDVLGKGKAVQAVRLALLVIGEAVDMTQYGDDSDGGIGVAVGDGF 240 Query: 235 DRIFEVAQLGEQLPPETAETLFHLVLDMTQHPEIDGWPDWQLDLLRCANELAVSEDLQAL 294 + + EV + E L + +F L+++ + GW D Q+DLLR + V+ + Sbjct: 241 EVLDEVREELEDLTETERKEIFALIMEEADNRRYRGWIDCQIDLLRRSAGFIVTPAERER 300 Query: 295 WDEQAELLGQXXXXXXXXXQYFASGVAEIRLEQLNRQDSGEELQDYLYNNLQYSSFREQA 354 + + L +Y + I+ E R + + +L +L YS FRE A Sbjct: 301 MENCLKKLITASQKDSWTSEYLNENILLIQYELHCRFEGEAQATAFLNRHLNYSKFREIA 360 Query: 355 IRLALDAARYDEAIRLAEEGEALDNANHLPGPLKKWKELRYEAYKLSGNALAQRDLGMEL 414 I A+ I+L EGE D G L +W+E RY++Y +G +R L +E Sbjct: 361 IHQAMGEGDEARIIQLCLEGEEKDKG--YSGLLNRWREHRYQSYIRTGQLDNRRSLALEF 418 Query: 415 LCDGDLSYYPAVKSAYPAAEWPPIYNAILDRLE-QRWSWNNVYTKLLIQEKEFDRLLKYV 473 + +G +Y +KS Y EW +Y +++RL ++ +Y ++L++E+E++RL++YV Sbjct: 419 VEEGSFQHYQDLKSTYSTDEWSDVYPKLIERLAGKKKDHRGIYAQILVEEQEWERLMQYV 478 Query: 474 HEHPREIEEYYPHLLADHLQEVVAIFQSYIKQSAAESSTRNHYRQVCGTIRKLRNAAGSA 533 +PR I+ YY +L+A++ +EV IFQ I+Q+AA ++TR+HYR VC TIR L+ A G Sbjct: 479 FANPRSIDSYYKYLMAEYREEVCRIFQHNIEQAAALANTRSHYRGVCATIRTLQKAGGKK 538 Query: 534 TAELVANSLLAEYPNRPAFKDELTKL 559 A V SLL +YP RPAF+DEL KL Sbjct: 539 EARDVVQSLLLKYPRRPAFRDELNKL 564 >B8FRC7.1 B8FRC7_DESHD Zinc finger SWIM domain protein Length = 566 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 183/566 (32%), Positives = 298/566 (52%), Gaps = 9/566 (1%) Query: 1 MNLADLSRSISSVIMARGEHYLRSGYVESVRELKPGLYRARFAGTELYEVLVQLGEQDKV 60 MNL + I+ RG Y + G++ S++E + GLY+A G Y + V+L E + + Sbjct: 1 MNLDSFEHEMEKKILERGYQYYQDGHIRSLKETEAGLYQAEVEGNARYRIYVELAEDNTI 60 Query: 61 LSSSCSCPYDMDAICKHQAAVLMYLRDHLQENAS------PAGFESAPAASLQQMLEMKG 114 L+S C CPYD+ CKH+AAV LR+ E P + ++++MLE Sbjct: 61 LASECDCPYDLGEFCKHEAAVYFALRERKSEVQEQQVIPMPKSRQGPQKEAIKKMLEKAS 120 Query: 115 KXXXXXXXXXXXXXXXQTEQIIRIYLSDAQNSDGIGDYRDLIRSYINLYADKHGFVGWGK 174 + + + I + D + + R LI+SYI+ +D+HGF+G+ + Sbjct: 121 QEALADFLLMLAEGSEELKTRIELAFGDENDQQEVKRCRKLIQSYIDKNSDRHGFIGYDQ 180 Query: 175 VDKALQGAELVAAKAVQVFEENNPLQAVRINLCILEEMLELLQASDDSDGTVSGMIEDSL 234 + +AL+G ELV K+ V + +QAVR+ L ++ E +++ Q DDSDG + + D Sbjct: 181 MWEALKGTELVLEKSRDVLGKGKAVQAVRLALLVIGEAVDMTQYGDDSDGGIGVAVGDGF 240 Query: 235 DRIFEVAQLGEQLPPETAETLFHLVLDMTQHPEIDGWPDWQLDLLRCANELAVSEDLQAL 294 + + EV + E L + +F L+++ + GW D Q+DLLR + V+ + Sbjct: 241 EVLDEVREELEDLTETERKEIFALIMEEADNRRYRGWIDCQIDLLRRSAGFIVTPAERER 300 Query: 295 WDEQAELLGQXXXXXXXXXQYFASGVAEIRLEQLNRQDSGEELQDYLYNNLQYSSFREQA 354 + + L +Y + I+ E R + + +L +L YS FRE A Sbjct: 301 MENCLKKLITASQKDSWTSEYLNENILLIQYELHCRFEGEAQATAFLNRHLNYSKFREIA 360 Query: 355 IRLALDAARYDEAIRLAEEGEALDNANHLPGPLKKWKELRYEAYKLSGNALAQRDLGMEL 414 I A+ I+L EGE D G L +W+E RY++Y +G +R L +E Sbjct: 361 IHQAMGEGDEARIIQLCLEGEEKDKG--YSGLLNRWREHRYQSYIRTGQLDNRRSLALEF 418 Query: 415 LCDGDLSYYPAVKSAYPAAEWPPIYNAILDRLE-QRWSWNNVYTKLLIQEKEFDRLLKYV 473 + +G +Y +KS Y EW +Y +++RL ++ +Y ++L++E+E++RL++YV Sbjct: 419 VEEGSFQHYQDLKSTYSTDEWSDVYPKLIERLAGKKKDHRGIYAQILVEEQEWERLMQYV 478 Query: 474 HEHPREIEEYYPHLLADHLQEVVAIFQSYIKQSAAESSTRNHYRQVCGTIRKLRNAAGSA 533 +PR I+ YY +L+A++ +EV IFQ I+Q+AA ++TR+HYR VC TIR L+ A G Sbjct: 479 FANPRSIDSYYKYLMAEYREEVCRIFQHNIEQAAALANTRSHYRGVCATIRTLQKAGGKK 538 Query: 534 TAELVANSLLAEYPNRPAFKDELTKL 559 A V SLL +YP RPAF+DEL KL Sbjct: 539 EARDVVQSLLLKYPRRPAFRDELNKL 564 >C4IIH9.1 C4IIH9_CLOBU Swim zinc finger domain protein Length = 555 Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 160/563 (28%), Positives = 277/563 (49%), Gaps = 13/563 (2%) Query: 1 MNLADLSRSISSVIMARG-EHYLRSGYVESVRELKPGLYRARFAGTELYEVLVQLGEQDK 59 MN+ + + I+S I+ RG E+Y+ + E E + Y + G E Y+V+++L ++ Sbjct: 1 MNINNFEKKINSTILERGYEYYINNKIAECTYE-EDNTYTLKIDGNEEYQVVIKLDDKGD 59 Query: 60 VLSSSCSCPYDMDAICKHQAAVLMYLRDHL-QENASPAGFESAPAASLQQMLEMKGKXXX 118 ++ S C+CPYD +CKH+ A + D + N + ++ + L+++L K Sbjct: 60 IIYSECNCPYDYGVVCKHEVAAYYKILDIICNVNNNKKAAKTKKKSDLKEVLNSLSKEKL 119 Query: 119 XXXXXXXXXXXXQTEQIIRIYLSDAQNSDGIGDYRDLIRSYINLYADKHGFVGWGKVDKA 178 + I + S N I + LI+S + + + G++ WGK K Sbjct: 120 IGIITDLAKEDTILKNSIILKYSKEDNKTEIKTCKKLIKSIVKKHCAREGYISWGKAYKF 179 Query: 179 LQGAELVAAKAVQVFEENNPLQAVRINLCILEEMLELLQASDDSDGTVSGMIEDSLDRIF 238 + + KA + + AV I + +L+E +E + +DDSDG + ++ +++D I Sbjct: 180 VNDIRTILNKAENT---KDSILAVDIAMLVLDEAMEAFEYADDSDGDIGMLVSEAMDTIE 236 Query: 239 EVAQLGEQLPPETAETLFHLVLDMTQHPEIDGWPDWQLDLLRCANELAVSEDLQALWDEQ 298 + + + E LF + + +Q DGW D +L +L+ + + + + + EQ Sbjct: 237 NIVEYSRDSDMKVKEELFARIFEKSQSDIFDGWSDMRLSMLKICKQFSYVDKFRNMLIEQ 296 Query: 299 AELLGQXXXXXXXXXQYFASGVAEIRLEQLNRQDSGEELQDYLYNNLQYSSFREQAIRLA 358 L + +Y+ + I E ++ + EE + ++ +N++YSSFRE I Sbjct: 297 LNSLIKINGNKENM-KYYNEHILLILYEIIDEFGTEEESKKFIIDNIKYSSFREILIEKY 355 Query: 359 LDAARYDEAIRLAEEGEALDNANHLPGPLKKWKELRYEAYKLSGNALAQRDLGMELLCDG 418 + YD+ I LA EGE N G + KWK++RY AYK Q++LG ELL G Sbjct: 356 NNKKDYDKVIELAIEGEK--NDKMYLGLVNKWKKIRYGAYKNKFMKEEQKELGKELLIQG 413 Query: 419 DLSYYPAVKSAYPAAEWPPIYNAILDRLEQRWSWNN--VYTKLLIQEKEFDRLLKYVHEH 476 D+ YY +K + Y I L+ +W + V K+L E + + LL+YV + Sbjct: 414 DVEYYNDLKEL--EDDEKGFYENIKQILKNSKNWRSREVLLKILYAEDDAEELLEYVRNN 471 Query: 477 PREIEEYYPHLLADHLQEVVAIFQSYIKQSAAESSTRNHYRQVCGTIRKLRNAAGSATAE 536 P IEE+ L +L+EVV+I++ YI A S+ R++Y++VC I++ + A A+ Sbjct: 472 PSSIEEHSEKLKHKYLEEVVSIYKQYIIFEADHSTNRSNYKRVCAIIKRFKKIADKDDAK 531 Query: 537 LVANSLLAEYPNRPAFKDELTKL 559 V N L A Y RPAF DEL+K+ Sbjct: 532 TVINELTARYMRRPAFLDELSKI 554 >B1R262.1 B1R262_CLOBU Swim zinc finger domain protein Length = 555 Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 160/563 (28%), Positives = 277/563 (49%), Gaps = 13/563 (2%) Query: 1 MNLADLSRSISSVIMARG-EHYLRSGYVESVRELKPGLYRARFAGTELYEVLVQLGEQDK 59 MN+ + + I+S I+ RG E+Y+ + E E + Y + G E Y+V+++L ++ Sbjct: 1 MNINNFEKKINSTILERGYEYYINNKIAECTYE-EDNTYTLKIDGNEEYQVVIKLDDKGD 59 Query: 60 VLSSSCSCPYDMDAICKHQAAVLMYLRDHL-QENASPAGFESAPAASLQQMLEMKGKXXX 118 ++ S C+CPYD +CKH+ A + D + N + ++ + L+++L K Sbjct: 60 IIYSECNCPYDYGVVCKHEVAAYYKILDIICNVNNNKKAAKTKKKSDLKEVLNSLSKEKL 119 Query: 119 XXXXXXXXXXXXQTEQIIRIYLSDAQNSDGIGDYRDLIRSYINLYADKHGFVGWGKVDKA 178 + I + S N I + LI+S + + + G++ WGK K Sbjct: 120 IGIITDLAKEDTILKNSIILKYSKEDNKTEIKTCKKLIKSIVKKHCAREGYISWGKAYKF 179 Query: 179 LQGAELVAAKAVQVFEENNPLQAVRINLCILEEMLELLQASDDSDGTVSGMIEDSLDRIF 238 + + KA + + AV I + +L+E +E + +DDSDG + ++ +++D I Sbjct: 180 VNDIRTILNKAENT---KDSILAVDIAMLVLDEAMEAFEYADDSDGDIGMLVSEAMDTIE 236 Query: 239 EVAQLGEQLPPETAETLFHLVLDMTQHPEIDGWPDWQLDLLRCANELAVSEDLQALWDEQ 298 + + + E LF + + +Q DGW D +L +L+ + + + + + EQ Sbjct: 237 NIVEYSRDSDMKVKEELFARIFEKSQSDIFDGWSDMRLSMLKICKQFSYVDKFRNMLIEQ 296 Query: 299 AELLGQXXXXXXXXXQYFASGVAEIRLEQLNRQDSGEELQDYLYNNLQYSSFREQAIRLA 358 L + +Y+ + I E ++ + EE + ++ +N++YSSFRE I Sbjct: 297 LNSLIKINGNKENM-KYYNEHILLILYEIIDEFGTEEESKKFIIDNIKYSSFREILIEKY 355 Query: 359 LDAARYDEAIRLAEEGEALDNANHLPGPLKKWKELRYEAYKLSGNALAQRDLGMELLCDG 418 + YD+ I LA EGE N G + KWK++RY AYK Q++LG ELL G Sbjct: 356 NNKKDYDKVIELAIEGEK--NDKMYLGLVNKWKKIRYGAYKNKFMKEEQKELGKELLIQG 413 Query: 419 DLSYYPAVKSAYPAAEWPPIYNAILDRLEQRWSWNN--VYTKLLIQEKEFDRLLKYVHEH 476 D+ YY +K + Y I L+ +W + V K+L E + + LL+YV + Sbjct: 414 DVEYYNDLKEL--EDDEKGFYENIKQILKNSKNWRSREVLLKILYAEDDAEELLEYVRNN 471 Query: 477 PREIEEYYPHLLADHLQEVVAIFQSYIKQSAAESSTRNHYRQVCGTIRKLRNAAGSATAE 536 P IEE+ L +L+EVV+I++ YI A S+ R++Y++VC I++ + A A+ Sbjct: 472 PSSIEEHSEKLKHKYLEEVVSIYKQYIIFEADHSTNRSNYKRVCAIIKRFKKIADKDDAK 531 Query: 537 LVANSLLAEYPNRPAFKDELTKL 559 V N L A Y RPAF DEL+K+ Sbjct: 532 TVINELTARYMRRPAFLDELSKI 554 >B7R772.1 B7R772_9THEO SWIM zinc finger domain protein Length = 558 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 150/563 (26%), Positives = 264/563 (46%), Gaps = 10/563 (1%) Query: 1 MNLADLSRSISSVIMARGEHYLRSGYVESVRELKPGLYRARFAGTELYEVLVQLGEQDKV 60 M + D I +I+ RG Y G + + Y + G++ YEV+V+L + ++ Sbjct: 1 MTIYDFEDYIDEIILDRGYDYYVGGNIIDLYNSGKNEYIFKIQGSDDYEVMVKLDDNGEI 60 Query: 61 LSSSCSCPYDMDAICKHQAAVLMYLRDHL--QENASPAGFESAPAASLQQMLEMKGKXXX 118 L S C+CPYD ICKHQ A L + Q AS + ++++L+ K Sbjct: 61 LYSECNCPYDYGPICKHQVAAFYKLVEIFSSQNEASNVQKRAKEQQDIKEVLDNLSKEEL 120 Query: 119 XXXXXXXXXXXXQTEQIIRIYLSDAQNSDGIGDYRDLIRSYINLYADKHGFVGWGKVDKA 178 + I + S + + R LI S + Y + GF+ + + Sbjct: 121 IDIIMDLIGDDETLKNRIVLRYSKVDSKQELIRCRKLINSIVRKYKGRDGFISYNETYDF 180 Query: 179 LQGAELVAAKAVQVFEENNPLQAVRINLCILEEMLELLQASDDSDGTVSGMIEDSLDRIF 238 + E + KA + A+ I +LEE ++ + +DDS G++ ++ D+++ I Sbjct: 181 VSEMEDLLWKARDT---EDIFLALDIAFLVLEEAIQAFEYADDSGGSIDLLVSDAIEVIG 237 Query: 239 EVAQLGEQLPPETAETLFHLVLDMTQHPEIDGWPDWQLDLLRCANELAVSEDLQALWDEQ 298 ++ E L + +F +L +++ DGW +++D+L + E+L+ + Sbjct: 238 DIVFRSENLDINLKKEIFSRLLTLSESKIFDGWESYRIDILWLCADFVDIEELRDKLVSK 297 Query: 299 AELLGQXXXXXXXXXQYFASGVAEIRLEQLNRQDSGEELQDYLYNNLQYSSFREQAIRLA 358 E L +Y + +I R S EE + ++ +L++ F+E I+ Sbjct: 298 IEYLVSNWSTENRYGKYITEKLLQILYVIKERYGSREEAEQFVQEHLEFDFFKEVFIQKC 357 Query: 359 LDAARYDEAIRLAEEGEALDNANHLPGPLKKWKELRYEAYKLSGNALAQRDLGMELLCDG 418 Y++ I LA + E D PG + KWK++RYEAYK Q L ELL DG Sbjct: 358 FREKEYEKVIELALKWEEQDR--QYPGLVSKWKKMRYEAYKKLSLKEEQMKLAKELLFDG 415 Query: 419 DLSYYPAVKSAYPAAEWPPIYNAILDRLEQRWSWN--NVYTKLLIQEKEFDRLLKYVHEH 476 + YY +K + YN + L+ W+ ++Y K++++E + D L+++V E+ Sbjct: 416 NFEYYRELKEL-ITGDRAEFYNNLKQELKNYKGWHGKDIYLKVILEENDLDELMEFVKEN 474 Query: 477 PREIEEYYPHLLADHLQEVVAIFQSYIKQSAAESSTRNHYRQVCGTIRKLRNAAGSATAE 536 P IEEY L EV+ +++ YIK +A+ SS R Y++VCG +++ + AG + + Sbjct: 475 PTRIEEYADKLKDKFKDEVIEVYKKYIKLAASSSSNRKDYQKVCGILKRYKKVAGEQSQK 534 Query: 537 LVANSLLAEYPNRPAFKDELTKL 559 + N L+ Y RPAF DEL+K+ Sbjct: 535 EIINELMRLYKKRPAFIDELSKI 557 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,058,716,538 Number of extensions: 118595178 Number of successful extensions: 318461 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 318435 Number of HSP's successfully gapped: 32 Length of query: 563 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 422 Effective length of database: 1,732,333,088 Effective search space: 731044563136 Effective search space used: 731044563136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)