BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0021.p (236 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3Y9.1 B3K3Y9_9BACI Uridine kinase EC=2.7.1.48 369 e-100 B1D821.1 B1D821_9BACL Uridine kinase EC=2.7.1.48 333 8e-90 A9U805.1 A9U805_PHYPA Uridine kinase EC=2.7.1.48 (Fragment) 298 3e-79 B1YJD8.1 B1YJD8_EXIS2 Uridine kinase EC=2.7.1.48 241 4e-62 C0ZAS6.1 URK_BREBN Uridine kinase EC=2.7.1.48 236 9e-61 >B3K3Y9.1 B3K3Y9_9BACI Uridine kinase EC=2.7.1.48 Length = 230 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/218 (82%), Positives = 197/218 (90%) Query: 19 REVYYNTMLIIGIAGGTGSGKTTVARSVIDRLGTDKVTFISQDNYYKDHSYLSFEERGAI 78 RE Y MLIIGIAGGTGSGKTTVARSVIDRLG+DKVTFISQDNYYKDH LSFEER AI Sbjct: 12 REGYGFAMLIIGIAGGTGSGKTTVARSVIDRLGSDKVTFISQDNYYKDHKELSFEEREAI 71 Query: 79 NYDHPLAFDNGLLIEHLDCLKAGQAAYAPVYDFTIHARSTDKTVELLPNNIVIVEGLHVL 138 NYDHP AFDN LL+EHL LK+GQ A+APVYDFT HAR TD+T+EL PNNIVI+EGLHVL Sbjct: 72 NYDHPFAFDNELLVEHLGILKSGQPAFAPVYDFTAHARFTDQTIELKPNNIVIIEGLHVL 131 Query: 139 SDEQLREQLNIKVFVDTDPDVRILRRVLRDIEERGRTIRSIHTQYLTTVKPMHEAFIEPS 198 SDE LR+ L+IKVFVDTDPDVR+LRRV+RDIE+RGRTI+SIH QYLTTVKPMHEAFIEPS Sbjct: 132 SDENLRKLLHIKVFVDTDPDVRLLRRVVRDIEDRGRTIQSIHNQYLTTVKPMHEAFIEPS 191 Query: 199 KKYADLIIPEGGQNEVGIQLLSVLTEKYLSGDHQWTGK 236 KKYADLIIPEGG+NEVGI+LLSVLTEKYL+GD +G+ Sbjct: 192 KKYADLIIPEGGENEVGIRLLSVLTEKYLTGDRTLSGE 229 >B1D821.1 B1D821_9BACL Uridine kinase EC=2.7.1.48 Length = 202 Score = 333 bits (854), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 160/202 (79%), Positives = 176/202 (87%) Query: 26 MLIIGIAGGTGSGKTTVARSVIDRLGTDKVTFISQDNYYKDHSYLSFEERGAINYDHPLA 85 MLIIGIAGGTGSGKT+VARSVI+RLG DKVTFISQDNYYKDH +LSF +R +NYDHPL Sbjct: 1 MLIIGIAGGTGSGKTSVARSVIERLGEDKVTFISQDNYYKDHPHLSFAQREGLNYDHPLV 60 Query: 86 FDNGLLIEHLDCLKAGQAAYAPVYDFTIHARSTDKTVELLPNNIVIVEGLHVLSDEQLRE 145 FDN LLIEHL LK+GQ A APVYDF H+R DKTV L P I+++EGLHVLSDE LR Sbjct: 61 FDNELLIEHLKQLKSGQTAEAPVYDFANHSRFKDKTVALKPCKIIVIEGLHVLSDENLRA 120 Query: 146 QLNIKVFVDTDPDVRILRRVLRDIEERGRTIRSIHTQYLTTVKPMHEAFIEPSKKYADLI 205 L+IKVFVDTDPDVRILRRVLRDIEERGR+I+SIH QYL TVKPMHEAFIEPSKKYAD+I Sbjct: 121 MLDIKVFVDTDPDVRILRRVLRDIEERGRSIQSIHDQYLKTVKPMHEAFIEPSKKYADII 180 Query: 206 IPEGGQNEVGIQLLSVLTEKYL 227 IPEGGQNEVGIQ+LS+L EKY Sbjct: 181 IPEGGQNEVGIQMLSILMEKYF 202 >A9U805.1 A9U805_PHYPA Uridine kinase EC=2.7.1.48 (Fragment) Length = 177 Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 141/175 (80%), Positives = 155/175 (88%) Query: 60 QDNYYKDHSYLSFEERGAINYDHPLAFDNGLLIEHLDCLKAGQAAYAPVYDFTIHARSTD 119 QDNYYKD+ +LS ER INYDHP AFDN LLIEHL LK GQ AYAPVYDFT+HARS+ Sbjct: 1 QDNYYKDNPHLSLAERELINYDHPFAFDNELLIEHLSQLKEGQTAYAPVYDFTVHARSSV 60 Query: 120 KTVELLPNNIVIVEGLHVLSDEQLREQLNIKVFVDTDPDVRILRRVLRDIEERGRTIRSI 179 VEL PNNIVI+EGLHVLSDE+LRE L+IKVFVDTDPDVRILRRVLRDIEERGR+I+SI Sbjct: 61 DKVELTPNNIVIIEGLHVLSDEKLREMLDIKVFVDTDPDVRILRRVLRDIEERGRSIQSI 120 Query: 180 HTQYLTTVKPMHEAFIEPSKKYADLIIPEGGQNEVGIQLLSVLTEKYLSGDHQWT 234 H QYL TVKPMHEAFIEPSKKYADLIIPEGG+NEVGIQLLS+LTEK+L+GD W+ Sbjct: 121 HQQYLATVKPMHEAFIEPSKKYADLIIPEGGENEVGIQLLSILTEKFLTGDRNWS 175 >B1YJD8.1 B1YJD8_EXIS2 Uridine kinase EC=2.7.1.48 Length = 215 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 113/193 (58%), Positives = 144/193 (74%), Gaps = 1/193 (0%) Query: 27 LIIGIAGGTGSGKTTVARSVIDRLGTDKVTFISQDNYYKDHSYLSFEERGAINYDHPLAF 86 ++IG+AGGTGSGKTTVARS++D ++ + I QD YYKD S LS EER NYDHP AF Sbjct: 5 VVIGVAGGTGSGKTTVARSLVDAFPSESIVMIEQDAYYKDQSELSMEERYQTNYDHPFAF 64 Query: 87 DNGLLIEHLDCLKAGQAAYAPVYDFTIHARSTDKTVELLPNNIVIVEGLHVLSDEQLREQ 146 DN LLIEH+ L+ QA PVYD+ H R+T+ T+ L P +++IVEG+ L DE+LRE Sbjct: 65 DNDLLIEHIKALRENQAVEKPVYDYVAHTRATE-TIPLDPRDVIIVEGILALEDERLREL 123 Query: 147 LNIKVFVDTDPDVRILRRVLRDIEERGRTIRSIHTQYLTTVKPMHEAFIEPSKKYADLII 206 ++IKVFVDTD DVRILRR+ RD+ ERGR+I S+ QY V+PMH F EP+K+YAD+I+ Sbjct: 124 MDIKVFVDTDADVRILRRMQRDMNERGRSIDSVVEQYTKVVRPMHLQFCEPTKRYADIIV 183 Query: 207 PEGGQNEVGIQLL 219 PEGG+N V I LL Sbjct: 184 PEGGENHVAIDLL 196 >C0ZAS6.1 URK_BREBN Uridine kinase EC=2.7.1.48 Length = 214 Score = 236 bits (603), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 111/210 (52%), Positives = 152/210 (72%), Gaps = 1/210 (0%) Query: 27 LIIGIAGGTGSGKTTVARSVIDRLGTDKVTFISQDNYYKDHSYLSFEERGAINYDHPLAF 86 ++IG+AGG+GSGKTTVA+ + + D VT I QD+YYKD S+LS EER NYDHP AF Sbjct: 5 VLIGVAGGSGSGKTTVAKELYRQFQNDSVTMIEQDSYYKDQSHLSPEERALTNYDHPFAF 64 Query: 87 DNGLLIEHLDCLKAGQAAYAPVYDFTIHARSTDKTVELLPNNIVIVEGLHVLSDEQLREQ 146 DN LL+ HL L G+A P+YDF +H R ++ +++ P +++I+EG+ +L DE++R Sbjct: 65 DNDLLLAHLQELMQGKAIQKPIYDFKVHNRKPEQ-IQVDPKDVIILEGMLILEDERIRNL 123 Query: 147 LNIKVFVDTDPDVRILRRVLRDIEERGRTIRSIHTQYLTTVKPMHEAFIEPSKKYADLII 206 ++IKV+VDTD DVRI RR++RDIEERGR++ S+ TQYL V+PMH FIEP+K+YAD+II Sbjct: 124 MDIKVYVDTDADVRIARRIVRDIEERGRSLDSVVTQYLNVVRPMHLQFIEPTKRYADVII 183 Query: 207 PEGGQNEVGIQLLSVLTEKYLSGDHQWTGK 236 PEGG N V + LLS L Q+T + Sbjct: 184 PEGGYNRVALDLLSTKIGNILLEKQQFTNQ 213 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,429,591,812 Number of extensions: 59356093 Number of successful extensions: 294088 Number of sequences better than 1.0e-05: 1405 Number of HSP's gapped: 292213 Number of HSP's successfully gapped: 1410 Length of query: 236 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 104 Effective length of database: 1,817,122,223 Effective search space: 188980711192 Effective search space used: 188980711192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)