BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0020.p (370 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6CTG9.1 A6CTG9_9BACI Putative uncharacterized protein 411 e-113 B3KCY1.1 B3KCY1_9BACI Aromatic amino acid beta-eliminating lyase... 409 e-112 Q2BE31.1 Q2BE31_9BACI Putative uncharacterized protein 406 e-111 B1DEY1.1 B1DEY1_9BACL Aromatic amino acid beta-eliminating lyase... 400 e-109 C0ZIT3.1 C0ZIT3_BREBN Putative uncharacterized protein 394 e-107 >A6CTG9.1 A6CTG9_9BACI Putative uncharacterized protein Length = 363 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/360 (55%), Positives = 249/360 (69%) Query: 10 EGKSLSEAFNAAPVQLGGHGKREVRVLKEAFAGAGDHVASDMYGAGEVIEEFQAEMAEVL 69 E KSL EAF ++ GHG R VLKEAF SDMYG G+VIE+FQ +MAE+L Sbjct: 3 ENKSLFEAFKQTRIKTNGHGDRNAGVLKEAFEHVASDTESDMYGNGKVIEDFQVKMAELL 62 Query: 70 GKEAAVFFPSGTMAQQIALRIWSDRKGSRRVAYHPLCHLEIHEQDGXXXXXXXXXXXXXX 129 GKE++VFFPSGTMAQQIALRIW D K ++VAYHPL HLEIHE+DG Sbjct: 63 GKESSVFFPSGTMAQQIALRIWCDEKEIKKVAYHPLSHLEIHEEDGLKELHGIQSVLLAD 122 Query: 130 XDRLITLEDVQNMGAGIACLLLELPQREIGGQLPEYAELEAISAYCRGQGIMLHLDGARL 189 D +ITLED+Q+M +A +LLELPQREIGGQLP++ L++IS YCR +GI LHLDGARL Sbjct: 123 KDSVITLEDIQHMKEEVAAVLLELPQREIGGQLPDFETLQSISDYCRKKGIKLHLDGARL 182 Query: 190 FEVLPYYGKTAAEVCSLFDSVYISFYKXXXXXXXXXXXXSADFTGESKIWKRRHGGDLIX 249 EVLPYY KTA+EVC+LFDSVYIS YK S +FT +SK+WKRRHGGDLI Sbjct: 183 LEVLPYYRKTASEVCNLFDSVYISLYKGIGGIAGAILAGSEEFTKKSKVWKRRHGGDLIS 242 Query: 250 XXXXXXXXXXXXXQRVDKMGQYYTDAKELAERFNACHKVVTLPEVPVSNMFHVHFALSRE 309 +R DK+ +YY +A+E A +N+C KV TLPEVPVSNMFHVH+ +++ Sbjct: 243 LYPYIISADYYLDERADKLERYYLNAREFASFYNSCEKVSTLPEVPVSNMFHVHYEMAKA 302 Query: 310 QVEPVLITVSEETGVGFTPRLKETGEFSCAYELNIGDLYSGIPKVQLEAAFGLLDRLLKE 369 +EP+L+ + E+TGVG + L+ETGE SC YE++IGD+Y I K +L F LL+ LK+ Sbjct: 303 DLEPILVDIYEKTGVGLSGYLRETGETSCYYEVSIGDVYDTIQKEKLTEVFQLLNESLKK 362 >B3KCY1.1 B3KCY1_9BACI Aromatic amino acid beta-eliminating lyase/threonine aldolase Length = 367 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 206/362 (56%), Positives = 240/362 (66%) Query: 9 DEGKSLSEAFNAAPVQLGGHGKREVRVLKEAFAGAGDHVASDMYGAGEVIEEFQAEMAEV 68 ++ KSL E++ L GH +R V VL EAF A D YG G +IEEFQ MAEV Sbjct: 3 EQRKSLGESYGETAYPLIGHSRRNVEVLLEAFRSADGSQMGDTYGKGAIIEEFQTRMAEV 62 Query: 69 LGKEAAVFFPSGTMAQQIALRIWSDRKGSRRVAYHPLCHLEIHEQDGXXXXXXXXXXXXX 128 LGKE+AVFFPSGTMAQQIALRIW D +RVAYHPLCHLEIHE+DG Sbjct: 63 LGKESAVFFPSGTMAQQIALRIWCDDADLKRVAYHPLCHLEIHEEDGLKELHHIEPILLG 122 Query: 129 XXDRLITLEDVQNMGAGIACLLLELPQREIGGQLPEYAELEAISAYCRGQGIMLHLDGAR 188 +RLITLEDVQ + IACLLLELPQREIGGQLP+YAELEAISAYCR QGI LHLDGAR Sbjct: 123 DQERLITLEDVQRLDRDIACLLLELPQREIGGQLPDYAELEAISAYCRTQGIKLHLDGAR 182 Query: 189 LFEVLPYYGKTAAEVCSLFDSVYISFYKXXXXXXXXXXXXSADFTGESKIWKRRHGGDLI 248 LFE+ PYY KTAAE+C+LFDSVY+SFYK DFT +SK+WKRRHGGDL+ Sbjct: 183 LFEITPYYQKTAAEICALFDSVYVSFYKGIGGIAGAVLAGGTDFTAKSKVWKRRHGGDLV 242 Query: 249 XXXXXXXXXXXXXXQRVDKMGQYYTDAKELAERFNACHKVVTLPEVPVSNMFHVHFALSR 308 +R+ MG+YY +AKELA F C V T P VPVSNMFHV+F + + Sbjct: 243 SLYPYIISSDYYYAERIGSMGRYYEEAKELAAMFGQCRGVKTKPAVPVSNMFHVYFEMDK 302 Query: 309 EQVEPVLITVSEETGVGFTPRLKETGEFSCAYELNIGDLYSGIPKVQLEAAFGLLDRLLK 368 EQ+EP+LI V TGVG L E GE C E+NIG+ Y PK + AF +L+ L+ Sbjct: 303 EQLEPILIDVYRATGVGLVAYLNEAGEDQCYSEVNIGERYGKTPKESIHEAFRMLNEKLQ 362 Query: 369 EA 370 EA Sbjct: 363 EA 364 >Q2BE31.1 Q2BE31_9BACI Putative uncharacterized protein Length = 364 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 202/359 (56%), Positives = 242/359 (67%) Query: 12 KSLSEAFNAAPVQLGGHGKREVRVLKEAFAGAGDHVASDMYGAGEVIEEFQAEMAEVLGK 71 KSL E+++ L GHGKR V VLK+AF + S+MYG G+VIE+FQ +MA +LGK Sbjct: 4 KSLQESYSLVKYPLAGHGKRNVEVLKKAFEQISGSIESEMYGKGKVIEDFQDKMANLLGK 63 Query: 72 EAAVFFPSGTMAQQIALRIWSDRKGSRRVAYHPLCHLEIHEQDGXXXXXXXXXXXXXXXD 131 EAAVFFPSGTMAQQIALRIW D KG +VAYHPL HLEIHE+DG Sbjct: 64 EAAVFFPSGTMAQQIALRIWCDEKGVAKVAYHPLSHLEIHEEDGLKELHHIETVLLADQT 123 Query: 132 RLITLEDVQNMGAGIACLLLELPQREIGGQLPEYAELEAISAYCRGQGIMLHLDGARLFE 191 R+I L+DV M +ACLLLELPQREIGGQLP+Y LE ISAYCR +GI L LDGARL E Sbjct: 124 RVIELDDVTGMEEDVACLLLELPQREIGGQLPDYGTLEKISAYCREKGIKLQLDGARLLE 183 Query: 192 VLPYYGKTAAEVCSLFDSVYISFYKXXXXXXXXXXXXSADFTGESKIWKRRHGGDLIXXX 251 VLPYY KTAAEVC+LFDSVY+S YK S +FT +SK+WKRRHGGDLI Sbjct: 184 VLPYYKKTAAEVCALFDSVYVSLYKGIGGIAGAVLAGSKEFTEKSKVWKRRHGGDLISLY 243 Query: 252 XXXXXXXXXXXQRVDKMGQYYTDAKELAERFNACHKVVTLPEVPVSNMFHVHFALSREQV 311 QR KM YY +AKELA+ +N+C V TLP +PVSNMFHVHF + + Sbjct: 244 PYILSADYYYDQRSGKMDAYYEEAKELAQLYNSCEGVYTLPTIPVSNMFHVHFEHPKGET 303 Query: 312 EPVLITVSEETGVGFTPRLKETGEFSCAYELNIGDLYSGIPKVQLEAAFGLLDRLLKEA 370 EP+LI + EETG+GFT L+E S YE++IGDLY G+PK L +F LL+ + +A Sbjct: 304 EPILIQIQEETGIGFTGNLREKDSHSSYYEVSIGDLYEGVPKDLLNQSFQLLNEKMAKA 362 >B1DEY1.1 B1DEY1_9BACL Aromatic amino acid beta-eliminating lyase/threonine aldolase Length = 364 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/360 (56%), Positives = 247/360 (68%), Gaps = 1/360 (0%) Query: 12 KSLSEAFNAAPVQLGGHGKREVRVLKEAFAGAGDHVASDMYGAGEVIEEFQAEMAEVLGK 71 K+L EAFN A + GHGKR V+VLK+ F V SD+YG G+VIE+FQA++A LGK Sbjct: 3 KTLLEAFNTAEYPVVGHGKRNVQVLKDTFDHLDGEVDSDIYGTGKVIEDFQAKIAAYLGK 62 Query: 72 EAAVFFPSGTMAQQIALRIWSDRKGSRRVAYHPLCHLEIHEQDGXXXXXXXXXXXXXXXD 131 +AVFFPSGTMAQQIALR+W + KGSR+VAYHPLCHLEIHEQDG D Sbjct: 63 PSAVFFPSGTMAQQIALRLWCEEKGSRKVAYHPLCHLEIHEQDGLKELHHIEPILLADKD 122 Query: 132 RLITLEDVQNMGAGIACLLLELPQREIGGQLPEYAELEAISAYCRGQGIMLHLDGARLFE 191 RLITL+DV+NM IACLLLELPQREIGGQLP + ELEAI+AYCR + I LHLDGARL+E Sbjct: 123 RLITLDDVKNMDEDIACLLLELPQREIGGQLPAFEELEAIAAYCRAKDIRLHLDGARLYE 182 Query: 192 VLPYYGKTAAEVCSLFDSVYISFYKXXXXXXXXXXXXSADFTGESKIWKRRHGGDLIXXX 251 +LPYYGKTAAEVCSLF SVY+SFYK +FT +SKIWKRRHGGDLI Sbjct: 183 ILPYYGKTAAEVCSLFHSVYVSFYKGIGGIAGAVLAGEEEFTKQSKIWKRRHGGDLISLY 242 Query: 252 XXXXXXXXXXXQRVDKMGQYYTDAKELAERFN-ACHKVVTLPEVPVSNMFHVHFALSREQ 310 +R+ KM QYY A ELA +N + T P VPVSNMFHVH A+ +E Sbjct: 243 PYILNADQAFDERLPKMEQYYRSAVELAGLYNCGIEGITTRPLVPVSNMFHVHAAMPKEI 302 Query: 311 VEPVLITVSEETGVGFTPRLKETGEFSCAYELNIGDLYSGIPKVQLEAAFGLLDRLLKEA 370 E +LI V EE+G+G T +++ GE + YE+++GD Y IPK +L+ AF LL +K+ Sbjct: 303 FEKILIAVYEESGIGLTGNVRDAGEGASYYEVSLGDRYPAIPKDRLKQAFELLHEKVKQT 362 >C0ZIT3.1 C0ZIT3_BREBN Putative uncharacterized protein Length = 368 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/361 (53%), Positives = 240/361 (66%) Query: 9 DEGKSLSEAFNAAPVQLGGHGKREVRVLKEAFAGAGDHVASDMYGAGEVIEEFQAEMAEV 68 ++ K+L E F Q+ GH KR++ L++ + +V DMYG GE+IE FQ +MAE Sbjct: 2 NDTKTLREVFKKTTYQIAGHSKRDLHQLQQVLSRVDGNVEGDMYGTGELIENFQRKMAEY 61 Query: 69 LGKEAAVFFPSGTMAQQIALRIWSDRKGSRRVAYHPLCHLEIHEQDGXXXXXXXXXXXXX 128 LGKE+AVFFPSGTMAQQIALRIW D KG ++VAYHPLCHLEIHE+DG Sbjct: 62 LGKESAVFFPSGTMAQQIALRIWCDEKGIKKVAYHPLCHLEIHEEDGLKELHQIEAVLLA 121 Query: 129 XXDRLITLEDVQNMGAGIACLLLELPQREIGGQLPEYAELEAISAYCRGQGIMLHLDGAR 188 + +I L+DV M IACLLLELPQREIGGQLP Y LEAIS YCR +GI LHLDGAR Sbjct: 122 DKNSVIELDDVLGMDDDIACLLLELPQREIGGQLPAYENLEAISRYCREKGIRLHLDGAR 181 Query: 189 LFEVLPYYGKTAAEVCSLFDSVYISFYKXXXXXXXXXXXXSADFTGESKIWKRRHGGDLI 248 L E+LPYY KTA EVC+LFDSVY+SFYK DFT +SK+WKRRHGGDLI Sbjct: 182 LLEILPYYQKTAEEVCALFDSVYVSFYKGIGGIAGAILAGDEDFTKQSKVWKRRHGGDLI 241 Query: 249 XXXXXXXXXXXXXXQRVDKMGQYYTDAKELAERFNACHKVVTLPEVPVSNMFHVHFALSR 308 QR K QYY AKELA +N C + T P VPVSNMFHVH L + Sbjct: 242 SLYPYIVTAEYHFEQRKHKFSQYYEHAKELAALYNQCQGISTRPTVPVSNMFHVHADLPK 301 Query: 309 EQVEPVLITVSEETGVGFTPRLKETGEFSCAYELNIGDLYSGIPKVQLEAAFGLLDRLLK 368 E++E +++++SEETG+GFT +++ E S +YE++IGD Y+ IPK +L AF L + + Sbjct: 302 EELERIMVSLSEETGIGFTHYVRQDDESSSSYEVSIGDRYAMIPKEELALAFEKLHQKIG 361 Query: 369 E 369 E Sbjct: 362 E 362 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,969,441,589 Number of extensions: 74559941 Number of successful extensions: 174410 Number of sequences better than 1.0e-05: 209 Number of HSP's gapped: 174263 Number of HSP's successfully gapped: 209 Length of query: 370 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 233 Effective length of database: 1,770,017,148 Effective search space: 412413995484 Effective search space used: 412413995484 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)