BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0019.p (438 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8RE12.1 A8RE12_9FIRM Putative uncharacterized protein 174 2e-41 Q3ZK41.1 Q3ZK41_9LACT EpsK 130 3e-28 A5G610.1 A5G610_GEOUR Glycosyl transferase, family 2 117 3e-24 Q72EM5.1 Q72EM5_DESVH Putative uncharacterized protein 108 2e-21 C1QA93.1 C1QA93_9SPIR Predicted glycosyltransferase 99 1e-18 >A8RE12.1 A8RE12_9FIRM Putative uncharacterized protein Length = 311 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/265 (37%), Positives = 157/265 (59%), Gaps = 12/265 (4%) Query: 122 KVSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSDGTAELMSRSFGDDPRVIFM 181 K+SV+IT+YNR E+L QA+ S++ QDY +KEI V+DDCS D L F +I++ Sbjct: 4 KISVVITSYNRYEYLTQAIHSVVMQDYSNKEIIVVDDCSDD----LNYDEFKMRDDIIYI 59 Query: 182 QNETNQGPGHNRRKALEAHGDGEYTLFLDDDDYLIDRSYFSKAVYFHQQHPEIAFVAANV 241 +NE N G +R+ GEY +F+DDDDY + + KA+ + +I+FV+ NV Sbjct: 60 RNEANSGASMSRKNGYRV-ATGEYIIFMDDDDYYTNSDFLKKAMNGFLNNTDISFVSGNV 118 Query: 242 FLEYSKTEQLKPSS-LRLSRIIPKEAYFKNFEQKGYPKPASTLTAIFKRDTLMKMDILNM 300 + ++EQ+ P++ L + +E Y K F+ K Y KP ST + +F + K I+ M Sbjct: 119 NVYDQQSEQVLPANKLPFYGNVDREEYLKGFQTK-YIKPYSTFSTVFSMKVIDK--IIEM 175 Query: 301 NMVNDASIYLRALLIGDAGFIDTFAGVYRIHGNNITFNLSQSFLIENLEEKRLIRNMAIE 360 M ND+SIYL ALL G FI+ G YR+H +N+T L+ F+++NL++K+ I++ + Sbjct: 176 PMFNDSSIYLGALLYGKPYFIEDIIGNYRVHKSNMTKALNVEFILQNLKQKKDIKDAMLS 235 Query: 361 RYGYSKTEMNEWFNHNVYDTISYYL 385 + + ++ +WF V T+ YYL Sbjct: 236 QVSF---DLEKWFYQQVKLTVDYYL 257 >Q3ZK41.1 Q3ZK41_9LACT EpsK Length = 316 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/316 (29%), Positives = 153/316 (48%), Gaps = 15/316 (4%) Query: 118 STLPKVSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSDGTAELMSR-SFGDDP 176 S LP VS+IITT+NR +L Q ++SIL Q Y + EI ++DD S D T ++ Sbjct: 5 SNLPLVSIIITTFNRINYLKQMLESILIQSYKNVEIIIVDDGSVDNTKNIIREYQLKYKQ 64 Query: 177 RVIFMQNETNQGPGHNRRKALEAHGDGEYTLFLDDDDYLIDRSYFSKAVYFHQQHPEIAF 236 ++IF E +GPG NR A + GE+ +F DDDDY D ++ K+V +++ Sbjct: 65 QIIFF--EGKKGPGINRFLAYQKIS-GEFIVFCDDDDYYTDINFIEKSVNIMYNFQDVSL 121 Query: 237 VAANVFLEYSKTEQLKPSSLRLSRIIPKEAYFKNFEQKGYPKPASTLTAIFKRDTLMKMD 296 + + + Y K L+ L I NF + + KP ST + ++R T K Sbjct: 122 ICFSSDILYVKDNLLETKQLNKKGIFESGEVANNFLTE-FQKPNSTFPSFYRRSTFEKNG 180 Query: 297 ILNMNMVNDASIYLRALLIGDAGFIDTFAGVYRIHGNNITFNLSQSFLIENLEEKRLIRN 356 + ND +IYLR +L G + GVYR+H +I +L +F+I+ L EK+++ Sbjct: 181 FTEVKSFNDTNIYLRGILGGKVYYSQKNVGVYRVHSGSIGNSLDPNFIIQVLNEKKILSK 240 Query: 357 MAIERYGYSKTEMNEWFNHNVYDTISYYLMNSAKSHTDFKSMYSWAS-DHCPKAYSQLKR 415 + S + +W +T YY S+K ++ ++ W + Y + K+ Sbjct: 241 YLMT----SPKKQEQWLYLQTLNTTDYYADRSSK--VEYFTILKWFKLNLSNNYYHRAKK 294 Query: 416 QF---RTKLMKKQLLR 428 F R K + K+ ++ Sbjct: 295 MFIFARIKFLMKKFIK 310 >A5G610.1 A5G610_GEOUR Glycosyl transferase, family 2 Length = 318 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 11/232 (4%) Query: 120 LPKVSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSDGTAELMSRSFGDDPRVI 179 LPKVS++I TY +++ + A+ S L Q YP+ E+ V+DD S D TAE ++ DPR+ Sbjct: 4 LPKVSIVIPTYGQQDCVSHAISSALAQSYPNLEVIVVDDASPDQTAEKVAAY--RDPRLR 61 Query: 180 FMQNETNQGPGHNRRKALEAHGDGEYTLFLDDDDYLIDRSYFSKAVYFHQQHPEIAFVAA 239 +++N N G N R+AL GE+ + LD DD+ ID + SKAV P I V+A Sbjct: 62 YIRNTQNLGRVKNYRRALYELATGEWVVNLDGDDFYIDVDFISKAVELAYSEPGIVIVSA 121 Query: 240 --NVFLEYSKTEQLKPSSLRLSRIIPKEAYFKNFEQKGYPKPASTLTAIFKRDTLMKMDI 297 NV + T +P L + + KEA + +Q+ + S L ++ R + + D Sbjct: 122 RRNVV---TATGTREPLLLDTTILSGKEALLRYHDQRYH---FSHLATLYHRPSALACDF 175 Query: 298 LNMNMV-NDASIYLRALLIGDAGFIDTFAGVYRIHGNNITFNLSQSFLIENL 348 M+++ +D LR L G ++D G + +HG N + ++ NL Sbjct: 176 YRMDVISSDWESLLRLALTGKVAYLDRVVGCWNLHGGNASLINCWRDMVNNL 227 >Q72EM5.1 Q72EM5_DESVH Putative uncharacterized protein Length = 321 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 8/231 (3%) Query: 123 VSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSD-GTAELMSRSFGDDPRVIFM 181 V+V+I TYN+K+++ A++S L Q Y EI V DD S D G A+++ R + + P+V Sbjct: 3 VTVMIPTYNQKDYVGSAIESALAQTYADLEIVVADDASPDPGVAKVLER-YRNHPKVRLY 61 Query: 182 QNETNQGPGHNRRKALEAHGDGEYTLFLDDDDYLIDRSYFSKAVYFHQQHPEI-AFVAAN 240 +N N G N RK L GE+ + LD DDYL+D + AV ++HP+I A + Sbjct: 62 RNAQNLGRVANYRKTLYERARGEWVINLDGDDYLVDPCFVEDAVGVVKKHPDIVAVLGGR 121 Query: 241 VFLEYSKTEQLKPSSLRLS-RIIPKEAYFKNFEQKGYPKPASTLTAIFKRDTLMKMDILN 299 L+ S T +++ +++ LS R+ P++ + + +P +TL + R + + Sbjct: 122 KVLQASGTHKVQQANVCLSGRVAPRDVFSGILDGTLFPYHNATL---YSRTHALAIGFYE 178 Query: 300 MNMV-NDASIYLRALLIGDAGFIDTFAGVYRIHGNNITFNLSQSFLIENLE 349 ++V +D +LR G G + GV+R H N + ++ S + N++ Sbjct: 179 QDIVSSDLESFLRLFARGAVGVLPRIVGVWREHSGNTSGTMAFSDYLANIQ 229 >C1QA93.1 C1QA93_9SPIR Predicted glycosyltransferase Length = 345 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 108/217 (49%), Gaps = 5/217 (2%) Query: 118 STLPKVSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSDGTAELMSRSFGDDPR 177 +T P VSV+I TYNRK+ L +A++S+L+Q Y + EI V D+ S+DGT + M D R Sbjct: 2 NTFPLVSVLIPTYNRKDLLKRALESVLKQTYKNIEIYVTDNASTDGTFDFMQEFSKSDKR 61 Query: 178 VIFMQNETNQGPGHNRRKALEAHGDGEYTLFLDDDDYLIDRSYFSKAVYFHQQHPEIAFV 237 +I+ + E N GP +N +A + H G+Y + L DDDY I ++F +V +++ I V Sbjct: 62 IIYNRREKNIGPLYNGSEAYK-HLKGKYAIILCDDDYFISNTFFENSVKAMEENENIVIV 120 Query: 238 AANVFLEYSKTEQLKPSSLRLSRIIPKEAYFKNF-EQKGYPKPASTLTAIFKRDTLMKMD 296 V K + I Y N+ +GY S A+F++ K + Sbjct: 121 RGVVKCFNEKNNNIFIDIYNSKEYIKGIDYLLNYANHEGYDNITS-FFAMFRKSAADKTE 179 Query: 297 ILNMNM-VNDASIYLRALLIGDAGFI-DTFAGVYRIH 331 + + + D ++L L GD F+ + G Y H Sbjct: 180 VFSKALPSGDTWLWLYLFLYGDVYFLSNEIIGCYVEH 216 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,494,880,924 Number of extensions: 101095135 Number of successful extensions: 281291 Number of sequences better than 1.0e-05: 2348 Number of HSP's gapped: 281805 Number of HSP's successfully gapped: 2414 Length of query: 438 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 299 Effective length of database: 1,751,175,118 Effective search space: 523601360282 Effective search space used: 523601360282 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)